Wall clock time and date at job start Tue Mar 31 2020 00:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32349 * 120.44979 * 2 1 4 4 C 1.31773 * 120.81978 * 180.27204 * 3 2 1 5 5 N 1.31813 * 121.75654 * 0.02562 * 4 3 2 6 6 C 1.32318 * 120.81731 * 0.02562 * 5 4 3 7 7 C 1.38585 * 120.44650 * 180.27569 * 2 1 3 8 8 C 1.50700 * 120.80019 * 359.70600 * 7 2 1 9 9 O 1.45193 * 109.47090 * 180.02562 * 8 7 2 10 10 C 1.34234 * 116.99770 * 179.97438 * 9 8 7 11 11 O 1.20819 * 120.00295 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99800 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47223 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47548 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47344 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99535 * 179.97438 * 18 16 15 20 20 Si 1.86789 * 120.00393 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47393 * 89.99526 * 20 18 16 22 22 H 1.48498 * 109.47429 * 209.99689 * 20 18 16 23 23 H 1.48506 * 109.47076 * 330.00003 * 20 18 16 24 24 H 1.08998 * 109.47054 * 269.72066 * 1 2 3 25 25 H 1.08996 * 109.47023 * 29.72222 * 1 2 3 26 26 H 1.09001 * 109.47143 * 149.72600 * 1 2 3 27 27 H 1.08005 * 119.12328 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.44543 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.47240 * 300.00089 * 8 7 2 30 30 H 1.08997 * 109.46966 * 59.99452 * 8 7 2 31 31 H 1.08998 * 109.47197 * 300.00244 * 12 10 9 32 32 H 1.09008 * 109.46987 * 60.00209 * 12 10 9 33 33 H 1.09006 * 109.47078 * 299.99855 * 13 12 10 34 34 H 1.08998 * 109.47587 * 60.00333 * 13 12 10 35 35 H 1.09000 * 109.47440 * 300.00002 * 14 13 12 36 36 H 1.09008 * 109.47104 * 59.99954 * 14 13 12 37 37 H 1.09000 * 109.47078 * 300.00623 * 15 14 13 38 38 H 1.09008 * 109.46630 * 60.00062 * 15 14 13 39 39 H 0.97005 * 119.99744 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4954 1.1495 -0.0054 5 7 4.1964 0.0332 -0.0114 6 6 3.5945 -1.1452 -0.0128 7 6 2.2092 -1.1947 -0.0057 8 6 1.4843 -2.5159 -0.0055 9 8 2.4516 -3.5987 -0.0115 10 6 1.9656 -4.8500 -0.0115 11 8 0.7716 -5.0343 -0.0062 12 6 2.9094 -6.0248 -0.0182 13 6 2.1043 -7.3258 -0.0174 14 6 3.0625 -8.5186 -0.0236 15 6 2.2574 -9.8197 -0.0222 16 6 3.2011 -10.9944 -0.0289 17 1 4.2684 -10.8297 -0.0332 18 6 2.7019 -12.2797 -0.0294 19 7 3.5256 -13.3050 -0.0358 20 14 0.8559 -12.5648 -0.0226 21 1 0.3610 -12.6374 -1.4209 22 1 0.5545 -13.8400 0.6761 23 1 0.1845 -11.4433 0.6824 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8924 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 4.0149 2.0963 -0.0048 28 1 4.1747 -2.0561 -0.0174 29 1 0.8630 -2.5893 0.8871 30 1 0.8551 -2.5853 -0.8928 31 1 3.5333 -5.9846 -0.9111 32 1 3.5418 -5.9879 0.8689 33 1 1.4801 -7.3663 0.8753 34 1 1.4723 -7.3625 -0.9047 35 1 3.6870 -8.4784 -0.9160 36 1 3.6943 -8.4818 0.8640 37 1 1.6331 -9.8596 0.8705 38 1 1.6253 -9.8567 -0.9095 39 1 3.1745 -14.2093 -0.0365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525895979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:33 Heat of formation + Delta-G solvation = -64.122326 kcal Electronic energy + Delta-G solvation = -20125.449568 eV Core-core repulsion = 16839.624763 eV Total energy + Delta-G solvation = -3285.824805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63245 -40.58600 -37.11389 -35.18468 -35.01718 -33.71880 -32.66757 -30.47078 -29.38667 -27.74196 -26.13068 -23.83591 -23.01899 -22.39137 -20.63982 -20.13780 -18.34218 -17.36632 -17.22983 -17.06369 -16.65564 -16.60306 -15.69989 -14.95172 -14.69591 -14.24334 -14.16778 -13.74884 -13.66267 -13.50357 -13.00636 -12.88418 -12.62974 -12.56581 -12.28645 -11.82858 -11.32080 -11.29472 -11.21466 -10.96288 -10.85238 -10.65062 -10.63561 -9.91903 -9.73678 -9.72233 -9.68326 -9.57579 -9.17268 -8.52888 -6.03766 -4.01683 0.37232 0.61367 2.07788 2.29318 3.27679 3.32020 3.39446 3.44105 3.55822 3.75922 3.99836 4.10131 4.41934 4.46459 4.62493 4.73343 4.78934 4.96541 5.00788 5.01974 5.11577 5.12043 5.30698 5.38509 5.46379 5.57578 5.88465 5.94783 5.97612 6.12569 6.27403 6.53442 6.55816 6.69717 6.90753 7.31137 7.43912 7.57839 7.63812 7.80555 8.54333 9.01145 9.59129 11.09640 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.002414 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.250886 B =11595.750619 C =12179.344362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.184 3.816 3 N -0.519 5.519 4 C 0.295 3.705 5 N -0.522 5.522 6 C 0.173 3.827 7 C -0.200 4.200 8 C 0.119 3.881 9 O -0.361 6.361 10 C 0.465 3.535 11 O -0.503 6.503 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.198 0.802 28 H 0.179 0.821 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 28.898 0.115 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.038 3.962 3 N -0.234 5.234 4 C 0.008 3.992 5 N -0.236 5.236 6 C 0.008 3.992 7 C -0.205 4.205 8 C 0.044 3.956 9 O -0.279 6.279 10 C 0.308 3.692 11 O -0.389 6.389 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.215 0.785 28 H 0.196 0.804 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.677 29.559 0.118 29.788 hybrid contribution -1.394 -0.974 -0.010 1.701 sum -5.071 28.585 0.108 29.032 Atomic orbital electron populations 1.20897 0.87576 1.04561 1.04170 1.21473 0.97672 0.87247 0.89807 1.68344 1.10588 1.29535 1.14908 1.25056 0.86698 0.97302 0.90188 1.68529 1.41728 0.99094 1.14223 1.23241 0.91367 0.96620 0.87995 1.21261 0.96990 0.95693 1.06521 1.21477 0.89475 0.80936 1.03688 1.86442 1.40894 1.15814 1.84753 1.24235 0.89712 0.83437 0.71833 1.90682 1.17601 1.85745 1.44890 1.21620 0.97763 0.89596 1.05931 1.21619 0.98470 0.91619 1.03229 1.21478 0.97523 0.93671 1.01331 1.19575 0.96175 0.93145 0.96359 1.21163 0.94606 0.89408 1.50685 0.91037 1.25052 0.97824 0.96168 0.94604 1.69924 1.34610 0.98551 1.51281 0.86769 0.86292 0.77657 0.78525 1.20319 1.21435 1.18949 0.89128 0.89395 0.89860 0.78528 0.80376 0.89208 0.89208 0.87511 0.87506 0.91484 0.91485 0.92543 0.92520 0.96583 0.97024 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.84 36.00 0.35 -0.26 16 2 C 0.18 1.52 6.82 -82.24 -0.56 0.96 16 3 N -0.52 -4.77 10.38 -10.80 -0.11 -4.89 16 4 C 0.30 2.51 12.28 -92.16 -1.13 1.38 16 5 N -0.52 -5.10 10.44 -14.58 -0.15 -5.25 16 6 C 0.17 1.58 10.64 -17.20 -0.18 1.40 16 7 C -0.20 -1.70 5.91 -104.35 -0.62 -2.32 16 8 C 0.12 0.99 4.68 36.01 0.17 1.16 16 9 O -0.36 -3.58 8.80 -39.27 -0.35 -3.92 16 10 C 0.46 5.52 7.96 36.01 0.29 5.81 16 11 O -0.50 -7.42 15.73 -18.74 -0.29 -7.71 16 12 C -0.11 -1.25 5.81 -27.88 -0.16 -1.42 16 13 C -0.11 -1.69 4.50 -26.73 -0.12 -1.81 16 14 C -0.10 -1.89 5.15 -26.73 -0.14 -2.03 16 15 C -0.02 -0.36 4.04 -27.89 -0.11 -0.47 16 16 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 18 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 20 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.36 6.79 -51.93 -0.35 0.01 16 27 H 0.20 1.02 8.06 -52.48 -0.42 0.60 16 28 H 0.18 1.41 7.11 -52.48 -0.37 1.04 16 29 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.09 0.69 7.57 -51.93 -0.39 0.30 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -33.84 334.07 -8.11 -41.95 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.69 Total: -4.30 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.65 Total: -10.94 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.51 Total: -37.33 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.64 Total: -11.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.84 -8.11 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525895979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.171 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds