Wall clock time and date at job start Tue Mar 31 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32349 * 120.44979 * 2 1 4 4 C 1.31773 * 120.81978 * 180.27204 * 3 2 1 5 5 N 1.31813 * 121.75654 * 0.02562 * 4 3 2 6 6 C 1.32318 * 120.81731 * 0.02562 * 5 4 3 7 7 C 1.38585 * 120.44650 * 180.27569 * 2 1 3 8 8 C 1.50700 * 120.80019 * 359.70600 * 7 2 1 9 9 O 1.45193 * 109.47090 * 180.02562 * 8 7 2 10 10 C 1.34234 * 116.99770 * 179.97438 * 9 8 7 11 11 O 1.20819 * 120.00295 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99800 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47223 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47548 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47344 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99535 * 179.97438 * 18 16 15 20 20 Si 1.86789 * 120.00393 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47393 * 89.99526 * 20 18 16 22 22 H 1.48498 * 109.47429 * 209.99689 * 20 18 16 23 23 H 1.48506 * 109.47076 * 330.00003 * 20 18 16 24 24 H 1.08998 * 109.47054 * 269.72066 * 1 2 3 25 25 H 1.08996 * 109.47023 * 29.72222 * 1 2 3 26 26 H 1.09001 * 109.47143 * 149.72600 * 1 2 3 27 27 H 1.08005 * 119.12328 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.44543 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.47240 * 300.00089 * 8 7 2 30 30 H 1.08997 * 109.46966 * 59.99452 * 8 7 2 31 31 H 1.08998 * 109.47197 * 300.00244 * 12 10 9 32 32 H 1.09008 * 109.46987 * 60.00209 * 12 10 9 33 33 H 1.09006 * 109.47078 * 299.99855 * 13 12 10 34 34 H 1.08998 * 109.47587 * 60.00333 * 13 12 10 35 35 H 1.09000 * 109.47440 * 300.00002 * 14 13 12 36 36 H 1.09008 * 109.47104 * 59.99954 * 14 13 12 37 37 H 1.09000 * 109.47078 * 300.00623 * 15 14 13 38 38 H 1.09008 * 109.46630 * 60.00062 * 15 14 13 39 39 H 0.97005 * 119.99744 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4954 1.1495 -0.0054 5 7 4.1964 0.0332 -0.0114 6 6 3.5945 -1.1452 -0.0128 7 6 2.2092 -1.1947 -0.0057 8 6 1.4843 -2.5159 -0.0055 9 8 2.4516 -3.5987 -0.0115 10 6 1.9656 -4.8500 -0.0115 11 8 0.7716 -5.0343 -0.0062 12 6 2.9094 -6.0248 -0.0182 13 6 2.1043 -7.3258 -0.0174 14 6 3.0625 -8.5186 -0.0236 15 6 2.2574 -9.8197 -0.0222 16 6 3.2011 -10.9944 -0.0289 17 1 4.2684 -10.8297 -0.0332 18 6 2.7019 -12.2797 -0.0294 19 7 3.5256 -13.3050 -0.0358 20 14 0.8559 -12.5648 -0.0226 21 1 0.3610 -12.6374 -1.4209 22 1 0.5545 -13.8400 0.6761 23 1 0.1845 -11.4433 0.6824 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8924 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 4.0149 2.0963 -0.0048 28 1 4.1747 -2.0561 -0.0174 29 1 0.8630 -2.5893 0.8871 30 1 0.8551 -2.5853 -0.8928 31 1 3.5333 -5.9846 -0.9111 32 1 3.5418 -5.9879 0.8689 33 1 1.4801 -7.3663 0.8753 34 1 1.4723 -7.3625 -0.9047 35 1 3.6870 -8.4784 -0.9160 36 1 3.6943 -8.4818 0.8640 37 1 1.6331 -9.8596 0.8705 38 1 1.6253 -9.8567 -0.9095 39 1 3.1745 -14.2093 -0.0365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525895979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:32 Heat of formation + Delta-G solvation = -83.674473 kcal Electronic energy + Delta-G solvation = -20126.297413 eV Core-core repulsion = 16839.624763 eV Total energy + Delta-G solvation = -3286.672650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.28036 -41.45603 -38.01107 -36.64759 -35.62213 -34.64869 -34.35553 -32.03512 -29.98300 -28.58620 -27.53248 -24.73968 -23.87362 -23.43527 -21.91634 -21.47982 -19.12672 -18.82179 -18.01768 -17.96729 -17.88862 -17.41378 -16.50413 -16.30460 -15.98060 -15.48384 -14.84530 -14.76696 -14.72576 -14.22497 -13.98226 -13.83916 -13.81260 -13.74392 -13.39127 -13.29888 -12.86602 -12.34917 -12.12755 -12.08543 -11.94964 -11.74522 -11.69959 -11.59378 -11.36372 -11.30485 -11.22117 -10.74347 -10.35411 -10.32670 -8.27946 -6.31157 -0.24600 -0.02708 1.17664 1.36625 1.38243 1.48852 1.50602 2.37424 2.64628 3.02643 3.07637 3.17185 3.39754 3.44677 3.69178 3.90775 4.01050 4.10629 4.15522 4.19685 4.42719 4.51886 4.59050 4.63329 4.63906 4.77851 4.81479 4.85478 5.02460 5.12867 5.18250 5.22076 5.35469 5.37656 5.62223 5.67347 5.70465 5.90603 6.31311 6.70000 6.77645 7.00701 7.33626 8.88639 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.002414 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.250886 B =11595.750619 C =12179.344362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.179 3.821 3 N -0.535 5.535 4 C 0.289 3.711 5 N -0.543 5.543 6 C 0.162 3.838 7 C -0.204 4.204 8 C 0.120 3.880 9 O -0.356 6.356 10 C 0.473 3.527 11 O -0.535 6.535 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.530 4.530 17 H 0.036 0.964 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.248 1.248 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.223 0.777 28 H 0.186 0.814 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 30.527 0.122 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.033 3.967 3 N -0.250 5.250 4 C 0.002 3.998 5 N -0.257 5.257 6 C -0.003 4.003 7 C -0.208 4.208 8 C 0.045 3.955 9 O -0.273 6.273 10 C 0.317 3.683 11 O -0.424 6.424 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.133 4.133 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.054 0.946 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.773 3.227 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.172 1.172 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.240 0.760 28 H 0.203 0.797 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.075 31.220 0.124 31.630 hybrid contribution -0.854 -1.428 -0.012 1.664 sum -5.929 29.792 0.112 30.376 Atomic orbital electron populations 1.20998 0.85672 1.05323 1.05107 1.21932 0.98988 0.86940 0.88815 1.68428 1.10936 1.29996 1.15643 1.25608 0.86813 0.98015 0.89314 1.68559 1.42290 0.99611 1.15192 1.23441 0.91907 0.96877 0.88059 1.21264 0.96769 0.95856 1.06908 1.21601 0.89202 0.80178 1.04484 1.86416 1.41141 1.15487 1.84226 1.24195 0.89111 0.84024 0.70938 1.90679 1.18862 1.86229 1.46590 1.21519 0.97325 0.87473 1.08053 1.21395 0.97807 0.92162 1.02643 1.21334 0.97602 0.92707 1.01643 1.19581 0.95793 0.93804 0.96309 1.21565 0.93998 0.91423 1.49844 0.94572 1.26039 1.03246 0.95938 0.94367 1.70075 1.37092 0.99177 1.52955 0.85667 0.79855 0.78032 0.79150 1.19261 1.21042 1.17203 0.87960 0.88993 0.88729 0.76036 0.79716 0.88455 0.88411 0.85401 0.85417 0.92164 0.92082 0.92264 0.92289 0.96547 0.96661 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.84 71.24 0.70 -0.30 16 2 C 0.18 2.69 6.82 42.56 0.29 2.98 16 3 N -0.54 -9.18 10.38 -188.08 -1.95 -11.13 16 4 C 0.29 4.61 12.28 180.88 2.22 6.83 16 5 N -0.54 -10.10 10.44 -200.04 -2.09 -12.18 16 6 C 0.16 2.77 10.64 84.71 0.90 3.67 16 7 C -0.20 -3.15 5.91 -19.69 -0.12 -3.27 16 8 C 0.12 1.76 4.68 71.24 0.33 2.09 16 9 O -0.36 -6.24 8.80 -51.45 -0.45 -6.69 16 10 C 0.47 10.12 7.96 71.24 0.57 10.69 16 11 O -0.53 -14.75 15.73 21.98 0.35 -14.41 16 12 C -0.11 -2.10 5.81 29.85 0.17 -1.93 16 13 C -0.10 -2.87 4.50 30.59 0.14 -2.74 16 14 C -0.10 -3.38 5.15 30.59 0.16 -3.22 16 15 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 16 C -0.53 -30.48 9.66 25.60 0.25 -30.24 16 17 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 18 C 0.00 0.03 5.47 84.65 0.46 0.49 16 19 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 20 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 24 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.61 6.79 -2.39 -0.02 0.59 16 27 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.19 2.70 7.11 -2.91 -0.02 2.68 16 29 H 0.10 1.31 8.13 -2.38 -0.02 1.29 16 30 H 0.10 1.30 7.57 -2.39 -0.02 1.28 16 31 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.13 2.03 8.14 -2.38 -0.02 2.02 16 33 H 0.06 1.78 8.10 -2.38 -0.02 1.76 16 34 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 37 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 38 H 0.02 0.69 7.57 -2.38 -0.02 0.67 16 39 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -73.20 334.07 5.22 -67.99 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.98 Total: 5.10 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 6.20 Total: -15.62 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.74 Total: -83.04 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.11 Total: -21.10 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -73.20 5.22 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525895979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.689 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds