Wall clock time and date at job start Tue Mar 31 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30016 * 127.34138 * 2 1 4 4 O 1.20656 * 112.30752 * 179.97438 * 3 2 1 5 5 C 1.33500 * 113.15361 * 359.72016 * 4 3 2 6 6 C 1.50696 * 126.82665 * 180.31171 * 5 4 3 7 7 C 1.52995 * 117.50283 * 8.91000 * 6 5 4 8 8 C 1.53000 * 117.49691 * 300.24861 * 6 5 4 9 9 C 1.37364 * 106.33961 * 0.44508 * 5 4 3 10 10 C 1.47395 * 128.55971 * 179.85550 * 9 5 4 11 11 O 1.21599 * 120.00240 * 269.70357 * 10 9 5 12 12 N 1.34780 * 119.99822 * 89.70964 * 10 9 5 13 13 C 1.46498 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.46495 * 120.00002 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47308 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47398 * 119.99746 * 14 12 10 17 17 C 1.50702 * 109.47171 * 239.99670 * 14 12 10 18 18 H 1.08001 * 120.00089 * 325.05166 * 17 14 12 19 19 C 1.37880 * 119.99796 * 145.04858 * 17 14 12 20 20 N 1.31514 * 119.99803 * 176.46655 * 19 17 14 21 21 Si 1.86794 * 120.00028 * 356.46680 * 19 17 14 22 22 H 1.48503 * 109.47007 * 274.92407 * 21 19 17 23 23 H 1.48497 * 109.47373 * 34.92801 * 21 19 17 24 24 H 1.48507 * 109.47179 * 154.92758 * 21 19 17 25 25 H 1.09001 * 109.47392 * 270.04874 * 1 2 3 26 26 H 1.08999 * 109.46885 * 30.04711 * 1 2 3 27 27 H 1.08998 * 109.47572 * 150.04596 * 1 2 3 28 28 H 1.09005 * 115.55110 * 154.58431 * 6 5 4 29 29 H 1.09006 * 117.50232 * 0.02562 * 7 6 5 30 30 H 1.08999 * 117.50120 * 145.01824 * 7 6 5 31 31 H 1.09005 * 117.49849 * 214.97702 * 8 6 5 32 32 H 1.08992 * 117.50031 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47307 * 270.00158 * 13 12 10 34 34 H 1.09006 * 109.47299 * 30.00251 * 13 12 10 35 35 H 1.09005 * 109.47170 * 150.00291 * 13 12 10 36 36 H 1.09004 * 109.47201 * 65.54154 * 16 14 12 37 37 H 1.08997 * 109.47748 * 185.54369 * 16 14 12 38 38 H 1.09001 * 109.47150 * 305.54548 * 16 14 12 39 39 H 0.96994 * 120.00607 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6493 -0.6009 0.0069 6 6 4.9711 -1.3247 0.0159 7 6 6.2338 -0.4873 0.2282 8 6 5.9243 -1.0693 -1.1533 9 6 2.3990 -1.1697 0.0007 10 6 2.0400 -2.5992 0.0009 11 8 1.8926 -3.1893 -1.0521 12 7 1.8749 -3.2524 1.1682 13 6 2.0528 -2.5416 2.4368 14 6 1.5174 -4.6731 1.1685 15 1 1.4290 -5.0257 0.1409 16 6 2.6041 -5.4723 1.8906 17 6 0.2012 -4.8598 1.8783 18 1 -0.0493 -4.2369 2.7243 19 6 -0.6833 -5.8258 1.4475 20 7 -1.8007 -6.0360 2.1085 21 14 -0.2945 -6.8360 -0.0748 22 1 -0.7356 -6.0972 -1.2851 23 1 1.1688 -7.0777 -0.1482 24 1 -1.0079 -8.1365 -0.0014 25 1 -0.3634 0.0009 1.0277 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3634 -0.8904 -0.5131 28 1 4.9549 -2.3278 0.4421 29 1 6.1085 0.5873 0.3618 30 1 7.0484 -0.9394 0.7938 31 1 6.5356 -1.9042 -1.4960 32 1 5.5952 -0.3781 -1.9292 33 1 3.0936 -2.6160 2.7521 34 1 1.7869 -1.4926 2.3060 35 1 1.4104 -2.9873 3.1963 36 1 2.6251 -5.1886 2.9429 37 1 2.3888 -6.5374 1.8057 38 1 3.5726 -5.2601 1.4378 39 1 -2.4232 -6.7152 1.8054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518824834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:03 Heat of formation + Delta-G solvation = 51.102618 kcal Electronic energy + Delta-G solvation = -22394.993470 eV Core-core repulsion = 19114.165193 eV Total energy + Delta-G solvation = -3280.828277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.74253 -39.14571 -37.50647 -35.49974 -34.43055 -32.73712 -31.64636 -30.20085 -28.62059 -26.32317 -25.36655 -24.57698 -23.54238 -22.62305 -21.11601 -19.58095 -18.64018 -17.72444 -17.38906 -16.92397 -16.26319 -15.83952 -15.58035 -14.60507 -14.12131 -14.03171 -13.33192 -13.24202 -13.05286 -12.91441 -12.57249 -12.43985 -12.33193 -12.04865 -11.88655 -11.80057 -11.44569 -11.41141 -11.17755 -11.12000 -10.76596 -10.59663 -10.50839 -9.86741 -9.76310 -9.47457 -9.30083 -8.99947 -8.66996 -7.79319 -6.22315 -4.25386 1.37540 2.06535 2.83403 3.01161 3.27537 3.34675 3.41391 3.60042 3.75412 4.15646 4.29312 4.33620 4.56412 4.70025 4.78328 5.01085 5.19569 5.37017 5.39661 5.45059 5.59609 5.62910 5.69185 5.73162 5.77932 5.85427 5.86730 5.92003 6.19460 6.22778 6.29825 6.32834 6.50619 6.84448 6.99989 7.37434 7.54726 8.01912 8.32966 8.39977 8.75401 8.80486 9.39466 10.89283 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.005904 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.392945 B = 4741.026546 C = 5284.922762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.361 5.361 4 O 0.091 5.909 5 C 0.032 3.968 6 C -0.086 4.086 7 C -0.163 4.163 8 C -0.158 4.158 9 C -0.219 4.219 10 C 0.585 3.415 11 O -0.541 6.541 12 N -0.574 5.574 13 C 0.085 3.915 14 C 0.223 3.777 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.080 0.920 19 C 0.082 3.918 20 N -0.889 5.889 21 Si 0.872 3.128 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.287 1.287 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 10.297 -1.685 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.068 5.068 4 O 0.030 5.970 5 C -0.031 4.031 6 C -0.105 4.105 7 C -0.200 4.200 8 C -0.195 4.195 9 C -0.226 4.226 10 C 0.370 3.630 11 O -0.420 6.420 12 N -0.304 5.304 13 C -0.059 4.059 14 C 0.123 3.877 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.564 4.564 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.196 1.196 23 H -0.188 1.188 24 H -0.213 1.213 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.590 11.148 -2.197 16.959 hybrid contribution -0.167 -1.317 -0.629 1.470 sum 12.422 9.831 -2.826 16.092 Atomic orbital electron populations 1.20243 0.85028 1.04240 1.04070 1.24775 0.98666 0.86547 1.00682 1.73572 0.89067 1.23307 1.20856 1.84444 1.21561 1.22431 1.68588 1.23385 0.95468 0.83379 1.00876 1.20438 0.83960 0.99389 1.06730 1.23091 0.97097 1.00227 0.99592 1.23107 1.00853 1.03795 0.91756 1.22105 0.92167 0.96143 1.12197 1.16967 0.77966 0.83518 0.84596 1.90763 1.52160 1.67770 1.31271 1.48319 1.65478 1.12305 1.04347 1.21612 1.00597 0.96189 0.87476 1.19375 0.94222 0.75697 0.98446 0.91724 1.22218 0.97088 1.00670 1.00543 1.21091 0.99765 1.19645 1.15942 0.90245 1.24942 0.94388 0.96521 0.96424 1.69875 1.10057 1.33208 1.39442 0.86927 0.79261 0.79715 0.84175 1.19553 1.18759 1.21270 0.89445 0.90252 0.89321 0.84441 0.87740 0.87504 0.87388 0.88113 0.93736 0.92824 0.89640 0.93010 0.92438 0.95502 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.49 36.00 0.38 -0.75 16 2 C 0.06 0.91 7.37 -79.77 -0.59 0.32 16 3 N -0.36 -5.76 12.01 34.78 0.42 -5.35 16 4 O 0.09 1.35 10.86 18.64 0.20 1.56 16 5 C 0.03 0.47 7.00 -34.63 -0.24 0.23 16 6 C -0.09 -1.02 6.14 -91.78 -0.56 -1.58 16 7 C -0.16 -1.39 10.19 -26.70 -0.27 -1.67 16 8 C -0.16 -1.51 10.24 -26.69 -0.27 -1.78 16 9 C -0.22 -3.84 4.42 -102.89 -0.45 -4.30 16 10 C 0.58 12.24 7.49 -12.53 -0.09 12.15 16 11 O -0.54 -13.32 16.43 5.28 0.09 -13.24 16 12 N -0.57 -11.83 2.75 -176.54 -0.49 -12.31 16 13 C 0.08 1.43 9.42 59.85 0.56 1.99 16 14 C 0.22 5.21 2.27 -69.08 -0.16 5.05 16 15 H 0.06 1.67 4.11 -51.93 -0.21 1.45 16 16 C -0.15 -2.96 9.09 37.16 0.34 -2.62 16 17 C -0.53 -14.02 8.72 -34.44 -0.30 -14.32 16 18 H 0.08 2.23 6.82 -52.49 -0.36 1.88 16 19 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 20 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 21 Si 0.87 21.67 26.91 -169.99 -4.57 17.09 16 22 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.27 6.73 56.52 0.38 -5.89 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.10 0.87 8.02 -51.93 -0.42 0.45 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.84 6.71 -51.93 -0.35 0.49 16 35 H 0.08 1.52 6.56 -51.93 -0.34 1.18 16 36 H 0.05 0.97 7.86 -51.93 -0.41 0.57 16 37 H 0.06 1.18 7.97 -51.93 -0.41 0.76 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -31.90 331.83 -5.80 -37.70 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.46 Total: -0.04 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.76 Total: -5.10 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.71 Total: -42.98 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.29 Total: -11.68 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.57 Total: 17.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.90 -5.80 -37.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.805 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds