Wall clock time and date at job start Tue Mar 31 2020 00:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47207 * 85.00562 * 4 3 2 6 6 O 1.20829 * 119.99987 * 359.97438 * 5 4 3 7 7 O 1.34223 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00174 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47156 * 29.99267 * 8 7 5 10 10 C 1.50700 * 109.47471 * 149.99575 * 8 7 5 11 11 H 1.08002 * 119.99700 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00372 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99989 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00370 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47195 * 119.99840 * 14 12 10 17 17 H 1.48494 * 109.47436 * 239.99952 * 14 12 10 18 18 C 1.53003 * 109.47131 * 269.99580 * 8 7 5 19 19 C 1.53001 * 117.49902 * 128.74722 * 18 8 7 20 20 C 1.52995 * 117.49596 * 60.08394 * 18 8 7 21 21 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 22 22 N 1.30833 * 108.20100 * 359.97438 * 21 3 2 23 23 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.03821 * 0.02628 * 23 2 1 25 25 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 27 27 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 28 28 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 29 29 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 30 30 H 0.96997 * 120.00164 * 180.02562 * 13 12 10 31 31 H 1.08996 * 115.54814 * 274.41834 * 18 8 7 32 32 H 1.09000 * 117.49759 * 359.97438 * 19 18 8 33 33 H 1.08992 * 117.49904 * 145.02132 * 19 18 8 34 34 H 1.08997 * 117.50130 * 214.97915 * 20 18 8 35 35 H 1.08996 * 117.50430 * 0.02562 * 20 18 8 36 36 H 1.07995 * 125.89269 * 180.02562 * 21 3 2 37 37 H 1.09000 * 109.47005 * 269.99454 * 24 23 2 38 38 H 1.09003 * 109.46946 * 29.99763 * 24 23 2 39 39 H 1.09006 * 109.46968 * 149.99628 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5711 2.9683 1.4146 6 8 1.7347 2.1964 2.3298 7 8 1.1460 4.2178 1.6585 8 6 0.9035 4.5728 3.0454 9 1 1.5705 3.9995 3.6891 10 6 1.1607 6.0450 3.2395 11 1 1.4753 6.6529 2.4042 12 6 0.9953 6.6155 4.4837 13 7 0.6126 5.8751 5.5010 14 14 1.3133 8.4404 4.7242 15 1 1.7298 9.0447 3.4331 16 1 0.0720 9.1004 5.2026 17 1 2.3915 8.6270 5.7281 18 6 -0.5495 4.2570 3.4061 19 6 -0.7995 3.4193 4.6618 20 6 -1.0097 2.8037 3.2760 21 6 3.6335 0.6560 0.0006 22 7 3.6333 -0.6524 0.0015 23 7 2.3026 -1.0900 0.0005 24 6 1.8539 -2.4846 0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 2.6186 3.1586 -0.4348 29 1 0.9307 2.6155 -0.5903 30 1 0.4958 6.2766 6.3763 31 1 -1.2728 5.0371 3.1692 32 1 0.0711 3.0929 5.2306 33 1 -1.6877 3.6481 5.2507 34 1 -2.0360 2.6277 2.9540 35 1 -0.2773 2.0725 2.9339 36 1 4.5083 1.2892 0.0011 37 1 1.7424 -2.8303 1.0283 38 1 0.8956 -2.5579 -0.5136 39 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:15 Heat of formation + Delta-G solvation = 11.567252 kcal Electronic energy + Delta-G solvation = -21961.634113 eV Core-core repulsion = 18679.091454 eV Total energy + Delta-G solvation = -3282.542659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27404 -39.39038 -36.37025 -34.78206 -33.63335 -32.82063 -32.59965 -29.75565 -27.77113 -26.70545 -25.60478 -23.19433 -21.30181 -21.09842 -20.49293 -19.27900 -18.93043 -17.02866 -16.61772 -16.24085 -15.70411 -15.39280 -14.95962 -14.47515 -14.28689 -14.01507 -13.68515 -13.23077 -13.11586 -12.76171 -12.56555 -12.41004 -12.33233 -12.03221 -11.65005 -11.44120 -11.18580 -11.02315 -10.87193 -10.50036 -10.37625 -10.22657 -9.78245 -9.55052 -9.27667 -9.16104 -8.99378 -8.59758 -8.39386 -8.20251 -6.11522 -4.18961 1.92797 2.54548 2.81907 3.15585 3.26394 3.33864 3.38460 3.95672 4.40439 4.48454 4.67856 4.97001 5.02880 5.08394 5.14028 5.21100 5.25513 5.30789 5.43734 5.50047 5.77487 5.86676 5.93773 5.99059 6.00456 6.20226 6.27541 6.43616 6.56683 6.70619 6.79491 7.03520 7.07695 7.19828 7.33400 7.46984 7.69659 7.78579 7.92592 8.19552 8.75068 8.99278 9.45886 10.95261 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.004437 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.289078 B = 6309.027960 C = 6792.639555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.102 3.898 3 C -0.223 4.223 4 C -0.036 4.036 5 C 0.451 3.549 6 O -0.513 6.513 7 O -0.356 6.356 8 C 0.249 3.751 9 H 0.047 0.953 10 C -0.526 4.526 11 H 0.069 0.931 12 C 0.068 3.932 13 N -0.874 5.874 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.229 4.229 21 C 0.067 3.933 22 N -0.304 5.304 23 N -0.377 5.377 24 C 0.103 3.897 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.263 0.737 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.182 0.818 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -11.864 -11.502 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.025 4.025 3 C -0.234 4.234 4 C -0.075 4.075 5 C 0.293 3.707 6 O -0.402 6.402 7 O -0.272 6.272 8 C 0.196 3.804 9 H 0.065 0.935 10 C -0.564 4.564 11 H 0.087 0.913 12 C -0.136 4.136 13 N -0.510 5.510 14 Si 0.732 3.268 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.131 4.131 19 C -0.162 4.162 20 C -0.266 4.266 21 C -0.119 4.119 22 N -0.124 5.124 23 N -0.160 5.160 24 C -0.039 4.039 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.199 0.801 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.708 -13.275 -10.987 17.246 hybrid contribution -0.426 1.619 0.581 1.772 sum -1.133 -11.656 -10.406 15.667 Atomic orbital electron populations 1.20497 0.87447 1.03449 1.03884 1.20751 0.94377 0.87018 1.00356 1.19206 0.92632 0.93951 1.17599 1.19509 1.03576 0.91889 0.92479 1.23404 0.74017 0.81500 0.91741 1.90568 1.48623 1.54307 1.46726 1.86476 1.75386 1.29206 1.36123 1.20153 0.90762 0.96067 0.73416 0.93544 1.20970 1.47751 0.91992 0.95667 0.91269 1.24880 0.94689 0.98609 0.95408 1.70060 1.45031 1.35362 1.00534 0.86328 0.77875 0.84247 0.78318 1.19510 1.20870 1.20881 1.22587 0.98867 0.90311 1.01380 1.22355 1.01482 1.02752 0.89629 1.23279 1.00527 0.99101 1.03704 1.23695 0.97526 0.91994 0.98723 1.77306 0.96471 1.12901 1.25722 1.48276 1.04002 1.05732 1.57960 1.21782 1.00712 0.78069 1.03297 0.89674 0.89535 0.91375 0.87603 0.88087 0.92769 0.89434 0.89433 0.90894 0.91189 0.88772 0.80099 0.90870 0.89734 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.90 36.00 0.36 -0.64 16 2 C 0.10 1.41 6.93 -82.27 -0.57 0.84 16 3 C -0.22 -3.33 4.59 -105.05 -0.48 -3.81 16 4 C -0.04 -0.52 6.03 -29.04 -0.18 -0.70 16 5 C 0.45 9.11 7.17 36.00 0.26 9.37 16 6 O -0.51 -11.81 13.08 -18.75 -0.25 -12.05 16 7 O -0.36 -8.26 9.85 -39.24 -0.39 -8.65 16 8 C 0.25 6.53 2.25 -27.88 -0.06 6.47 16 9 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 10 C -0.53 -14.60 8.88 -34.44 -0.31 -14.90 16 11 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 13 N -0.87 -24.34 11.43 55.43 0.63 -23.71 16 14 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.11 -2.75 4.47 -90.62 -0.41 -3.15 16 19 C -0.12 -2.89 9.04 -26.69 -0.24 -3.14 16 20 C -0.23 -4.86 9.80 -26.69 -0.26 -5.12 16 21 C 0.07 0.99 11.96 -17.36 -0.21 0.79 16 22 N -0.30 -4.73 12.57 30.62 0.39 -4.35 16 23 N -0.38 -5.10 4.01 -63.88 -0.26 -5.36 16 24 C 0.10 0.89 11.27 59.85 0.67 1.56 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 0.83 7.25 -51.93 -0.38 0.46 16 27 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 28 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.10 1.23 7.31 -51.93 -0.38 0.86 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.09 2.20 8.11 -51.93 -0.42 1.77 16 32 H 0.09 2.19 8.05 -51.93 -0.42 1.77 16 33 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 2.06 5.37 -51.93 -0.28 1.78 16 36 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.50 7.05 -51.93 -0.37 0.14 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -33.16 329.58 -6.91 -40.08 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.47 Total: 3.81 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.52 Total: -10.67 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.76 Total: -33.41 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.63 Total: -20.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.16 -6.91 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.642 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds