Wall clock time and date at job start Tue Mar 31 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30860 * 125.88805 * 2 1 4 4 N 1.40069 * 108.30408 * 180.29599 * 3 2 1 5 5 C 1.46501 * 126.01639 * 179.68030 * 4 3 2 6 6 C 1.50696 * 109.47526 * 270.04407 * 5 4 3 7 7 H 1.08001 * 119.99619 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00266 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99740 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47469 * 89.99704 * 10 8 6 12 12 H 1.48502 * 109.46953 * 209.99769 * 10 8 6 13 13 H 1.48500 * 109.47188 * 329.99694 * 10 8 6 14 14 C 1.35232 * 107.96328 * 359.72057 * 4 3 2 15 15 C 1.50698 * 126.16295 * 180.02562 * 14 4 3 16 16 C 1.35636 * 107.67398 * 359.97438 * 14 4 3 17 17 O 1.36182 * 126.08161 * 180.02562 * 16 14 4 18 18 C 1.34191 * 116.99927 * 90.00558 * 17 16 14 19 19 O 1.21205 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99874 * 179.97438 * 18 17 16 21 21 H 1.08999 * 115.55393 * 325.72671 * 20 18 17 22 22 C 1.53006 * 117.49542 * 111.39138 * 20 18 17 23 23 C 1.52997 * 117.49714 * 180.02562 * 20 18 17 24 24 H 1.09002 * 117.49910 * 145.02535 * 23 20 18 25 25 C 1.53001 * 117.49889 * 0.02562 * 23 20 18 26 26 H 1.09001 * 109.46666 * 270.17366 * 1 2 3 27 27 H 1.08999 * 109.47276 * 30.16715 * 1 2 3 28 28 H 1.09001 * 109.47276 * 150.17264 * 1 2 3 29 29 H 1.09005 * 109.47347 * 30.04525 * 5 4 3 30 30 H 1.09006 * 109.46955 * 150.03777 * 5 4 3 31 31 H 0.97003 * 119.99927 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47435 * 269.97096 * 15 14 4 33 33 H 1.09000 * 109.47221 * 29.97280 * 15 14 4 34 34 H 1.08998 * 109.46995 * 149.96650 * 15 14 4 35 35 H 1.08990 * 117.50086 * 214.97802 * 22 20 18 36 36 H 1.09004 * 117.49623 * 0.02562 * 22 20 18 37 37 H 1.08998 * 109.46673 * 299.97655 * 25 23 20 38 38 H 1.08994 * 109.47426 * 59.98444 * 25 23 20 39 39 H 1.09000 * 109.47070 * 179.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6370 -0.0069 5 6 4.7885 1.5064 -0.0158 6 6 5.1839 1.8022 -1.4396 7 1 4.6141 1.3840 -2.2562 8 6 6.2737 2.6058 -1.6997 9 7 6.9678 3.1145 -0.7053 10 14 6.7641 2.9717 -3.4646 11 1 6.0637 4.1958 -3.9294 12 1 8.2322 3.1840 -3.5365 13 1 6.3866 1.8263 -4.3310 14 6 3.6183 -0.7153 -0.0047 15 6 4.8408 -1.5964 -0.0097 16 6 2.3288 -1.1356 0.0038 17 8 1.9073 -2.4306 0.0090 18 6 1.7258 -3.0074 1.2069 19 8 1.9365 -2.3777 2.2209 20 6 1.2600 -4.4381 1.2915 21 1 0.5701 -4.7549 0.5094 22 6 2.2542 -5.4747 1.8189 23 6 1.0713 -5.0383 2.6861 24 1 0.2571 -5.7502 2.8217 25 6 1.3694 -4.1398 3.8882 26 1 -0.3633 0.0031 1.0277 27 1 -0.3634 0.8885 -0.5164 28 1 -0.3634 -0.8915 -0.5111 29 1 4.5561 2.4393 0.4980 30 1 5.6123 1.0065 0.4938 31 1 7.7343 3.6802 -0.8883 32 1 5.1299 -1.8110 -1.0385 33 1 5.6588 -1.0859 0.4987 34 1 4.6180 -2.5297 0.5073 35 1 2.2180 -6.4735 1.3841 36 1 3.2450 -5.1216 2.1051 37 1 2.4101 -3.8179 3.8518 38 1 0.7177 -3.2666 3.8596 39 1 1.1926 -4.6949 4.8094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526979292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:28 Heat of formation + Delta-G solvation = 12.588248 kcal Electronic energy + Delta-G solvation = -21786.095346 eV Core-core repulsion = 18503.596961 eV Total energy + Delta-G solvation = -3282.498385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24631 -39.98335 -37.76526 -35.81727 -34.01664 -32.59694 -30.85885 -29.07912 -28.88587 -26.78192 -25.99923 -24.79192 -22.76256 -21.56838 -20.49044 -19.36455 -19.16592 -17.62012 -16.85788 -16.48967 -15.76088 -15.37870 -14.89411 -14.45028 -14.31909 -13.68234 -13.36440 -13.10669 -12.97624 -12.83830 -12.63911 -12.52393 -12.37425 -12.04508 -11.99800 -11.73246 -11.68762 -11.55637 -11.05970 -10.95291 -10.81300 -10.49601 -10.33974 -10.32444 -10.03095 -9.78443 -9.69791 -8.69034 -8.36869 -7.68927 -6.30973 -4.39046 2.23746 2.35061 2.72661 3.19359 3.25374 3.26628 3.34144 3.50426 3.63302 4.25797 4.38382 4.57660 4.73221 4.98550 5.04606 5.13328 5.17502 5.32275 5.46523 5.54065 5.62460 5.72417 5.74039 5.82472 5.89770 5.94086 5.94405 6.09295 6.13671 6.26276 6.34030 6.48670 6.69721 6.92823 6.99545 7.27953 7.59130 7.80259 7.82826 8.24948 8.43607 8.67013 9.27613 10.76847 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.004216 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.336270 B = 6640.440237 C = 6975.516919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.280 5.280 4 N -0.313 5.313 5 C 0.257 3.743 6 C -0.540 4.540 7 H 0.066 0.934 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.104 3.896 15 C -0.083 4.083 16 C -0.104 4.104 17 O -0.250 6.250 18 C 0.468 3.532 19 O -0.490 6.490 20 C -0.165 4.165 21 H 0.134 0.866 22 C -0.149 4.149 23 C -0.119 4.119 24 H 0.116 0.884 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 -16.336 4.291 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 N -0.105 5.105 4 N -0.093 5.093 5 C 0.140 3.860 6 C -0.578 4.578 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.735 3.265 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.030 4.030 15 C -0.142 4.142 16 C -0.157 4.157 17 O -0.162 6.162 18 C 0.311 3.689 19 O -0.376 6.376 20 C -0.184 4.184 21 H 0.152 0.848 22 C -0.186 4.186 23 C -0.137 4.137 24 H 0.134 0.866 25 C -0.174 4.174 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.100 -14.611 4.652 17.830 hybrid contribution 0.374 -0.446 -1.013 1.169 sum -8.726 -15.057 3.639 17.779 Atomic orbital electron populations 1.20055 0.87270 1.02853 1.02294 1.22259 0.96825 0.89928 1.01715 1.77375 0.87319 1.21628 1.24131 1.49160 1.06087 1.03665 1.50428 1.19800 0.77528 0.89368 0.99277 1.21288 1.13418 1.32017 0.91081 0.91622 1.24929 0.95553 0.94892 0.98311 1.69920 1.18964 1.32629 1.31270 0.86322 0.77645 0.79029 0.83514 1.20234 1.20818 1.19604 1.20872 0.95842 0.86452 0.99830 1.20335 0.93394 0.96937 1.03501 1.17594 0.90571 0.82053 1.25515 1.84678 1.76420 1.23907 1.31169 1.23346 0.74402 0.88477 0.82662 1.90763 1.46235 1.64482 1.36099 1.21777 1.06112 0.89251 1.01256 0.84836 1.23173 0.95240 0.97936 1.02214 1.22504 1.00275 1.00590 0.90299 0.86627 1.21432 1.03292 0.98248 0.94413 0.91224 0.90840 0.91028 0.92510 0.92732 0.92142 0.89725 0.90311 0.91375 0.87297 0.87960 0.91632 0.91231 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.44 36.01 0.38 -0.66 16 2 C 0.06 1.21 7.23 -82.28 -0.59 0.62 16 3 N -0.28 -6.68 12.57 33.73 0.42 -6.26 16 4 N -0.31 -7.57 3.60 -58.16 -0.21 -7.78 16 5 C 0.26 6.66 6.00 -5.19 -0.03 6.62 16 6 C -0.54 -14.84 9.39 -34.44 -0.32 -15.16 16 7 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 10 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.10 2.23 6.95 -82.03 -0.57 1.66 16 15 C -0.08 -1.48 10.09 36.00 0.36 -1.11 16 16 C -0.10 -2.12 5.34 -39.79 -0.21 -2.33 16 17 O -0.25 -4.38 10.13 -24.23 -0.25 -4.62 16 18 C 0.47 7.27 7.67 36.01 0.28 7.54 16 19 O -0.49 -8.93 12.87 -19.05 -0.25 -9.17 16 20 C -0.16 -1.77 6.30 -91.77 -0.58 -2.34 16 21 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.15 -1.29 9.88 -26.71 -0.26 -1.56 16 23 C -0.12 -1.08 6.41 -90.61 -0.58 -1.67 16 24 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.12 -1.28 8.43 37.16 0.31 -0.97 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.05 1.39 7.06 -51.93 -0.37 1.03 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 38 H 0.07 0.88 7.26 -51.93 -0.38 0.51 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -31.63 336.91 -7.07 -38.70 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.67 Total: -0.06 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.92 Total: -7.64 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.95 Total: -38.25 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.49 Total: -13.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.63 -7.07 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526979292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.292 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds