Wall clock time and date at job start Tue Mar 31 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30858 * 125.89062 * 2 1 4 4 N 1.40065 * 108.31022 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.02239 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02387 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99985 * 180.27663 * 8 6 5 10 10 Si 1.86800 * 119.99777 * 0.28166 * 8 6 5 11 11 H 1.48498 * 109.47109 * 89.99834 * 10 8 6 12 12 H 1.48507 * 109.46754 * 209.99574 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99405 * 10 8 6 14 14 C 1.35241 * 107.95996 * 0.22767 * 4 3 2 15 15 C 1.50700 * 126.16420 * 179.73929 * 14 4 3 16 16 C 1.35642 * 107.67452 * 359.63381 * 14 4 3 17 17 O 1.36182 * 126.08503 * 180.16181 * 16 14 4 18 18 C 1.34190 * 117.00053 * 270.26780 * 17 16 14 19 19 O 1.21214 * 119.99812 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00141 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.53001 * 117.49506 * 243.74336 * 21 20 18 23 23 C 1.53004 * 117.49669 * 175.08605 * 21 20 18 24 24 H 1.08993 * 109.47094 * 90.02997 * 1 2 3 25 25 H 1.09000 * 109.46825 * 210.02561 * 1 2 3 26 26 H 1.08998 * 109.47238 * 330.02180 * 1 2 3 27 27 H 1.09004 * 109.47166 * 330.02653 * 5 4 3 28 28 H 1.08994 * 109.47507 * 210.02359 * 5 4 3 29 29 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47413 * 89.99671 * 15 14 4 31 31 H 1.09005 * 109.47348 * 210.00181 * 15 14 4 32 32 H 1.08998 * 109.47024 * 329.99411 * 15 14 4 33 33 H 1.09006 * 109.47106 * 299.99803 * 20 18 17 34 34 H 1.09001 * 109.47132 * 59.99663 * 20 18 17 35 35 H 1.08995 * 115.55541 * 29.41319 * 21 20 18 36 36 H 1.09004 * 117.50118 * 0.02562 * 22 21 20 37 37 H 1.09006 * 117.49800 * 145.02397 * 22 21 20 38 38 H 1.08998 * 117.49827 * 214.97591 * 23 21 20 39 39 H 1.08994 * 117.50257 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6094 0.6371 0.0006 5 6 4.7885 1.5063 0.0003 6 6 5.1929 1.8049 1.4210 7 1 4.6282 1.3884 2.2421 8 6 6.2875 2.6047 1.6727 9 7 6.6436 2.8608 2.9125 10 14 7.2644 3.3246 0.2526 11 1 6.6967 4.6453 -0.1197 12 1 8.6820 3.4928 0.6620 13 1 7.1914 2.4079 -0.9135 14 6 3.6183 -0.7153 -0.0042 15 6 4.8408 -1.5965 -0.0109 16 6 2.3287 -1.1357 0.0006 17 8 1.9072 -2.4306 0.0012 18 6 1.7192 -3.0107 -1.1941 19 8 1.9236 -2.3835 -2.2110 20 6 1.2529 -4.4416 -1.2723 21 6 1.1189 -4.8549 -2.7393 22 6 -0.2787 -5.2159 -3.2466 23 6 0.7656 -6.3144 -3.0326 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 4.5528 2.4382 -0.5139 28 1 5.6090 1.0055 -0.5134 29 1 7.4134 3.4238 3.0895 30 1 5.1387 -1.8125 1.0151 31 1 4.6137 -2.5291 -0.5274 32 1 5.6544 -1.0852 -0.5255 33 1 1.9780 -5.0876 -0.7773 34 1 0.2857 -4.5360 -0.7787 35 1 1.7914 -4.3507 -3.4332 36 1 -1.1027 -5.1585 -2.5354 37 1 -0.5254 -4.9495 -4.2744 38 1 1.2055 -6.7702 -3.9197 39 1 0.6291 -6.9802 -2.1806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518649786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:05 Heat of formation + Delta-G solvation = -6.550994 kcal Electronic energy + Delta-G solvation = -21474.520601 eV Core-core repulsion = 18191.192276 eV Total energy + Delta-G solvation = -3283.328325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76704 -41.20012 -38.56616 -37.41352 -35.89124 -34.45380 -32.73313 -31.14985 -30.80047 -28.06118 -27.87938 -24.68929 -23.49741 -23.17586 -21.36971 -20.88986 -20.76164 -19.30966 -18.86850 -18.20723 -17.42146 -16.74289 -16.45829 -16.18282 -15.65612 -15.07410 -14.97791 -14.69822 -14.54156 -14.28647 -14.18564 -13.91279 -13.66517 -13.57217 -13.38366 -13.12703 -12.94428 -12.60785 -12.47020 -12.40856 -12.29189 -12.05621 -11.85593 -11.66297 -11.35596 -11.23370 -10.94500 -10.87802 -10.11078 -9.35290 -8.45253 -6.57238 0.75045 1.17950 1.18131 1.31594 1.34025 1.42740 1.58048 2.20248 2.22171 2.86618 2.94033 3.50631 3.59305 3.70779 3.87971 4.00272 4.07621 4.16437 4.30666 4.37448 4.46506 4.51408 4.60364 4.64503 4.67790 4.70616 4.74599 4.82849 4.85452 4.92739 5.07853 5.13340 5.14717 5.29484 5.31952 5.41042 5.73312 5.86432 6.19333 6.45265 6.69571 6.90184 7.06463 8.71204 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003932 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.371746 B = 7119.662279 C = 7501.327442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.058 3.942 3 N -0.323 5.323 4 N -0.341 5.341 5 C 0.240 3.760 6 C -0.554 4.554 7 H 0.028 0.972 8 C 0.026 3.974 9 N -0.933 5.933 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.238 1.238 14 C 0.089 3.911 15 C -0.083 4.083 16 C -0.103 4.103 17 O -0.251 6.251 18 C 0.442 3.558 19 O -0.532 6.532 20 C -0.068 4.068 21 C -0.170 4.170 22 C -0.181 4.181 23 C -0.156 4.156 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.275 0.725 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 -18.477 -10.755 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 N -0.147 5.147 4 N -0.121 5.121 5 C 0.121 3.879 6 C -0.592 4.592 7 H 0.046 0.954 8 C -0.175 4.175 9 N -0.571 5.571 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.161 1.161 14 C -0.043 4.043 15 C -0.141 4.141 16 C -0.157 4.157 17 O -0.163 6.163 18 C 0.287 3.713 19 O -0.420 6.420 20 C -0.105 4.105 21 C -0.188 4.188 22 C -0.218 4.218 23 C -0.193 4.193 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.136 -16.818 -10.939 22.478 hybrid contribution 0.687 0.277 -0.053 0.743 sum -9.449 -16.541 -10.991 21.993 Atomic orbital electron populations 1.20258 0.83776 1.04591 1.03682 1.23118 0.99010 0.89420 0.99262 1.77284 0.87423 1.23538 1.26408 1.48569 1.05622 1.04399 1.53526 1.19867 0.80210 0.90319 0.97546 1.21181 1.14035 1.33142 0.90796 0.95409 1.25782 0.97452 0.95210 0.99023 1.70013 1.27696 1.37910 1.21458 0.85716 0.78149 0.79985 0.79212 1.18986 1.19517 1.16080 1.21566 0.97932 0.85695 0.99074 1.20484 0.91888 0.97377 1.04363 1.17703 0.90243 0.83590 1.24149 1.84709 1.76501 1.22154 1.32936 1.25392 0.73220 0.91501 0.81201 1.90746 1.48048 1.66033 1.37174 1.21069 1.05886 0.85889 0.97665 1.22021 1.01130 1.00441 0.95253 1.23195 0.92277 1.03472 1.02853 1.23121 1.01802 0.90046 1.04307 0.89740 0.88543 0.89964 0.93141 0.90994 0.91541 0.89086 0.88685 0.90092 0.84723 0.84875 0.89034 0.87260 0.89071 0.88079 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 10.44 71.24 0.74 -1.15 16 2 C 0.06 2.37 7.23 43.18 0.31 2.68 16 3 N -0.32 -15.44 12.57 -47.18 -0.59 -16.04 16 4 N -0.34 -16.40 3.60 -337.94 -1.22 -17.62 16 5 C 0.24 11.74 5.07 85.64 0.43 12.18 16 6 C -0.55 -32.00 9.94 25.60 0.25 -31.74 16 7 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 8 C 0.03 1.45 5.47 84.66 0.46 1.91 16 9 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 10 Si 0.95 41.13 27.47 68.60 1.88 43.02 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 14 C 0.09 3.76 6.95 41.43 0.29 4.05 16 15 C -0.08 -2.78 10.09 71.24 0.72 -2.06 16 16 C -0.10 -4.10 5.34 22.14 0.12 -3.98 16 17 O -0.25 -8.01 10.13 2.31 0.02 -7.98 16 18 C 0.44 12.21 7.91 71.24 0.56 12.78 16 19 O -0.53 -18.96 15.33 20.77 0.32 -18.64 16 20 C -0.07 -1.08 6.09 29.85 0.18 -0.89 16 21 C -0.17 -2.82 5.41 -10.79 -0.06 -2.87 16 22 C -0.18 -2.39 10.18 30.62 0.31 -2.08 16 23 C -0.16 -1.68 10.26 30.62 0.31 -1.36 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.44 7.58 -2.38 -0.02 2.42 16 28 H 0.07 3.17 6.10 -2.39 -0.01 3.16 16 29 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.08 2.60 7.09 -2.39 -0.02 2.59 16 33 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.13 1.42 7.87 -2.39 -0.02 1.40 16 35 H 0.09 2.04 7.31 -2.39 -0.02 2.03 16 36 H 0.11 1.14 8.03 -2.39 -0.02 1.12 16 37 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -76.27 337.80 6.35 -69.92 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.99 Total: 16.19 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.65 Total: -12.54 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -1.51 Total: -89.96 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: 0.34 Total: -26.62 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal Total: -76.27 6.35 -69.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518649786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.368 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds