Wall clock time and date at job start Tue Mar 31 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30865 * 125.88793 * 2 1 4 4 N 1.40060 * 108.30899 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.02327 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47013 * 89.97398 * 5 4 3 7 7 H 1.07997 * 119.99765 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00015 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 119.99838 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47273 * 89.99963 * 10 8 6 12 12 H 1.48505 * 109.47457 * 209.99738 * 10 8 6 13 13 H 1.48500 * 109.47616 * 329.99780 * 10 8 6 14 14 C 1.35241 * 107.96135 * 359.73245 * 4 3 2 15 15 C 1.50705 * 126.16355 * 180.29653 * 14 4 3 16 16 C 1.35630 * 107.67270 * 0.42683 * 14 4 3 17 17 O 1.36188 * 126.08529 * 179.83837 * 16 14 4 18 18 C 1.34194 * 116.99963 * 269.71516 * 17 16 14 19 19 O 1.21207 * 120.00068 * 0.27364 * 18 17 16 20 20 C 1.50706 * 119.99685 * 179.97438 * 18 17 16 21 21 H 1.08997 * 115.55323 * 34.33256 * 20 18 17 22 22 C 1.52999 * 117.49765 * 248.62109 * 20 18 17 23 23 C 1.53000 * 117.49444 * 179.97438 * 20 18 17 24 24 H 1.09006 * 117.49961 * 214.98023 * 23 20 18 25 25 C 1.53003 * 117.49996 * 359.97438 * 23 20 18 26 26 H 1.09004 * 109.47067 * 269.97253 * 1 2 3 27 27 H 1.08990 * 109.47523 * 29.97991 * 1 2 3 28 28 H 1.09002 * 109.46756 * 149.98288 * 1 2 3 29 29 H 1.09002 * 109.47592 * 209.97631 * 5 4 3 30 30 H 1.08996 * 109.46991 * 329.97805 * 5 4 3 31 31 H 0.97000 * 119.99945 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47591 * 270.16843 * 15 14 4 33 33 H 1.08999 * 109.47225 * 30.17710 * 15 14 4 34 34 H 1.09008 * 109.46475 * 150.17311 * 15 14 4 35 35 H 1.08998 * 117.49904 * 359.97438 * 22 20 18 36 36 H 1.09000 * 117.49617 * 145.02755 * 22 20 18 37 37 H 1.09000 * 109.47455 * 59.99793 * 25 23 20 38 38 H 1.09002 * 109.47019 * 180.02562 * 25 23 20 39 39 H 1.09005 * 109.46722 * 299.99669 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6372 -0.0006 5 6 4.7885 1.5065 -0.0003 6 6 5.1927 1.8041 1.4207 7 1 4.6280 1.3871 2.2414 8 6 6.2835 2.6089 1.6730 9 7 6.6360 2.8690 2.9130 10 14 7.2598 3.3308 0.2535 11 1 6.6872 4.6486 -0.1216 12 1 8.6760 3.5055 0.6648 13 1 7.1925 2.4123 -0.9114 14 6 3.6183 -0.7151 0.0051 15 6 4.8409 -1.5963 0.0129 16 6 2.3288 -1.1355 -0.0005 17 8 1.9073 -2.4306 -0.0007 18 6 1.7189 -3.0098 -1.1964 19 8 1.9280 -2.3835 -2.2129 20 6 1.2536 -4.4410 -1.2754 21 1 0.5680 -4.7566 -0.4890 22 6 2.2454 -5.4779 -1.8066 23 6 1.0568 -5.0440 -2.6677 24 1 0.2422 -5.7567 -2.7970 25 6 1.3467 -4.1476 -3.8732 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 5.6091 1.0060 -0.5143 30 1 4.5528 2.4386 -0.5137 31 1 7.4036 3.4348 3.0905 32 1 5.1410 -1.8106 -1.0129 33 1 5.6533 -1.0859 0.5301 34 1 4.6125 -2.5299 0.5272 35 1 3.2341 -5.1248 -2.0994 36 1 2.2124 -6.4759 -1.3696 37 1 2.3873 -3.8244 -3.8438 38 1 1.1647 -4.7046 -4.7923 39 1 0.6942 -3.2750 -3.8424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526979291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:23 Heat of formation + Delta-G solvation = -1.472215 kcal Electronic energy + Delta-G solvation = -21826.510636 eV Core-core repulsion = 18543.402543 eV Total energy + Delta-G solvation = -3283.108093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.79019 -41.36403 -38.86203 -37.02504 -35.90048 -34.45554 -32.68943 -31.03745 -29.78170 -28.30802 -27.93701 -26.01261 -24.21756 -22.54546 -21.60003 -20.86291 -20.71431 -19.30642 -18.95848 -17.88487 -17.25205 -16.62617 -16.50042 -15.99523 -15.68316 -15.08407 -14.86175 -14.65002 -14.29813 -14.22599 -14.10076 -13.89024 -13.62149 -13.60069 -13.38370 -13.25959 -13.18039 -12.93300 -12.61817 -12.45726 -12.40005 -12.05434 -11.86038 -11.39074 -11.32969 -11.24104 -10.96593 -10.94767 -10.11168 -9.35824 -8.45782 -6.58067 0.72803 1.06518 1.17160 1.31215 1.33685 1.42438 1.56826 2.17789 2.21762 2.76707 2.86061 3.48211 3.57889 3.62476 3.83627 3.90474 4.02922 4.16946 4.34473 4.42461 4.46038 4.47639 4.52123 4.67210 4.72174 4.77443 4.81702 4.89505 4.92401 4.95373 5.02334 5.11181 5.14063 5.16393 5.33499 5.51649 5.72968 5.86304 6.18621 6.44601 6.68446 6.91540 7.05848 8.70659 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026143 B = 0.004412 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.756734 B = 6344.322273 C = 6718.552951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 N -0.322 5.322 4 N -0.340 5.340 5 C 0.240 3.760 6 C -0.555 4.555 7 H 0.027 0.973 8 C 0.027 3.973 9 N -0.932 5.932 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.238 1.238 14 C 0.091 3.909 15 C -0.090 4.090 16 C -0.103 4.103 17 O -0.251 6.251 18 C 0.466 3.534 19 O -0.521 6.521 20 C -0.178 4.178 21 H 0.161 0.839 22 C -0.134 4.134 23 C -0.111 4.111 24 H 0.150 0.850 25 C -0.117 4.117 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.275 0.725 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 -18.283 -11.458 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 N -0.146 5.146 4 N -0.120 5.120 5 C 0.121 3.879 6 C -0.593 4.593 7 H 0.045 0.955 8 C -0.174 4.174 9 N -0.570 5.570 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.161 1.161 14 C -0.041 4.041 15 C -0.148 4.148 16 C -0.156 4.156 17 O -0.163 6.163 18 C 0.312 3.688 19 O -0.408 6.408 20 C -0.197 4.197 21 H 0.178 0.822 22 C -0.170 4.170 23 C -0.129 4.129 24 H 0.168 0.832 25 C -0.174 4.174 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.017 -16.612 -11.648 22.202 hybrid contribution 0.618 0.344 0.236 0.745 sum -8.399 -16.268 -11.412 21.573 Atomic orbital electron populations 1.20206 0.83851 1.03758 1.04123 1.23095 0.98963 0.89432 0.99340 1.77283 0.87439 1.23428 1.26404 1.48591 1.05607 1.04384 1.53453 1.19866 0.80157 0.90348 0.97522 1.21187 1.14279 1.33035 0.90789 0.95473 1.25780 0.97452 0.95151 0.99018 1.70016 1.27844 1.37713 1.21453 0.85715 0.78163 0.79991 0.79201 1.18955 1.19487 1.16092 1.21542 0.97829 0.85677 0.99061 1.20550 0.92176 0.97946 1.04097 1.17692 0.90325 0.83445 1.24154 1.84689 1.76446 1.22222 1.32937 1.24292 0.73291 0.89975 0.81259 1.90759 1.47835 1.65746 1.36508 1.21991 1.08057 0.86214 1.03417 0.82192 1.23348 0.94235 0.98519 1.00940 1.22685 1.01628 1.00183 0.88422 0.83196 1.21388 1.01181 0.98201 0.96673 0.88808 0.90007 0.89925 0.91020 0.93089 0.91527 0.88834 0.90283 0.88140 0.89190 0.83884 0.94038 0.90770 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.44 71.23 0.74 -1.08 16 2 C 0.06 2.38 7.23 43.17 0.31 2.70 16 3 N -0.32 -15.46 12.57 -47.18 -0.59 -16.05 16 4 N -0.34 -16.43 3.60 -337.93 -1.22 -17.65 16 5 C 0.24 11.79 4.89 85.63 0.42 12.21 16 6 C -0.55 -32.14 9.94 25.60 0.25 -31.89 16 7 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 8 C 0.03 1.50 5.47 84.66 0.46 1.96 16 9 N -0.93 -56.63 13.96 21.45 0.30 -56.33 16 10 Si 0.95 41.16 27.47 68.60 1.88 43.04 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 14 C 0.09 3.87 6.95 41.43 0.29 4.15 16 15 C -0.09 -3.04 9.87 71.24 0.70 -2.34 16 16 C -0.10 -4.14 5.34 22.14 0.12 -4.02 16 17 O -0.25 -8.41 10.13 2.20 0.02 -8.39 16 18 C 0.47 13.53 7.67 71.24 0.55 14.08 16 19 O -0.52 -18.26 12.87 20.79 0.27 -17.99 16 20 C -0.18 -3.18 6.30 -11.54 -0.07 -3.25 16 21 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 22 C -0.13 -1.77 9.88 30.61 0.30 -1.47 16 23 C -0.11 -1.59 6.41 -10.78 -0.07 -1.66 16 24 H 0.15 1.18 8.14 -2.38 -0.02 1.16 16 25 C -0.12 -2.30 8.43 71.98 0.61 -1.69 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 3.17 6.75 -2.39 -0.02 3.16 16 30 H 0.05 2.47 7.57 -2.39 -0.02 2.45 16 31 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 2.85 7.75 -2.39 -0.02 2.83 16 34 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.09 1.45 8.05 -2.39 -0.02 1.43 16 36 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 0.99 7.01 -2.39 -0.02 0.98 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.12 7.27 -2.38 -0.02 1.10 16 Total: -1.00 -75.64 334.21 6.27 -69.37 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.99 Total: 16.30 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.62 Total: -12.30 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.51 Total: -90.03 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.29 Total: -26.39 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal Total: -75.64 6.27 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526979291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.899 kcal (2) G-P(sol) polarization free energy of solvation -75.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds