Wall clock time and date at job start Tue Mar 31 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30017 * 127.33457 * 2 1 4 4 O 1.20655 * 112.29764 * 179.97438 * 3 2 1 5 5 C 1.33488 * 113.16120 * 359.71654 * 4 3 2 6 6 C 1.50705 * 126.83223 * 180.30787 * 5 4 3 7 7 C 1.52999 * 117.49538 * 8.91886 * 6 5 4 8 8 C 1.52992 * 117.49628 * 300.25833 * 6 5 4 9 9 C 1.37360 * 106.34078 * 0.45252 * 5 4 3 10 10 C 1.47399 * 128.56712 * 179.85768 * 9 5 4 11 11 O 1.21610 * 119.99887 * 269.70044 * 10 9 5 12 12 N 1.34773 * 120.00110 * 89.69814 * 10 9 5 13 13 C 1.46507 * 120.00038 * 359.97438 * 12 10 9 14 14 C 1.46494 * 120.00247 * 180.02562 * 12 10 9 15 15 H 1.09001 * 109.47089 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47192 * 239.99902 * 14 12 10 17 17 C 1.50700 * 109.47463 * 120.00024 * 14 12 10 18 18 H 1.07997 * 120.00176 * 35.01900 * 17 14 12 19 19 C 1.37879 * 120.00072 * 215.02072 * 17 14 12 20 20 N 1.31509 * 120.00003 * 184.89664 * 19 17 14 21 21 Si 1.86805 * 119.99897 * 4.89487 * 19 17 14 22 22 H 1.48493 * 109.47129 * 84.80170 * 21 19 17 23 23 H 1.48501 * 109.46988 * 204.80134 * 21 19 17 24 24 H 1.48500 * 109.46826 * 324.79867 * 21 19 17 25 25 H 1.09005 * 109.47601 * 270.04537 * 1 2 3 26 26 H 1.09004 * 109.47377 * 30.04277 * 1 2 3 27 27 H 1.08995 * 109.47148 * 150.04439 * 1 2 3 28 28 H 1.08996 * 115.54913 * 154.58415 * 6 5 4 29 29 H 1.08998 * 117.50340 * 359.97438 * 7 6 5 30 30 H 1.09002 * 117.49837 * 145.02570 * 7 6 5 31 31 H 1.09005 * 117.49761 * 214.97812 * 8 6 5 32 32 H 1.09001 * 117.50436 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47269 * 269.99878 * 13 12 10 34 34 H 1.09003 * 109.47145 * 149.99623 * 13 12 10 35 35 H 1.09001 * 109.46770 * 30.00617 * 13 12 10 36 36 H 1.09001 * 109.47276 * 294.83893 * 16 14 12 37 37 H 1.08998 * 109.47064 * 54.83867 * 16 14 12 38 38 H 1.09000 * 109.46989 * 174.83751 * 16 14 12 39 39 H 0.97008 * 119.99937 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6007 0.0070 6 6 4.9712 -1.3246 0.0159 7 6 6.2338 -0.4870 0.2283 8 6 5.9243 -1.0691 -1.1532 9 6 2.3991 -1.1696 0.0006 10 6 2.0400 -2.5992 0.0009 11 8 1.8927 -3.1893 -1.0522 12 7 1.8750 -3.2523 1.1682 13 6 2.0530 -2.5415 2.4369 14 6 1.5186 -4.6733 1.1685 15 1 1.4308 -5.0261 0.1409 16 6 0.1821 -4.8638 1.8886 17 6 2.5892 -5.4596 1.8803 18 1 3.1021 -5.0291 2.7276 19 6 2.9139 -6.7285 1.4498 20 7 3.7782 -7.4518 2.1275 21 14 2.1260 -7.4204 -0.0963 22 1 2.8920 -6.9703 -1.2861 23 1 2.1342 -8.9041 -0.0345 24 1 0.7256 -6.9369 -0.1970 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5131 28 1 4.9550 -2.3276 0.4422 29 1 6.1085 0.5876 0.3611 30 1 7.0485 -0.9392 0.7938 31 1 6.5356 -1.9040 -1.4960 32 1 5.5953 -0.3778 -1.9291 33 1 3.0937 -2.6160 2.7521 34 1 1.4105 -2.9872 3.1963 35 1 1.7871 -1.4926 2.3060 36 1 0.2943 -4.5969 2.9395 37 1 -0.5721 -4.2243 1.4299 38 1 -0.1280 -5.9057 1.8094 39 1 4.0069 -8.3444 1.8244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518824832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:00 Heat of formation + Delta-G solvation = 51.028832 kcal Electronic energy + Delta-G solvation = -22441.060123 eV Core-core repulsion = 19160.228647 eV Total energy + Delta-G solvation = -3280.831476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -44.74275 -39.13850 -37.37017 -35.49843 -34.46815 -32.73992 -31.63061 -30.18528 -28.71560 -26.35137 -25.36674 -24.54932 -23.46412 -22.48039 -21.11355 -19.55584 -18.63596 -17.71579 -17.39084 -16.86860 -16.09292 -15.93090 -15.52052 -14.56624 -14.30767 -13.77341 -13.41224 -13.35581 -13.06748 -12.99017 -12.64873 -12.41710 -12.36001 -11.98472 -11.85635 -11.65960 -11.50545 -11.35028 -11.10952 -11.08683 -10.73303 -10.52757 -10.47398 -9.89129 -9.79804 -9.47876 -9.29547 -8.95442 -8.66304 -7.78932 -6.22777 -4.25512 1.40585 2.03156 2.87493 2.99822 3.27494 3.34529 3.41664 3.73416 3.76609 4.18712 4.27324 4.33385 4.69845 4.81232 4.84690 5.03850 5.19524 5.34912 5.44844 5.51422 5.55293 5.61552 5.63757 5.66833 5.83779 5.94841 6.00782 6.01793 6.06668 6.18337 6.29480 6.33962 6.51400 6.85429 7.00195 7.36425 7.55329 8.02589 8.31356 8.39996 8.76139 8.80511 9.39434 10.88844 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.006533 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.307276 B = 4285.149106 C = 5064.226380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.361 5.361 4 O 0.091 5.909 5 C 0.042 3.958 6 C -0.089 4.089 7 C -0.163 4.163 8 C -0.158 4.158 9 C -0.223 4.223 10 C 0.585 3.415 11 O -0.542 6.542 12 N -0.575 5.575 13 C 0.088 3.912 14 C 0.222 3.778 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.526 4.526 18 H 0.079 0.921 19 C 0.081 3.919 20 N -0.889 5.889 21 Si 0.872 3.128 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.263 1.263 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 13.816 -1.739 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 N -0.068 5.068 4 O 0.029 5.971 5 C -0.021 4.021 6 C -0.108 4.108 7 C -0.200 4.200 8 C -0.195 4.195 9 C -0.231 4.231 10 C 0.370 3.630 11 O -0.420 6.420 12 N -0.305 5.305 13 C -0.055 4.055 14 C 0.122 3.878 15 H 0.083 0.917 16 C -0.206 4.206 17 C -0.564 4.564 18 H 0.097 0.903 19 C -0.123 4.123 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.878 14.598 -2.249 14.796 hybrid contribution -0.395 -1.262 -0.633 1.466 sum -1.273 13.336 -2.882 13.703 Atomic orbital electron populations 1.20198 0.85340 1.04098 1.03663 1.24703 0.98472 0.86746 1.01367 1.73566 0.89152 1.23363 1.20720 1.84441 1.21437 1.22631 1.68544 1.23480 0.95725 0.83060 0.99817 1.20562 0.83721 0.99790 1.06750 1.23088 0.97297 0.99974 0.99627 1.23102 1.00944 1.03775 0.91651 1.22076 0.92194 0.96023 1.12783 1.16948 0.78029 0.83448 0.84566 1.90764 1.52192 1.67794 1.31261 1.48324 1.65794 1.12043 1.04352 1.21561 1.01964 0.95146 0.86862 1.19397 0.93369 0.76511 0.98488 0.91684 1.22225 0.97242 1.00646 1.00512 1.21092 1.19973 0.99578 1.15756 0.90306 1.24945 0.94234 0.96620 0.96483 1.69883 1.33014 1.10768 1.38915 0.86931 0.81018 0.77839 0.84347 1.19539 1.21286 1.18774 0.89750 0.90194 0.89685 0.83747 0.87870 0.87376 0.87264 0.88253 0.92697 0.90708 0.93085 0.92997 0.95368 0.92391 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.49 36.00 0.38 -0.54 16 2 C 0.05 0.76 7.37 -79.77 -0.59 0.17 16 3 N -0.36 -5.64 12.01 34.78 0.42 -5.22 16 4 O 0.09 1.37 10.86 18.66 0.20 1.58 16 5 C 0.04 0.66 7.00 -34.63 -0.24 0.42 16 6 C -0.09 -1.24 6.15 -91.77 -0.56 -1.81 16 7 C -0.16 -1.70 10.19 -26.69 -0.27 -1.97 16 8 C -0.16 -1.81 10.24 -26.70 -0.27 -2.08 16 9 C -0.22 -3.92 4.42 -102.89 -0.45 -4.38 16 10 C 0.59 12.24 7.49 -12.53 -0.09 12.15 16 11 O -0.54 -13.33 16.43 5.27 0.09 -13.25 16 12 N -0.57 -11.83 2.75 -176.54 -0.49 -12.32 16 13 C 0.09 1.49 9.35 59.85 0.56 2.05 16 14 C 0.22 5.21 2.30 -69.08 -0.16 5.05 16 15 H 0.07 1.68 4.05 -51.93 -0.21 1.47 16 16 C -0.15 -3.00 9.04 37.16 0.34 -2.66 16 17 C -0.53 -13.98 8.82 -34.44 -0.30 -14.28 16 18 H 0.08 2.22 7.66 -52.49 -0.40 1.82 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 20 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 21 Si 0.87 21.63 26.99 -169.99 -4.59 17.05 16 22 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.30 6.82 56.52 0.39 -5.92 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.14 2.25 8.14 -51.93 -0.42 1.83 16 29 H 0.10 0.99 8.02 -51.93 -0.42 0.58 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.20 6.54 -51.93 -0.34 0.86 16 35 H 0.05 0.75 6.71 -51.93 -0.35 0.40 16 36 H 0.05 0.98 6.89 -51.93 -0.36 0.62 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -31.76 331.97 -5.82 -37.58 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.45 Total: 0.50 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.77 Total: -5.72 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.71 Total: -42.73 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.29 Total: -11.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.59 Total: 17.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.76 -5.82 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.604 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds