Wall clock time and date at job start Tue Mar 31 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30860 * 125.88805 * 2 1 4 4 N 1.40069 * 108.30408 * 180.29599 * 3 2 1 5 5 C 1.46501 * 126.01639 * 179.68030 * 4 3 2 6 6 C 1.50696 * 109.47526 * 270.04407 * 5 4 3 7 7 H 1.08001 * 119.99619 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00266 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99740 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47469 * 89.99704 * 10 8 6 12 12 H 1.48502 * 109.46953 * 209.99769 * 10 8 6 13 13 H 1.48500 * 109.47188 * 329.99694 * 10 8 6 14 14 C 1.35232 * 107.96328 * 359.72057 * 4 3 2 15 15 C 1.50698 * 126.16295 * 180.02562 * 14 4 3 16 16 C 1.35636 * 107.67398 * 359.97438 * 14 4 3 17 17 O 1.36182 * 126.08161 * 180.02562 * 16 14 4 18 18 C 1.34191 * 116.99927 * 90.00558 * 17 16 14 19 19 O 1.21205 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99874 * 179.97438 * 18 17 16 21 21 H 1.08999 * 115.55393 * 325.72671 * 20 18 17 22 22 C 1.53006 * 117.49542 * 111.39138 * 20 18 17 23 23 C 1.52997 * 117.49714 * 180.02562 * 20 18 17 24 24 H 1.09002 * 117.49910 * 145.02535 * 23 20 18 25 25 C 1.53001 * 117.49889 * 0.02562 * 23 20 18 26 26 H 1.09001 * 109.46666 * 270.17366 * 1 2 3 27 27 H 1.08999 * 109.47276 * 30.16715 * 1 2 3 28 28 H 1.09001 * 109.47276 * 150.17264 * 1 2 3 29 29 H 1.09005 * 109.47347 * 30.04525 * 5 4 3 30 30 H 1.09006 * 109.46955 * 150.03777 * 5 4 3 31 31 H 0.97003 * 119.99927 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47435 * 269.97096 * 15 14 4 33 33 H 1.09000 * 109.47221 * 29.97280 * 15 14 4 34 34 H 1.08998 * 109.46995 * 149.96650 * 15 14 4 35 35 H 1.08990 * 117.50086 * 214.97802 * 22 20 18 36 36 H 1.09004 * 117.49623 * 0.02562 * 22 20 18 37 37 H 1.08998 * 109.46673 * 299.97655 * 25 23 20 38 38 H 1.08994 * 109.47426 * 59.98444 * 25 23 20 39 39 H 1.09000 * 109.47070 * 179.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6370 -0.0069 5 6 4.7885 1.5064 -0.0158 6 6 5.1839 1.8022 -1.4396 7 1 4.6141 1.3840 -2.2562 8 6 6.2737 2.6058 -1.6997 9 7 6.9678 3.1145 -0.7053 10 14 6.7641 2.9717 -3.4646 11 1 6.0637 4.1958 -3.9294 12 1 8.2322 3.1840 -3.5365 13 1 6.3866 1.8263 -4.3310 14 6 3.6183 -0.7153 -0.0047 15 6 4.8408 -1.5964 -0.0097 16 6 2.3288 -1.1356 0.0038 17 8 1.9073 -2.4306 0.0090 18 6 1.7258 -3.0074 1.2069 19 8 1.9365 -2.3777 2.2209 20 6 1.2600 -4.4381 1.2915 21 1 0.5701 -4.7549 0.5094 22 6 2.2542 -5.4747 1.8189 23 6 1.0713 -5.0383 2.6861 24 1 0.2571 -5.7502 2.8217 25 6 1.3694 -4.1398 3.8882 26 1 -0.3633 0.0031 1.0277 27 1 -0.3634 0.8885 -0.5164 28 1 -0.3634 -0.8915 -0.5111 29 1 4.5561 2.4393 0.4980 30 1 5.6123 1.0065 0.4938 31 1 7.7343 3.6802 -0.8883 32 1 5.1299 -1.8110 -1.0385 33 1 5.6588 -1.0859 0.4987 34 1 4.6180 -2.5297 0.5073 35 1 2.2180 -6.4735 1.3841 36 1 3.2450 -5.1216 2.1051 37 1 2.4101 -3.8179 3.8518 38 1 0.7177 -3.2666 3.8596 39 1 1.1926 -4.6949 4.8094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526979292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:27 Heat of formation + Delta-G solvation = -5.089180 kcal Electronic energy + Delta-G solvation = -21786.861897 eV Core-core repulsion = 18503.596961 eV Total energy + Delta-G solvation = -3283.264936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.76355 -41.34697 -38.85013 -37.02663 -35.91812 -34.40898 -32.52429 -30.72721 -29.78428 -28.23418 -27.79872 -26.04733 -24.55625 -22.54845 -21.58972 -20.86001 -20.70242 -18.96762 -18.85835 -17.83145 -17.23677 -16.69042 -16.41469 -16.00876 -15.79860 -14.98457 -14.77692 -14.56850 -14.29395 -14.19849 -14.07749 -13.68711 -13.60995 -13.45499 -13.36455 -13.24258 -13.13518 -12.90749 -12.71967 -12.45529 -12.40226 -12.28608 -11.79469 -11.37795 -11.31616 -11.24037 -10.96257 -10.78233 -10.11191 -9.35669 -8.38861 -6.56793 0.76740 1.07174 1.18821 1.36599 1.37796 1.48574 1.62418 2.19403 2.31661 2.76646 2.92233 3.50140 3.60398 3.63725 3.84476 3.92721 4.04152 4.18044 4.34209 4.45827 4.48580 4.58213 4.66840 4.73688 4.77142 4.77456 4.82941 4.89560 4.94539 4.96253 5.02238 5.15993 5.18105 5.35377 5.47191 5.52467 5.71890 5.80915 6.03234 6.52216 6.74445 6.92686 7.14540 8.68698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.004216 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.336270 B = 6640.440237 C = 6975.516919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.057 3.943 3 N -0.324 5.324 4 N -0.340 5.340 5 C 0.274 3.726 6 C -0.557 4.557 7 H 0.053 0.947 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.975 3.025 11 H -0.274 1.274 12 H -0.269 1.269 13 H -0.267 1.267 14 C 0.087 3.913 15 C -0.079 4.079 16 C -0.103 4.103 17 O -0.250 6.250 18 C 0.465 3.535 19 O -0.523 6.523 20 C -0.177 4.177 21 H 0.163 0.837 22 C -0.134 4.134 23 C -0.112 4.112 24 H 0.152 0.848 25 C -0.118 4.118 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.275 0.725 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 -19.041 3.363 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.149 5.149 4 N -0.120 5.120 5 C 0.156 3.844 6 C -0.595 4.595 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.556 5.556 10 Si 0.799 3.201 11 H -0.199 1.199 12 H -0.194 1.194 13 H -0.191 1.191 14 C -0.045 4.045 15 C -0.137 4.137 16 C -0.157 4.157 17 O -0.161 6.161 18 C 0.311 3.689 19 O -0.411 6.411 20 C -0.195 4.195 21 H 0.180 0.820 22 C -0.171 4.171 23 C -0.130 4.130 24 H 0.169 0.831 25 C -0.175 4.175 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.097 -17.342 3.734 20.412 hybrid contribution 0.604 0.312 -0.620 0.920 sum -9.493 -17.031 3.114 19.745 Atomic orbital electron populations 1.20242 0.83821 1.04568 1.03549 1.23098 0.98953 0.89375 0.99496 1.77293 0.87561 1.23582 1.26433 1.48928 1.05810 1.04480 1.52801 1.19340 0.78261 0.88508 0.98327 1.21401 1.13921 1.32809 0.91339 0.92897 1.25777 0.95162 0.94235 1.02603 1.70008 1.19335 1.32870 1.33369 0.85293 0.77840 0.78779 0.78223 1.19939 1.19406 1.19133 1.21522 0.97769 0.85813 0.99392 1.20421 0.91832 0.97067 1.04396 1.17667 0.90196 0.83452 1.24394 1.84683 1.76450 1.22269 1.32729 1.24329 0.73272 0.90055 0.81291 1.90769 1.47795 1.65640 1.36877 1.21995 1.07960 0.86157 1.03412 0.81978 1.23346 0.94183 0.98591 1.00977 1.22677 1.01708 1.00196 0.88370 0.83084 1.21385 1.01069 0.98219 0.96812 0.90026 0.89812 0.88606 0.95509 0.93197 0.91592 0.88639 0.90903 0.89127 0.83746 0.89356 0.94218 0.93556 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.91 10.44 71.24 0.74 -1.17 16 2 C 0.06 2.37 7.23 43.17 0.31 2.69 16 3 N -0.32 -16.04 12.57 -47.18 -0.59 -16.64 16 4 N -0.34 -17.14 3.60 -337.93 -1.22 -18.36 16 5 C 0.27 14.94 6.00 85.63 0.51 15.45 16 6 C -0.56 -31.57 9.39 25.60 0.24 -31.33 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.02 1.29 5.46 84.66 0.46 1.76 16 9 N -0.92 -52.31 13.29 21.45 0.28 -52.02 16 10 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 14 C 0.09 3.84 6.95 41.43 0.29 4.12 16 15 C -0.08 -2.82 10.09 71.24 0.72 -2.10 16 16 C -0.10 -4.24 5.34 22.14 0.12 -4.12 16 17 O -0.25 -8.44 10.13 2.29 0.02 -8.42 16 18 C 0.46 13.88 7.67 71.24 0.55 14.43 16 19 O -0.52 -19.16 12.87 20.80 0.27 -18.89 16 20 C -0.18 -3.23 6.30 -11.54 -0.07 -3.30 16 21 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 22 C -0.13 -1.85 9.88 30.61 0.30 -1.55 16 23 C -0.11 -1.67 6.41 -10.78 -0.07 -1.74 16 24 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 25 C -0.12 -2.44 8.43 71.98 0.61 -1.84 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.05 2.70 7.06 -2.38 -0.02 2.69 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.07 2.65 7.09 -2.39 -0.02 2.63 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.50 8.05 -2.38 -0.02 1.48 16 37 H 0.04 1.01 7.02 -2.39 -0.02 0.99 16 38 H 0.05 1.17 7.26 -2.39 -0.02 1.15 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.45 336.91 6.55 -64.91 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.05 Total: 13.03 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.71 Total: -8.70 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -1.53 Total: -87.02 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.29 Total: -27.31 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.45 6.55 -64.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526979292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.816 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds