Wall clock time and date at job start Mon Mar 30 2020 23:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47344 * 64.99466 * 11 10 9 13 13 C 1.52996 * 109.47463 * 185.00381 * 11 10 9 14 14 O 1.42893 * 109.47466 * 54.99231 * 13 11 10 15 15 N 1.46509 * 109.46818 * 304.99783 * 11 10 9 16 16 C 1.36937 * 119.99708 * 154.99760 * 15 11 10 17 17 H 1.07991 * 120.00633 * 0.02562 * 16 15 11 18 18 C 1.38813 * 119.99295 * 180.02562 * 16 15 11 19 19 N 1.31615 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47486 * 89.99454 * 20 18 16 22 22 H 1.48495 * 109.47258 * 210.00092 * 20 18 16 23 23 H 1.48502 * 109.47143 * 329.99700 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47333 * 299.99984 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 1.08998 * 109.47710 * 175.00105 * 13 11 10 35 35 H 1.09008 * 109.46560 * 294.99318 * 13 11 10 36 36 H 0.96703 * 114.00556 * 180.02562 * 14 13 11 37 37 H 0.97002 * 119.99663 * 335.00045 * 15 11 10 38 38 H 0.97009 * 119.99947 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1994 -2.9576 0.9150 13 6 8.6925 -4.7626 -0.1525 14 8 8.2460 -5.4593 -1.3175 15 7 8.2556 -2.5708 -1.1456 16 6 9.3681 -1.7743 -1.0888 17 1 10.0009 -1.7921 -0.2139 18 6 9.6823 -0.9441 -2.1560 19 7 8.9114 -0.9227 -3.2225 20 14 11.2003 0.1419 -2.0789 21 1 12.3650 -0.5953 -2.6313 22 1 10.9695 1.3726 -2.8771 23 1 11.4731 0.5118 -0.6668 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3094 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 9.7586 -4.5532 -0.2406 35 1 8.5149 -5.3781 0.7294 36 1 8.6914 -6.3049 -1.4650 37 1 7.6873 -2.5550 -1.9316 38 1 9.1312 -0.3428 -3.9684 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507172580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:39 Heat of formation + Delta-G solvation = -79.844891 kcal Electronic energy + Delta-G solvation = -21269.070568 eV Core-core repulsion = 17982.563981 eV Total energy + Delta-G solvation = -3286.506587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24936 -39.56898 -38.54082 -36.42665 -35.29898 -33.93508 -33.01092 -32.06652 -30.08525 -27.86858 -26.83239 -25.66528 -24.28627 -22.77963 -21.65428 -20.99981 -19.47895 -18.57023 -18.17079 -17.42027 -17.03635 -16.59823 -16.24035 -15.86731 -15.78011 -15.33432 -15.10585 -14.81215 -14.64536 -14.52896 -14.34500 -13.90742 -13.68406 -13.08734 -13.04035 -12.86011 -12.71548 -12.67767 -12.52716 -12.25302 -12.01053 -11.89074 -11.73424 -11.12320 -10.92170 -10.72831 -10.18706 -9.87004 -9.65969 -9.01691 -7.89802 -5.19817 -0.13786 0.38250 1.50353 1.51310 1.59435 1.83594 2.20417 2.57883 2.86954 3.42211 3.59997 3.70173 3.82943 3.88819 3.96479 4.01262 4.17986 4.37858 4.40210 4.42653 4.54372 4.58373 4.69909 4.85460 4.86019 4.89561 4.98052 5.00292 5.20160 5.26691 5.33774 5.44252 5.46105 5.55099 5.56819 5.96752 6.28257 6.52166 7.06190 7.15026 7.36505 8.07821 8.34042 9.32946 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.004919 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.867467 B = 5690.412505 C = 7174.401886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.091 4.091 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.150 4.150 7 C 0.549 3.451 8 O -0.586 6.586 9 N -0.705 5.705 10 C 0.128 3.872 11 C 0.161 3.839 12 H 0.081 0.919 13 C 0.065 3.935 14 O -0.584 6.584 15 N -0.723 5.723 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.294 1.294 22 H -0.300 1.300 23 H -0.265 1.265 24 C -0.079 4.079 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.410 0.590 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.386 0.614 37 H 0.372 0.628 38 H 0.249 0.751 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 2.292 9.941 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.142 4.142 5 C -0.117 4.117 6 C -0.153 4.153 7 C 0.338 3.662 8 O -0.468 6.468 9 N -0.356 5.356 10 C 0.004 3.996 11 C 0.052 3.948 12 H 0.098 0.902 13 C -0.016 4.016 14 O -0.391 6.391 15 N -0.363 5.363 16 C -0.371 4.371 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.222 1.222 22 H -0.227 1.227 23 H -0.190 1.190 24 C -0.098 4.098 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.170 0.830 30 H 0.142 0.858 31 H 0.247 0.753 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.203 0.797 38 H 0.057 0.943 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.221 2.152 9.978 15.924 hybrid contribution 1.665 0.079 -0.704 1.810 sum -10.556 2.231 9.275 14.228 Atomic orbital electron populations 1.20851 0.88417 1.03928 1.03518 1.20248 0.98057 0.92105 0.99527 1.21650 0.93992 0.98681 0.96562 1.21438 0.94991 0.98135 0.99606 1.21505 1.00332 0.92226 0.97683 1.19941 0.94973 0.92415 1.07933 1.18729 0.82413 0.89326 0.75752 1.90681 1.69312 1.33935 1.52920 1.45918 1.05706 1.10919 1.73022 1.21438 0.91365 0.85214 1.01626 1.20857 0.91231 0.90387 0.92354 0.90173 1.22868 0.97641 0.93797 0.87281 1.86526 1.66852 1.38370 1.47367 1.42491 1.29359 1.47052 1.17402 1.19625 1.01871 1.14599 1.00961 0.89985 1.25479 1.01729 1.02449 0.96474 1.69853 1.40942 1.43413 1.07456 0.85215 0.79396 0.77867 0.77666 1.22192 1.22680 1.18968 1.21228 0.92175 0.99210 0.97222 0.89783 0.89449 0.91408 0.82189 0.83046 0.85752 0.75275 0.90260 0.93066 0.94331 0.91563 0.76642 0.79657 0.94261 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 2 C -0.10 -2.16 5.87 -19.90 -0.12 -2.27 16 3 C -0.09 -1.76 9.69 22.33 0.22 -1.54 16 4 C -0.12 -2.81 10.03 22.23 0.22 -2.59 16 5 C -0.10 -2.85 9.54 22.53 0.21 -2.63 16 6 C -0.15 -4.88 5.87 -20.09 -0.12 -4.99 16 7 C 0.55 20.99 7.77 86.79 0.67 21.66 16 8 O -0.59 -25.51 16.35 -3.87 -0.06 -25.57 16 9 N -0.71 -26.05 5.34 -465.98 -2.49 -28.54 16 10 C 0.13 4.72 5.12 86.38 0.44 5.16 16 11 C 0.16 6.04 2.84 44.99 0.13 6.17 16 12 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 13 C 0.06 2.15 6.85 71.98 0.49 2.64 16 14 O -0.58 -20.62 12.64 -148.98 -1.88 -22.51 16 15 N -0.72 -34.65 4.51 -322.94 -1.46 -36.10 16 16 C -0.24 -12.38 9.93 84.03 0.83 -11.55 16 17 H 0.08 3.99 7.83 -2.92 -0.02 3.96 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 19 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 20 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 C -0.08 -2.27 9.24 22.53 0.21 -2.06 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 28 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.12 3.67 6.41 -2.91 -0.02 3.66 16 31 H 0.41 14.99 6.17 -92.71 -0.57 14.41 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 33 H 0.05 2.17 7.39 -2.39 -0.02 2.15 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.39 9.52 9.12 -74.06 -0.68 8.85 16 37 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 38 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 39 H 0.13 3.67 7.65 -2.91 -0.02 3.65 16 Total: -1.00 -70.85 334.65 -0.08 -70.94 By element: Atomic # 1 Polarization: 50.16 SS G_CDS: -0.88 Total: 49.27 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.38 Total: 3.80 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -3.66 Total: -122.30 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.95 Total: -48.08 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.85 -0.08 -70.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507172580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -70.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds