Wall clock time and date at job start Tue Mar 31 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47207 * 85.00562 * 4 3 2 6 6 O 1.20829 * 119.99987 * 359.97438 * 5 4 3 7 7 O 1.34223 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00174 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46799 * 329.99494 * 8 7 5 10 10 C 1.50700 * 109.47176 * 209.99370 * 8 7 5 11 11 H 1.07993 * 120.00054 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99960 * 179.97438 * 10 8 7 13 13 N 1.31513 * 120.00229 * 180.02562 * 12 10 8 14 14 Si 1.86801 * 120.00308 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.46980 * 89.99721 * 14 12 10 16 16 H 1.48502 * 109.47468 * 210.00156 * 14 12 10 17 17 H 1.48508 * 109.46811 * 330.00191 * 14 12 10 18 18 C 1.53002 * 109.47139 * 89.99340 * 8 7 5 19 19 C 1.52994 * 117.50042 * 8.75065 * 18 8 7 20 20 C 1.52994 * 117.50248 * 300.08901 * 18 8 7 21 21 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 22 22 N 1.30833 * 108.20100 * 359.97438 * 21 3 2 23 23 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.03821 * 0.02628 * 23 2 1 25 25 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 27 27 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 28 28 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 29 29 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 30 30 H 0.96995 * 120.00698 * 180.02562 * 13 12 10 31 31 H 1.09005 * 115.54776 * 154.41901 * 18 8 7 32 32 H 1.09003 * 117.49981 * 359.97438 * 19 18 8 33 33 H 1.09000 * 117.49917 * 145.01768 * 19 18 8 34 34 H 1.09001 * 117.49800 * 214.98429 * 20 18 8 35 35 H 1.09005 * 117.49735 * 359.97182 * 20 18 8 36 36 H 1.07995 * 125.89269 * 180.02562 * 21 3 2 37 37 H 1.09000 * 109.47005 * 269.99454 * 24 23 2 38 38 H 1.09003 * 109.46946 * 29.99763 * 24 23 2 39 39 H 1.09006 * 109.46968 * 149.99628 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5711 2.9683 1.4146 6 8 1.7347 2.1964 2.3298 7 8 1.1460 4.2178 1.6585 8 6 0.9035 4.5728 3.0454 9 1 0.5961 3.6856 3.5990 10 6 -0.1865 5.6111 3.1149 11 1 -0.6508 5.9682 2.2077 12 6 -0.5916 6.1045 4.3370 13 7 -1.5432 7.0102 4.3978 14 14 0.2110 5.4864 5.9065 15 1 1.3839 6.3375 6.2309 16 1 -0.7686 5.5478 7.0209 17 1 0.6559 4.0825 5.7152 18 6 2.1861 5.1380 3.6589 19 6 3.3577 5.4163 2.7152 20 6 3.4178 4.2307 3.6815 21 6 3.6335 0.6560 0.0006 22 7 3.6333 -0.6524 0.0015 23 7 2.3026 -1.0900 0.0005 24 6 1.8539 -2.4846 0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 2.6186 3.1586 -0.4348 29 1 0.9307 2.6155 -0.5903 30 1 -1.8280 7.3576 5.2575 31 1 2.0454 5.8166 4.5003 32 1 3.2149 5.1964 1.6571 33 1 3.9880 6.2778 2.9358 34 1 4.0876 4.3127 4.5375 35 1 3.3143 3.2310 3.2597 36 1 4.5083 1.2892 0.0011 37 1 1.7424 -2.8303 1.0283 38 1 0.8956 -2.5579 -0.5136 39 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:09 Heat of formation + Delta-G solvation = 20.172053 kcal Electronic energy + Delta-G solvation = -22050.457794 eV Core-core repulsion = 18768.288267 eV Total energy + Delta-G solvation = -3282.169527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.36373 -39.77263 -36.78390 -34.89552 -33.72176 -32.91125 -32.72090 -29.91415 -28.55125 -26.77078 -25.74797 -22.88875 -21.79937 -21.40604 -20.73552 -19.56286 -19.01900 -17.14514 -16.66863 -16.55900 -15.96771 -15.77105 -15.31806 -14.71600 -14.35351 -13.93149 -13.73796 -13.39555 -13.20465 -12.87528 -12.75081 -12.50227 -12.47548 -12.21120 -11.84856 -11.73997 -11.59079 -11.34189 -10.89638 -10.72130 -10.56511 -10.18670 -9.96014 -9.73771 -9.58826 -9.27149 -9.23238 -8.77382 -8.66031 -8.29718 -6.22106 -4.23938 1.85214 2.47167 2.71930 2.93322 3.19044 3.31392 3.38668 3.77974 4.28291 4.41626 4.58601 4.61461 4.92058 4.96865 5.05968 5.06873 5.17678 5.23252 5.34853 5.42484 5.57044 5.65047 5.71731 5.72487 5.80022 5.81615 5.90670 6.18816 6.23819 6.34113 6.53699 6.66389 6.77833 6.83258 6.89807 6.99766 7.39243 7.56159 7.70772 8.27775 8.67534 8.86401 9.35594 10.89673 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.004837 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.449545 B = 5787.564590 C = 6115.345053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.104 3.896 3 C -0.226 4.226 4 C -0.035 4.035 5 C 0.449 3.551 6 O -0.511 6.511 7 O -0.341 6.341 8 C 0.226 3.774 9 H 0.050 0.950 10 C -0.518 4.518 11 H 0.088 0.912 12 C 0.081 3.919 13 N -0.888 5.888 14 Si 0.871 3.129 15 H -0.274 1.274 16 H -0.289 1.289 17 H -0.257 1.257 18 C -0.164 4.164 19 C -0.169 4.169 20 C -0.207 4.207 21 C 0.067 3.933 22 N -0.303 5.303 23 N -0.376 5.376 24 C 0.102 3.898 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.269 0.731 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.182 0.818 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 -13.977 -9.922 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.023 4.023 3 C -0.237 4.237 4 C -0.074 4.074 5 C 0.292 3.708 6 O -0.400 6.400 7 O -0.257 6.257 8 C 0.172 3.828 9 H 0.068 0.932 10 C -0.556 4.556 11 H 0.106 0.894 12 C -0.122 4.122 13 N -0.525 5.525 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.216 1.216 17 H -0.181 1.181 18 C -0.183 4.183 19 C -0.206 4.206 20 C -0.244 4.244 21 C -0.119 4.119 22 N -0.123 5.123 23 N -0.159 5.159 24 C -0.039 4.039 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.199 0.801 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.853 -15.285 -9.494 19.255 hybrid contribution 0.018 0.575 1.234 1.362 sum 6.872 -14.710 -8.260 18.216 Atomic orbital electron populations 1.20517 0.87330 1.03635 1.03958 1.20786 0.94454 0.87014 1.00054 1.19177 0.92656 0.93843 1.18027 1.19509 1.03836 0.92010 0.92008 1.23579 0.73946 0.81247 0.92066 1.90575 1.48245 1.54440 1.46748 1.86517 1.75439 1.29387 1.34354 1.20406 0.91452 0.96238 0.74714 0.93228 1.20731 1.17098 1.22172 0.95567 0.89404 1.24707 0.94721 0.94333 0.98447 1.69835 1.28517 1.28217 1.25942 0.87076 0.78907 0.80865 0.83200 1.20043 1.21564 1.18076 1.23412 0.90875 1.02214 1.01753 1.22748 1.01863 0.99028 0.96995 1.23261 1.02433 0.96585 1.02089 1.23679 0.97438 0.92019 0.98796 1.77313 0.96498 1.12872 1.25652 1.48290 1.03982 1.05783 1.57819 1.21797 1.00792 0.77986 1.03332 0.89631 0.89402 0.91251 0.87474 0.87732 0.92107 0.87607 0.88811 0.89751 0.90140 0.87901 0.80132 0.90841 0.89649 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.90 36.00 0.36 -0.62 16 2 C 0.10 1.37 6.93 -82.27 -0.57 0.80 16 3 C -0.23 -3.18 4.59 -105.05 -0.48 -3.67 16 4 C -0.03 -0.48 6.03 -29.04 -0.18 -0.65 16 5 C 0.45 8.48 6.90 36.00 0.25 8.73 16 6 O -0.51 -10.99 13.08 -18.75 -0.25 -11.24 16 7 O -0.34 -7.47 8.38 -39.24 -0.33 -7.80 16 8 C 0.23 5.61 2.00 -27.88 -0.06 5.56 16 9 H 0.05 1.32 6.21 -51.93 -0.32 1.00 16 10 C -0.52 -14.65 9.48 -34.44 -0.33 -14.98 16 11 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 12 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 13 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 14 Si 0.87 21.60 24.48 -169.99 -4.16 17.44 16 15 H -0.27 -6.55 6.72 56.52 0.38 -6.17 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 18 C -0.16 -3.77 4.45 -90.62 -0.40 -4.17 16 19 C -0.17 -3.27 9.80 -26.70 -0.26 -3.53 16 20 C -0.21 -4.14 9.85 -26.70 -0.26 -4.40 16 21 C 0.07 0.93 11.96 -17.36 -0.21 0.72 16 22 N -0.30 -4.49 12.57 30.62 0.39 -4.10 16 23 N -0.38 -4.86 4.01 -63.88 -0.26 -5.11 16 24 C 0.10 0.83 11.27 59.85 0.67 1.51 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.83 7.25 -51.93 -0.38 0.45 16 27 H 0.07 0.51 7.08 -51.93 -0.37 0.14 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.22 7.31 -51.93 -0.38 0.84 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.11 2.55 4.40 -51.93 -0.23 2.32 16 32 H 0.09 1.73 6.91 -51.93 -0.36 1.38 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.10 2.14 5.37 -51.93 -0.28 1.86 16 36 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.47 7.05 -51.93 -0.37 0.11 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -34.34 320.32 -5.82 -40.16 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.25 Total: 4.04 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.56 Total: -12.48 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.90 Total: -34.95 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.57 Total: -19.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.16 Total: 17.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.34 -5.82 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.330 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds