Wall clock time and date at job start Tue Mar 31 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47207 * 85.00562 * 4 3 2 6 6 O 1.20829 * 119.99987 * 359.97438 * 5 4 3 7 7 O 1.34223 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00174 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46799 * 329.99494 * 8 7 5 10 10 C 1.50700 * 109.47176 * 209.99370 * 8 7 5 11 11 H 1.07993 * 120.00054 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99960 * 179.97438 * 10 8 7 13 13 N 1.31513 * 120.00229 * 180.02562 * 12 10 8 14 14 Si 1.86801 * 120.00308 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.46980 * 89.99721 * 14 12 10 16 16 H 1.48502 * 109.47468 * 210.00156 * 14 12 10 17 17 H 1.48508 * 109.46811 * 330.00191 * 14 12 10 18 18 C 1.53002 * 109.47139 * 89.99340 * 8 7 5 19 19 C 1.52994 * 117.50042 * 8.75065 * 18 8 7 20 20 C 1.52994 * 117.50248 * 300.08901 * 18 8 7 21 21 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 22 22 N 1.30833 * 108.20100 * 359.97438 * 21 3 2 23 23 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.03821 * 0.02628 * 23 2 1 25 25 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 27 27 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 28 28 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 29 29 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 30 30 H 0.96995 * 120.00698 * 180.02562 * 13 12 10 31 31 H 1.09005 * 115.54776 * 154.41901 * 18 8 7 32 32 H 1.09003 * 117.49981 * 359.97438 * 19 18 8 33 33 H 1.09000 * 117.49917 * 145.01768 * 19 18 8 34 34 H 1.09001 * 117.49800 * 214.98429 * 20 18 8 35 35 H 1.09005 * 117.49735 * 359.97182 * 20 18 8 36 36 H 1.07995 * 125.89269 * 180.02562 * 21 3 2 37 37 H 1.09000 * 109.47005 * 269.99454 * 24 23 2 38 38 H 1.09003 * 109.46946 * 29.99763 * 24 23 2 39 39 H 1.09006 * 109.46968 * 149.99628 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5711 2.9683 1.4146 6 8 1.7347 2.1964 2.3298 7 8 1.1460 4.2178 1.6585 8 6 0.9035 4.5728 3.0454 9 1 0.5961 3.6856 3.5990 10 6 -0.1865 5.6111 3.1149 11 1 -0.6508 5.9682 2.2077 12 6 -0.5916 6.1045 4.3370 13 7 -1.5432 7.0102 4.3978 14 14 0.2110 5.4864 5.9065 15 1 1.3839 6.3375 6.2309 16 1 -0.7686 5.5478 7.0209 17 1 0.6559 4.0825 5.7152 18 6 2.1861 5.1380 3.6589 19 6 3.3577 5.4163 2.7152 20 6 3.4178 4.2307 3.6815 21 6 3.6335 0.6560 0.0006 22 7 3.6333 -0.6524 0.0015 23 7 2.3026 -1.0900 0.0005 24 6 1.8539 -2.4846 0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 2.6186 3.1586 -0.4348 29 1 0.9307 2.6155 -0.5903 30 1 -1.8280 7.3576 5.2575 31 1 2.0454 5.8166 4.5003 32 1 3.2149 5.1964 1.6571 33 1 3.9880 6.2778 2.9358 34 1 4.0876 4.3127 4.5375 35 1 3.3143 3.2310 3.2597 36 1 4.5083 1.2892 0.0011 37 1 1.7424 -2.8303 1.0283 38 1 0.8956 -2.5579 -0.5136 39 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:09 Heat of formation + Delta-G solvation = -1.751595 kcal Electronic energy + Delta-G solvation = -22051.408475 eV Core-core repulsion = 18768.288267 eV Total energy + Delta-G solvation = -3283.120207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.37290 -41.35581 -38.41781 -36.54367 -34.88244 -34.65528 -33.89454 -31.16175 -30.24684 -27.60723 -26.80748 -24.84496 -23.33503 -22.87167 -21.80737 -21.09681 -20.20409 -18.99860 -18.36372 -17.86532 -17.48467 -17.10967 -16.57109 -16.13688 -15.59480 -15.23846 -15.04182 -14.82906 -14.60938 -14.03243 -13.94706 -13.73052 -13.44928 -13.39539 -13.23104 -13.14617 -12.95878 -12.73524 -12.65794 -12.36627 -12.10744 -11.88084 -11.57284 -11.41351 -11.35780 -10.98993 -10.74008 -10.61305 -10.18792 -9.31396 -8.42427 -6.49145 0.87069 1.22226 1.30222 1.41934 1.45000 1.56876 1.68169 2.21180 2.34055 2.86344 3.01757 3.58819 3.76605 3.91110 3.97259 4.04153 4.13664 4.14535 4.23548 4.33679 4.37353 4.44880 4.57317 4.64910 4.69421 4.75139 4.77484 4.86423 4.94021 5.03429 5.04837 5.14784 5.22701 5.26678 5.41450 5.65713 5.79126 6.12555 6.22638 6.55091 6.72100 7.04326 7.18319 8.73186 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.004837 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.449545 B = 5787.564590 C = 6115.345053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.100 3.900 3 C -0.249 4.249 4 C -0.023 4.023 5 C 0.448 3.552 6 O -0.538 6.538 7 O -0.351 6.351 8 C 0.234 3.766 9 H 0.026 0.974 10 C -0.529 4.529 11 H 0.051 0.949 12 C 0.035 3.965 13 N -0.930 5.930 14 Si 0.932 3.068 15 H -0.256 1.256 16 H -0.284 1.284 17 H -0.258 1.258 18 C -0.201 4.201 19 C -0.149 4.149 20 C -0.190 4.190 21 C 0.058 3.942 22 N -0.333 5.333 23 N -0.379 5.379 24 C 0.091 3.909 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.274 0.726 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.200 0.800 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 -15.069 -10.380 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.029 4.029 3 C -0.261 4.261 4 C -0.061 4.061 5 C 0.292 3.708 6 O -0.428 6.428 7 O -0.267 6.267 8 C 0.180 3.820 9 H 0.044 0.956 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.165 4.165 13 N -0.568 5.568 14 Si 0.758 3.242 15 H -0.181 1.181 16 H -0.210 1.210 17 H -0.182 1.182 18 C -0.219 4.219 19 C -0.185 4.185 20 C -0.227 4.227 21 C -0.127 4.127 22 N -0.154 5.154 23 N -0.162 5.162 24 C -0.049 4.049 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.216 0.784 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.285 -16.399 -9.974 20.906 hybrid contribution -0.479 0.823 1.270 1.587 sum 7.806 -15.576 -8.704 19.476 Atomic orbital electron populations 1.20612 0.85537 1.05678 1.03599 1.21271 0.95709 0.87090 0.98861 1.19339 0.93029 0.94140 1.19565 1.19617 1.05765 0.92334 0.88418 1.24634 0.72499 0.79672 0.93956 1.90559 1.49373 1.54719 1.48198 1.86508 1.76207 1.31470 1.32528 1.19913 0.91715 0.94096 0.76291 0.95597 1.20919 1.18343 1.22916 0.94438 0.93120 1.25441 0.95078 0.94332 1.01619 1.69950 1.30052 1.29720 1.27096 0.86092 0.78596 0.80354 0.79198 1.18112 1.20998 1.18235 1.23170 0.91195 1.04336 1.03201 1.22904 0.99218 0.99497 0.96912 1.23256 1.00355 0.96106 1.02980 1.24062 0.98236 0.92123 0.98325 1.77247 0.97988 1.13434 1.26775 1.48675 1.03388 1.07236 1.56874 1.22169 1.02485 0.75990 1.04231 0.90994 0.88665 0.88074 0.84742 0.85522 0.91681 0.88777 0.88131 0.87223 0.87878 0.88816 0.78363 0.90444 0.86740 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.90 71.24 0.71 -1.07 16 2 C 0.10 2.45 6.93 41.41 0.29 2.73 16 3 C -0.25 -6.62 4.59 -20.14 -0.09 -6.71 16 4 C -0.02 -0.59 6.03 29.10 0.18 -0.41 16 5 C 0.45 16.52 6.90 71.23 0.49 17.01 16 6 O -0.54 -22.95 13.08 21.95 0.29 -22.66 16 7 O -0.35 -15.32 8.38 -51.35 -0.43 -15.75 16 8 C 0.23 11.76 2.00 29.85 0.06 11.82 16 9 H 0.03 1.42 6.21 -2.39 -0.01 1.41 16 10 C -0.53 -30.80 9.48 25.60 0.24 -30.56 16 11 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 12 C 0.04 2.03 5.44 84.65 0.46 2.49 16 13 N -0.93 -56.78 13.96 21.45 0.30 -56.48 16 14 Si 0.93 44.97 24.48 68.60 1.68 46.65 16 15 H -0.26 -11.52 6.72 99.48 0.67 -10.85 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 18 C -0.20 -8.96 4.45 -10.80 -0.05 -9.01 16 19 C -0.15 -5.34 9.80 30.61 0.30 -5.04 16 20 C -0.19 -7.15 9.85 30.61 0.30 -6.85 16 21 C 0.06 1.53 11.96 85.24 1.02 2.55 16 22 N -0.33 -9.50 12.57 -57.02 -0.72 -10.21 16 23 N -0.38 -9.17 4.01 -356.02 -1.43 -10.59 16 24 C 0.09 1.29 11.27 127.77 1.44 2.73 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.60 7.25 -2.39 -0.02 1.58 16 27 H 0.10 1.17 7.08 -2.38 -0.02 1.15 16 28 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.13 2.65 7.31 -2.39 -0.02 2.63 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.09 4.41 4.40 -2.38 -0.01 4.40 16 32 H 0.10 3.46 6.91 -2.39 -0.02 3.44 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.73 5.37 -2.38 -0.01 3.72 16 36 H 0.20 4.15 8.06 -2.91 -0.02 4.12 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.91 7.05 -2.39 -0.02 0.89 16 39 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -76.14 320.32 6.00 -70.14 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.97 Total: 19.23 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 5.34 Total: -20.31 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.85 Total: -77.29 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.14 Total: -38.42 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.68 Total: 46.65 kcal Total: -76.14 6.00 -70.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.388 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds