Wall clock time and date at job start Tue Mar 31 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30865 * 125.88793 * 2 1 4 4 N 1.40060 * 108.30899 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.02327 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47013 * 89.97398 * 5 4 3 7 7 H 1.07997 * 119.99765 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00015 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 119.99838 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47273 * 89.99963 * 10 8 6 12 12 H 1.48505 * 109.47457 * 209.99738 * 10 8 6 13 13 H 1.48500 * 109.47616 * 329.99780 * 10 8 6 14 14 C 1.35241 * 107.96135 * 359.73245 * 4 3 2 15 15 C 1.50705 * 126.16355 * 180.29653 * 14 4 3 16 16 C 1.35630 * 107.67270 * 0.42683 * 14 4 3 17 17 O 1.36188 * 126.08529 * 179.83837 * 16 14 4 18 18 C 1.34194 * 116.99963 * 269.71516 * 17 16 14 19 19 O 1.21207 * 120.00068 * 0.27364 * 18 17 16 20 20 C 1.50706 * 119.99685 * 179.97438 * 18 17 16 21 21 H 1.08997 * 115.55323 * 34.33256 * 20 18 17 22 22 C 1.52999 * 117.49765 * 248.62109 * 20 18 17 23 23 C 1.53000 * 117.49444 * 179.97438 * 20 18 17 24 24 H 1.09006 * 117.49961 * 214.98023 * 23 20 18 25 25 C 1.53003 * 117.49996 * 359.97438 * 23 20 18 26 26 H 1.09004 * 109.47067 * 269.97253 * 1 2 3 27 27 H 1.08990 * 109.47523 * 29.97991 * 1 2 3 28 28 H 1.09002 * 109.46756 * 149.98288 * 1 2 3 29 29 H 1.09002 * 109.47592 * 209.97631 * 5 4 3 30 30 H 1.08996 * 109.46991 * 329.97805 * 5 4 3 31 31 H 0.97000 * 119.99945 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47591 * 270.16843 * 15 14 4 33 33 H 1.08999 * 109.47225 * 30.17710 * 15 14 4 34 34 H 1.09008 * 109.46475 * 150.17311 * 15 14 4 35 35 H 1.08998 * 117.49904 * 359.97438 * 22 20 18 36 36 H 1.09000 * 117.49617 * 145.02755 * 22 20 18 37 37 H 1.09000 * 109.47455 * 59.99793 * 25 23 20 38 38 H 1.09002 * 109.47019 * 180.02562 * 25 23 20 39 39 H 1.09005 * 109.46722 * 299.99669 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6372 -0.0006 5 6 4.7885 1.5065 -0.0003 6 6 5.1927 1.8041 1.4207 7 1 4.6280 1.3871 2.2414 8 6 6.2835 2.6089 1.6730 9 7 6.6360 2.8690 2.9130 10 14 7.2598 3.3308 0.2535 11 1 6.6872 4.6486 -0.1216 12 1 8.6760 3.5055 0.6648 13 1 7.1925 2.4123 -0.9114 14 6 3.6183 -0.7151 0.0051 15 6 4.8409 -1.5963 0.0129 16 6 2.3288 -1.1355 -0.0005 17 8 1.9073 -2.4306 -0.0007 18 6 1.7189 -3.0098 -1.1964 19 8 1.9280 -2.3835 -2.2129 20 6 1.2536 -4.4410 -1.2754 21 1 0.5680 -4.7566 -0.4890 22 6 2.2454 -5.4779 -1.8066 23 6 1.0568 -5.0440 -2.6677 24 1 0.2422 -5.7567 -2.7970 25 6 1.3467 -4.1476 -3.8732 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 5.6091 1.0060 -0.5143 30 1 4.5528 2.4386 -0.5137 31 1 7.4036 3.4348 3.0905 32 1 5.1410 -1.8106 -1.0129 33 1 5.6533 -1.0859 0.5301 34 1 4.6125 -2.5299 0.5272 35 1 3.2341 -5.1248 -2.0994 36 1 2.2124 -6.4759 -1.3696 37 1 2.3873 -3.8244 -3.8438 38 1 1.1647 -4.7046 -4.7923 39 1 0.6942 -3.2750 -3.8424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526979291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:24 Heat of formation + Delta-G solvation = 18.209991 kcal Electronic energy + Delta-G solvation = -21825.657151 eV Core-core repulsion = 18543.402543 eV Total energy + Delta-G solvation = -3282.254608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31726 -40.05051 -37.81123 -35.86202 -34.06587 -32.59576 -31.04347 -29.42756 -28.91951 -26.88099 -26.24100 -24.82993 -22.46065 -21.56358 -20.53093 -19.43114 -19.20351 -17.68375 -17.18900 -16.63534 -15.83467 -15.39926 -14.96515 -14.58706 -14.14226 -13.72139 -13.45722 -13.17616 -13.01045 -12.96768 -12.69098 -12.55121 -12.39804 -12.22351 -12.08687 -11.98442 -11.80109 -11.72444 -11.12941 -10.99193 -10.78709 -10.52798 -10.35760 -10.31084 -10.03290 -9.77394 -9.73755 -8.83897 -8.43220 -7.74873 -6.32060 -4.36506 2.19376 2.26777 2.65972 3.10644 3.15086 3.18675 3.24511 3.45502 3.58784 4.16569 4.35619 4.54904 4.69597 4.91430 4.98226 5.09440 5.11721 5.27094 5.42355 5.49847 5.58773 5.69493 5.70436 5.79279 5.84675 5.87407 5.91055 6.03093 6.04877 6.21753 6.30086 6.33987 6.46412 6.61123 6.76407 7.16945 7.20517 7.60350 8.18782 8.22339 8.33078 8.71970 9.22182 10.80161 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026143 B = 0.004412 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.756734 B = 6344.322273 C = 6718.552951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.062 3.938 3 N -0.278 5.278 4 N -0.313 5.313 5 C 0.231 3.769 6 C -0.546 4.546 7 H 0.082 0.918 8 C 0.081 3.919 9 N -0.883 5.883 10 Si 0.873 3.127 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.108 3.892 15 C -0.094 4.094 16 C -0.100 4.100 17 O -0.249 6.249 18 C 0.469 3.531 19 O -0.491 6.491 20 C -0.165 4.165 21 H 0.134 0.866 22 C -0.148 4.148 23 C -0.119 4.119 24 H 0.116 0.884 25 C -0.117 4.117 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.270 0.730 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 -15.985 -9.595 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.102 5.102 4 N -0.093 5.093 5 C 0.112 3.888 6 C -0.584 4.584 7 H 0.100 0.900 8 C -0.123 4.123 9 N -0.520 5.520 10 Si 0.699 3.301 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.189 1.189 14 C -0.025 4.025 15 C -0.153 4.153 16 C -0.153 4.153 17 O -0.161 6.161 18 C 0.312 3.688 19 O -0.377 6.377 20 C -0.184 4.184 21 H 0.152 0.848 22 C -0.185 4.185 23 C -0.137 4.137 24 H 0.134 0.866 25 C -0.174 4.174 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.576 -14.278 -9.782 19.316 hybrid contribution 0.608 -0.257 -0.391 0.767 sum -7.968 -14.535 -10.173 19.449 Atomic orbital electron populations 1.20031 0.87084 1.02460 1.02621 1.22285 0.96901 0.89873 1.01343 1.77377 0.87000 1.21584 1.24213 1.48685 1.05757 1.03548 1.51322 1.20103 0.78997 0.89670 1.00033 1.21146 1.14367 1.32757 0.90127 0.89968 1.24790 0.96514 0.95183 0.95848 1.69868 1.26842 1.36641 1.18633 0.86903 0.80054 0.80580 0.82585 1.19480 1.20400 1.18876 1.20857 0.95963 0.86109 0.99574 1.20460 0.94037 0.98018 1.02749 1.17572 0.90554 0.82104 1.25099 1.84685 1.76358 1.23752 1.31284 1.23351 0.74347 0.88468 0.82602 1.90759 1.46393 1.64681 1.35851 1.21778 1.06206 0.89153 1.01275 0.84783 1.23177 0.95204 0.97948 1.02165 1.22511 1.00262 1.00592 0.90322 0.86595 1.21434 1.03275 0.98260 0.94407 0.90561 0.90953 0.91625 0.93116 0.93132 0.91995 0.90831 0.89123 0.90169 0.87955 0.87260 0.91649 0.92947 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.44 36.00 0.38 -0.60 16 2 C 0.06 1.26 7.23 -82.28 -0.59 0.67 16 3 N -0.28 -6.49 12.57 33.73 0.42 -6.06 16 4 N -0.31 -7.37 3.60 -58.16 -0.21 -7.58 16 5 C 0.23 5.57 4.89 -5.19 -0.03 5.55 16 6 C -0.55 -15.19 9.94 -34.44 -0.34 -15.54 16 7 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 8 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 9 N -0.88 -26.00 13.96 55.43 0.77 -25.23 16 10 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 14 C 0.11 2.27 6.95 -82.02 -0.57 1.70 16 15 C -0.09 -1.62 9.87 36.01 0.36 -1.26 16 16 C -0.10 -2.01 5.34 -39.79 -0.21 -2.22 16 17 O -0.25 -4.29 10.13 -24.25 -0.25 -4.54 16 18 C 0.47 7.11 7.67 36.01 0.28 7.38 16 19 O -0.49 -8.68 12.87 -19.06 -0.25 -8.93 16 20 C -0.16 -1.72 6.30 -91.77 -0.58 -2.30 16 21 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 22 C -0.15 -1.25 9.88 -26.70 -0.26 -1.51 16 23 C -0.12 -1.05 6.41 -90.59 -0.58 -1.63 16 24 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.12 -1.24 8.43 37.16 0.31 -0.92 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.14 6.75 -51.93 -0.35 0.79 16 30 H 0.05 1.22 7.57 -51.93 -0.39 0.82 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.62 7.75 -51.93 -0.40 1.22 16 34 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.85 7.27 -51.93 -0.38 0.47 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -32.71 334.21 -6.78 -39.49 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.70 Total: 0.96 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.94 Total: -8.53 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.99 Total: -38.88 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.49 Total: -13.46 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.71 -6.78 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526979291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds