Wall clock time and date at job start Tue Mar 31 2020 00:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47207 * 85.00562 * 4 3 2 6 6 O 1.20829 * 119.99987 * 359.97438 * 5 4 3 7 7 O 1.34223 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00174 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47156 * 29.99267 * 8 7 5 10 10 C 1.50700 * 109.47471 * 149.99575 * 8 7 5 11 11 H 1.08002 * 119.99700 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00372 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99989 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00370 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47195 * 119.99840 * 14 12 10 17 17 H 1.48494 * 109.47436 * 239.99952 * 14 12 10 18 18 C 1.53003 * 109.47131 * 269.99580 * 8 7 5 19 19 C 1.53001 * 117.49902 * 128.74722 * 18 8 7 20 20 C 1.52995 * 117.49596 * 60.08394 * 18 8 7 21 21 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 22 22 N 1.30833 * 108.20100 * 359.97438 * 21 3 2 23 23 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.03821 * 0.02628 * 23 2 1 25 25 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 27 27 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 28 28 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 29 29 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 30 30 H 0.96997 * 120.00164 * 180.02562 * 13 12 10 31 31 H 1.08996 * 115.54814 * 274.41834 * 18 8 7 32 32 H 1.09000 * 117.49759 * 359.97438 * 19 18 8 33 33 H 1.08992 * 117.49904 * 145.02132 * 19 18 8 34 34 H 1.08997 * 117.50130 * 214.97915 * 20 18 8 35 35 H 1.08996 * 117.50430 * 0.02562 * 20 18 8 36 36 H 1.07995 * 125.89269 * 180.02562 * 21 3 2 37 37 H 1.09000 * 109.47005 * 269.99454 * 24 23 2 38 38 H 1.09003 * 109.46946 * 29.99763 * 24 23 2 39 39 H 1.09006 * 109.46968 * 149.99628 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5711 2.9683 1.4146 6 8 1.7347 2.1964 2.3298 7 8 1.1460 4.2178 1.6585 8 6 0.9035 4.5728 3.0454 9 1 1.5705 3.9995 3.6891 10 6 1.1607 6.0450 3.2395 11 1 1.4753 6.6529 2.4042 12 6 0.9953 6.6155 4.4837 13 7 0.6126 5.8751 5.5010 14 14 1.3133 8.4404 4.7242 15 1 1.7298 9.0447 3.4331 16 1 0.0720 9.1004 5.2026 17 1 2.3915 8.6270 5.7281 18 6 -0.5495 4.2570 3.4061 19 6 -0.7995 3.4193 4.6618 20 6 -1.0097 2.8037 3.2760 21 6 3.6335 0.6560 0.0006 22 7 3.6333 -0.6524 0.0015 23 7 2.3026 -1.0900 0.0005 24 6 1.8539 -2.4846 0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 2.6186 3.1586 -0.4348 29 1 0.9307 2.6155 -0.5903 30 1 0.4958 6.2766 6.3763 31 1 -1.2728 5.0371 3.1692 32 1 0.0711 3.0929 5.2306 33 1 -1.6877 3.6481 5.2507 34 1 -2.0360 2.6277 2.9540 35 1 -0.2773 2.0725 2.9339 36 1 4.5083 1.2892 0.0011 37 1 1.7424 -2.8303 1.0283 38 1 0.8956 -2.5579 -0.5136 39 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:15 Heat of formation + Delta-G solvation = -7.884881 kcal Electronic energy + Delta-G solvation = -21962.477620 eV Core-core repulsion = 18679.091454 eV Total energy + Delta-G solvation = -3283.386167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33818 -41.08727 -38.17875 -36.57620 -34.67522 -34.63218 -33.86780 -30.87999 -29.65019 -27.58234 -26.76077 -25.15043 -23.06291 -22.56978 -21.70418 -21.01982 -20.18740 -18.87108 -18.28150 -17.42614 -17.20164 -16.90777 -16.51383 -16.12044 -15.69383 -15.21534 -15.00922 -14.49292 -14.42160 -13.98177 -13.91614 -13.44288 -13.29354 -13.19193 -13.13129 -12.93928 -12.88964 -12.79878 -12.60555 -12.20546 -12.13441 -11.72882 -11.55470 -11.34020 -11.09461 -10.89857 -10.54638 -10.39280 -10.17320 -9.29137 -8.18696 -6.35154 0.89076 1.43638 1.44168 1.55521 1.56754 1.61681 1.70306 2.30913 2.57131 3.08976 3.30333 3.60459 3.79102 4.07528 4.13082 4.18313 4.29459 4.35569 4.36387 4.40891 4.46428 4.52063 4.61693 4.69198 4.77805 4.85324 4.87491 4.96738 5.07584 5.14953 5.24574 5.32372 5.44129 5.53840 5.61566 5.69303 5.93618 6.15380 6.26992 6.70460 6.72602 7.17801 7.37069 8.87556 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.004437 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.289078 B = 6309.027960 C = 6792.639555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.102 3.898 3 C -0.250 4.250 4 C -0.022 4.022 5 C 0.447 3.553 6 O -0.545 6.545 7 O -0.364 6.364 8 C 0.255 3.745 9 H 0.002 0.998 10 C -0.554 4.554 11 H 0.064 0.936 12 C 0.024 3.976 13 N -0.897 5.897 14 Si 0.973 3.027 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.280 1.280 18 C -0.130 4.130 19 C -0.129 4.129 20 C -0.193 4.193 21 C 0.052 3.948 22 N -0.335 5.335 23 N -0.379 5.379 24 C 0.091 3.909 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.265 0.735 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -12.136 -12.913 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C -0.261 4.261 4 C -0.060 4.060 5 C 0.292 3.708 6 O -0.436 6.436 7 O -0.281 6.281 8 C 0.201 3.799 9 H 0.020 0.980 10 C -0.591 4.591 11 H 0.082 0.918 12 C -0.177 4.177 13 N -0.533 5.533 14 Si 0.797 3.203 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.206 1.206 18 C -0.149 4.149 19 C -0.166 4.166 20 C -0.229 4.229 21 C -0.133 4.133 22 N -0.156 5.156 23 N -0.162 5.162 24 C -0.049 4.049 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.212 0.788 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.032 -13.577 -12.418 18.512 hybrid contribution 0.018 1.576 1.017 1.876 sum -2.014 -12.002 -11.401 16.676 Atomic orbital electron populations 1.20624 0.85133 1.05752 1.03735 1.21293 0.95866 0.86832 0.98690 1.19372 0.92941 0.94373 1.19439 1.19597 1.05677 0.92119 0.88606 1.24567 0.72474 0.79964 0.93800 1.90552 1.49864 1.54771 1.48397 1.86471 1.76105 1.31263 1.34228 1.19751 0.90970 0.94807 0.74324 0.98049 1.21256 1.48805 0.92948 0.96125 0.91760 1.25709 0.94091 1.03053 0.94896 1.70178 1.45145 1.37127 1.00851 0.85289 0.77944 0.78753 0.78324 1.18893 1.19945 1.20552 1.22381 0.97630 0.91985 1.02902 1.22262 1.00962 1.03255 0.90146 1.23265 1.02097 0.96393 1.01182 1.24045 0.98404 0.92224 0.98589 1.77233 0.98192 1.13300 1.26877 1.48684 1.03328 1.07322 1.56866 1.22177 1.02535 0.75923 1.04225 0.90798 0.88413 0.88049 0.85448 0.85050 0.92560 0.90209 0.92231 0.89453 0.87547 0.89442 0.78819 0.90497 0.86506 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.90 71.24 0.71 -1.01 16 2 C 0.10 2.62 6.93 41.41 0.29 2.91 16 3 C -0.25 -7.19 4.59 -20.14 -0.09 -7.28 16 4 C -0.02 -0.60 6.03 29.10 0.18 -0.43 16 5 C 0.45 18.06 7.17 71.23 0.51 18.57 16 6 O -0.54 -25.61 13.08 21.95 0.29 -25.32 16 7 O -0.36 -17.11 9.85 -51.35 -0.51 -17.61 16 8 C 0.25 13.78 2.25 29.85 0.07 13.85 16 9 H 0.00 0.11 6.91 -2.39 -0.02 0.09 16 10 C -0.55 -31.40 8.88 25.60 0.23 -31.18 16 11 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 12 C 0.02 1.33 5.30 84.65 0.45 1.78 16 13 N -0.90 -50.82 11.43 21.45 0.25 -50.57 16 14 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 C -0.13 -6.40 4.47 -10.79 -0.05 -6.45 16 19 C -0.13 -6.02 9.04 30.62 0.28 -5.74 16 20 C -0.19 -7.94 9.80 30.62 0.30 -7.64 16 21 C 0.05 1.55 11.96 85.24 1.02 2.57 16 22 N -0.33 -10.30 12.57 -57.02 -0.72 -11.02 16 23 N -0.38 -9.71 4.01 -356.02 -1.43 -11.13 16 24 C 0.09 1.37 11.27 127.77 1.44 2.81 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 1.55 7.25 -2.39 -0.02 1.53 16 27 H 0.10 1.13 7.08 -2.38 -0.02 1.11 16 28 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.13 2.83 7.31 -2.39 -0.02 2.81 16 30 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.08 4.02 8.11 -2.39 -0.02 4.00 16 32 H 0.06 3.09 8.05 -2.39 -0.02 3.08 16 33 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.09 3.77 5.37 -2.39 -0.01 3.76 16 36 H 0.20 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 0.97 7.05 -2.39 -0.02 0.95 16 39 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -73.96 329.58 6.28 -67.68 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.05 Total: 20.12 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.32 Total: -17.24 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.90 Total: -72.73 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.22 Total: -42.93 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.96 6.28 -67.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.797 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds