Wall clock time and date at job start Tue Mar 31 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30017 * 127.33457 * 2 1 4 4 O 1.20655 * 112.29764 * 179.97438 * 3 2 1 5 5 C 1.33488 * 113.16120 * 359.71654 * 4 3 2 6 6 C 1.50705 * 126.83223 * 180.30787 * 5 4 3 7 7 C 1.52999 * 117.49538 * 8.91886 * 6 5 4 8 8 C 1.52992 * 117.49628 * 300.25833 * 6 5 4 9 9 C 1.37360 * 106.34078 * 0.45252 * 5 4 3 10 10 C 1.47399 * 128.56712 * 179.85768 * 9 5 4 11 11 O 1.21610 * 119.99887 * 269.70044 * 10 9 5 12 12 N 1.34773 * 120.00110 * 89.69814 * 10 9 5 13 13 C 1.46507 * 120.00038 * 359.97438 * 12 10 9 14 14 C 1.46494 * 120.00247 * 180.02562 * 12 10 9 15 15 H 1.09001 * 109.47089 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47192 * 239.99902 * 14 12 10 17 17 C 1.50700 * 109.47463 * 120.00024 * 14 12 10 18 18 H 1.07997 * 120.00176 * 35.01900 * 17 14 12 19 19 C 1.37879 * 120.00072 * 215.02072 * 17 14 12 20 20 N 1.31509 * 120.00003 * 184.89664 * 19 17 14 21 21 Si 1.86805 * 119.99897 * 4.89487 * 19 17 14 22 22 H 1.48493 * 109.47129 * 84.80170 * 21 19 17 23 23 H 1.48501 * 109.46988 * 204.80134 * 21 19 17 24 24 H 1.48500 * 109.46826 * 324.79867 * 21 19 17 25 25 H 1.09005 * 109.47601 * 270.04537 * 1 2 3 26 26 H 1.09004 * 109.47377 * 30.04277 * 1 2 3 27 27 H 1.08995 * 109.47148 * 150.04439 * 1 2 3 28 28 H 1.08996 * 115.54913 * 154.58415 * 6 5 4 29 29 H 1.08998 * 117.50340 * 359.97438 * 7 6 5 30 30 H 1.09002 * 117.49837 * 145.02570 * 7 6 5 31 31 H 1.09005 * 117.49761 * 214.97812 * 8 6 5 32 32 H 1.09001 * 117.50436 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47269 * 269.99878 * 13 12 10 34 34 H 1.09003 * 109.47145 * 149.99623 * 13 12 10 35 35 H 1.09001 * 109.46770 * 30.00617 * 13 12 10 36 36 H 1.09001 * 109.47276 * 294.83893 * 16 14 12 37 37 H 1.08998 * 109.47064 * 54.83867 * 16 14 12 38 38 H 1.09000 * 109.46989 * 174.83751 * 16 14 12 39 39 H 0.97008 * 119.99937 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6007 0.0070 6 6 4.9712 -1.3246 0.0159 7 6 6.2338 -0.4870 0.2283 8 6 5.9243 -1.0691 -1.1532 9 6 2.3991 -1.1696 0.0006 10 6 2.0400 -2.5992 0.0009 11 8 1.8927 -3.1893 -1.0522 12 7 1.8750 -3.2523 1.1682 13 6 2.0530 -2.5415 2.4369 14 6 1.5186 -4.6733 1.1685 15 1 1.4308 -5.0261 0.1409 16 6 0.1821 -4.8638 1.8886 17 6 2.5892 -5.4596 1.8803 18 1 3.1021 -5.0291 2.7276 19 6 2.9139 -6.7285 1.4498 20 7 3.7782 -7.4518 2.1275 21 14 2.1260 -7.4204 -0.0963 22 1 2.8920 -6.9703 -1.2861 23 1 2.1342 -8.9041 -0.0345 24 1 0.7256 -6.9369 -0.1970 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5131 28 1 4.9550 -2.3276 0.4422 29 1 6.1085 0.5876 0.3611 30 1 7.0485 -0.9392 0.7938 31 1 6.5356 -1.9040 -1.4960 32 1 5.5953 -0.3778 -1.9291 33 1 3.0937 -2.6160 2.7521 34 1 1.4105 -2.9872 3.1963 35 1 1.7871 -1.4926 2.3060 36 1 0.2943 -4.5969 2.9395 37 1 -0.5721 -4.2243 1.4299 38 1 -0.1280 -5.9057 1.8094 39 1 4.0069 -8.3444 1.8244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518824832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:58 Heat of formation + Delta-G solvation = 31.986358 kcal Electronic energy + Delta-G solvation = -22441.885867 eV Core-core repulsion = 19160.228647 eV Total energy + Delta-G solvation = -3281.657220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.96020 -40.79952 -38.37302 -37.25735 -35.71236 -34.68547 -33.03055 -31.84090 -29.76868 -27.85433 -27.28514 -26.00090 -24.57801 -23.37804 -22.71346 -20.86321 -20.11526 -19.34221 -18.84267 -18.36169 -17.68968 -17.32329 -16.86106 -16.32405 -15.73557 -15.24064 -14.81458 -14.50186 -14.45941 -14.30558 -14.22677 -14.07846 -13.82857 -13.38957 -13.11904 -13.04868 -13.04267 -12.57940 -12.55932 -12.45794 -12.34107 -12.17281 -11.84864 -11.47349 -11.32415 -11.17743 -10.90946 -10.80113 -10.19232 -9.50050 -8.37897 -6.42053 0.17490 0.80502 1.27031 1.33644 1.37794 1.41331 1.64753 2.23099 2.27329 2.75633 2.98445 3.08358 3.13406 3.56216 3.65278 3.84714 3.94770 4.17484 4.28060 4.40726 4.44575 4.51235 4.57133 4.57877 4.67985 4.70005 4.73846 4.75270 4.88036 4.89495 5.00812 5.07201 5.09522 5.16950 5.34016 5.50459 5.71665 6.11413 6.56375 6.63810 7.09726 7.10674 7.26912 8.77085 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.006533 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.307276 B = 4285.149106 C = 5064.226380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.057 3.943 3 N -0.367 5.367 4 O 0.096 5.904 5 C 0.061 3.939 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.152 4.152 9 C -0.258 4.258 10 C 0.589 3.411 11 O -0.587 6.587 12 N -0.578 5.578 13 C 0.090 3.910 14 C 0.222 3.778 15 H 0.042 0.958 16 C -0.141 4.141 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.035 3.965 20 N -0.930 5.930 21 Si 0.919 3.081 22 H -0.284 1.284 23 H -0.276 1.276 24 H -0.249 1.249 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 15.706 -1.689 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 N -0.075 5.075 4 O 0.036 5.964 5 C -0.002 4.002 6 C -0.144 4.144 7 C -0.169 4.169 8 C -0.190 4.190 9 C -0.265 4.265 10 C 0.376 3.624 11 O -0.469 6.469 12 N -0.307 5.307 13 C -0.053 4.053 14 C 0.120 3.880 15 H 0.060 0.940 16 C -0.199 4.199 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.166 4.166 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.173 1.173 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.513 16.516 -2.169 16.727 hybrid contribution -0.127 -1.759 -0.617 1.868 sum -1.640 14.758 -2.786 15.108 Atomic orbital electron populations 1.20367 0.83129 1.04689 1.05221 1.25121 0.99767 0.85606 1.00061 1.73557 0.89211 1.23267 1.21513 1.84443 1.21455 1.21995 1.68474 1.23698 0.95827 0.83209 0.97495 1.20566 0.84555 0.99512 1.09814 1.23232 0.95006 1.00279 0.98431 1.23233 0.99555 1.04205 0.91964 1.21783 0.93784 0.94674 1.16287 1.17257 0.76802 0.84630 0.83727 1.90725 1.54158 1.69229 1.32784 1.48228 1.65456 1.11216 1.05769 1.21703 1.01971 0.96276 0.85342 1.19244 0.93993 0.77715 0.97032 0.94009 1.22095 0.95729 1.00999 1.01099 1.21286 1.20088 0.99571 1.14828 0.92630 1.25553 0.94960 0.97280 0.98759 1.69974 1.34939 1.11377 1.40585 0.86173 0.80806 0.77769 0.80801 1.21059 1.20177 1.17330 0.87611 0.88168 0.90479 0.86193 0.86431 0.85674 0.86526 0.87659 0.93267 0.89624 0.90596 0.91598 0.93063 0.92805 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.49 71.23 0.75 -0.93 16 2 C 0.06 1.65 7.37 45.15 0.33 1.99 16 3 N -0.37 -10.68 12.01 -44.79 -0.54 -11.22 16 4 O 0.10 2.71 10.86 77.03 0.84 3.54 16 5 C 0.06 1.85 7.00 25.48 0.18 2.03 16 6 C -0.13 -3.41 6.15 -11.54 -0.07 -3.48 16 7 C -0.13 -2.47 10.19 30.62 0.31 -2.16 16 8 C -0.15 -3.27 10.24 30.62 0.31 -2.96 16 9 C -0.26 -8.85 4.42 -18.74 -0.08 -8.93 16 10 C 0.59 24.66 7.49 86.66 0.65 25.31 16 11 O -0.59 -29.42 16.43 -4.06 -0.07 -29.49 16 12 N -0.58 -23.55 2.75 -830.70 -2.29 -25.84 16 13 C 0.09 2.91 9.35 127.77 1.20 4.10 16 14 C 0.22 10.32 2.30 44.25 0.10 10.42 16 15 H 0.04 2.16 4.05 -2.39 -0.01 2.15 16 16 C -0.14 -5.48 9.04 71.98 0.65 -4.82 16 17 C -0.52 -27.96 8.82 25.60 0.23 -27.74 16 18 H 0.06 3.20 7.66 -2.91 -0.02 3.17 16 19 C 0.03 1.95 5.47 84.66 0.46 2.42 16 20 N -0.93 -55.39 13.96 21.45 0.30 -55.09 16 21 Si 0.92 45.08 26.99 68.60 1.85 46.93 16 22 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.25 -11.56 6.82 99.48 0.68 -10.89 16 25 H 0.11 1.86 8.14 -2.38 -0.02 1.85 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.12 1.89 8.02 -2.39 -0.02 1.87 16 30 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.58 6.54 -2.39 -0.02 2.56 16 35 H 0.08 2.09 6.71 -2.39 -0.02 2.07 16 36 H 0.07 2.35 6.89 -2.39 -0.02 2.33 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -69.42 331.97 6.14 -63.28 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.03 Total: 12.63 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 5.02 Total: -4.75 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -2.53 Total: -92.14 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.85 Total: 46.93 kcal Total: -69.42 6.14 -63.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.268 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds