Wall clock time and date at job start Tue Mar 31 2020 00:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 O 1.33498 * 126.82982 * 2 1 4 4 N 1.20660 * 113.15781 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30172 * 359.72958 * 4 3 2 6 6 C 1.50700 * 127.34040 * 180.27816 * 5 4 3 7 7 C 1.52999 * 117.49544 * 8.89389 * 6 5 4 8 8 C 1.53000 * 117.49697 * 300.23466 * 6 5 4 9 9 C 1.37366 * 126.83139 * 179.97438 * 2 1 3 10 10 C 1.47395 * 128.56152 * 359.96547 * 9 2 1 11 11 O 1.21599 * 120.00054 * 90.02417 * 10 9 2 12 12 N 1.34780 * 120.00008 * 270.02629 * 10 9 2 13 13 C 1.46498 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.46495 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.09002 * 109.47308 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47398 * 119.99746 * 14 12 10 17 17 C 1.50702 * 109.47171 * 239.99670 * 14 12 10 18 18 H 1.08001 * 120.00089 * 325.05166 * 17 14 12 19 19 C 1.37880 * 119.99796 * 145.04858 * 17 14 12 20 20 N 1.31514 * 119.99803 * 176.46655 * 19 17 14 21 21 Si 1.86794 * 120.00028 * 356.46680 * 19 17 14 22 22 H 1.48503 * 109.47007 * 274.92407 * 21 19 17 23 23 H 1.48497 * 109.47373 * 34.92801 * 21 19 17 24 24 H 1.48507 * 109.47179 * 154.92758 * 21 19 17 25 25 H 1.09001 * 109.47515 * 270.00977 * 1 2 3 26 26 H 1.09010 * 109.47248 * 30.00584 * 1 2 3 27 27 H 1.08998 * 109.47204 * 150.00538 * 1 2 3 28 28 H 1.08998 * 115.55465 * 154.56070 * 6 5 4 29 29 H 1.09007 * 117.50056 * 359.97438 * 7 6 5 30 30 H 1.08997 * 117.50385 * 145.02418 * 7 6 5 31 31 H 1.08999 * 117.49780 * 214.97889 * 8 6 5 32 32 H 1.09004 * 117.49507 * 359.97294 * 8 6 5 33 33 H 1.09003 * 109.47307 * 270.00158 * 13 12 10 34 34 H 1.09006 * 109.47299 * 30.00251 * 13 12 10 35 35 H 1.09005 * 109.47170 * 150.00291 * 13 12 10 36 36 H 1.09004 * 109.47201 * 65.54154 * 16 14 12 37 37 H 1.08997 * 109.47748 * 185.54369 * 16 14 12 38 38 H 1.09001 * 109.47150 * 305.54548 * 16 14 12 39 39 H 0.96994 * 120.00607 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3071 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5020 0.0066 6 6 4.9963 -1.2260 0.0149 7 6 6.2591 -0.3884 0.2264 8 6 5.9489 -0.9708 -1.1549 9 6 2.3303 -1.0995 0.0005 10 6 1.9586 -2.5258 0.0018 11 8 1.8052 -3.1151 -1.0507 12 7 1.7887 -3.1768 1.1697 13 6 1.9741 -2.4670 2.4377 14 6 1.4198 -4.5946 1.1710 15 1 1.3281 -4.9471 0.1436 16 6 2.5003 -5.4021 1.8932 17 6 0.1024 -4.7702 1.8814 18 1 -0.1426 -4.1448 2.7271 19 6 -0.7901 -5.7293 1.4516 20 7 -1.9088 -5.9300 2.1132 21 14 -0.4101 -6.7436 -0.0702 22 1 -0.8457 -6.0020 -1.2808 23 1 1.0512 -6.9971 -0.1440 24 1 -1.1339 -8.0382 0.0043 25 1 -0.3634 0.0002 1.0276 26 1 -0.3634 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5137 28 1 4.9804 -2.2289 0.4414 29 1 6.1340 0.6863 0.3591 30 1 7.0742 -0.8404 0.7916 31 1 6.5599 -1.8058 -1.4977 32 1 5.6194 -0.2796 -1.9306 33 1 3.0144 -2.5504 2.7522 34 1 1.7173 -1.4157 2.3065 35 1 1.3283 -2.9066 3.1979 36 1 2.5240 -5.1179 2.9452 37 1 2.2764 -6.4655 1.8090 38 1 3.4703 -5.1981 1.4398 39 1 -2.5369 -6.6044 1.8108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548529662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:53 Heat of formation + Delta-G solvation = 50.379877 kcal Electronic energy + Delta-G solvation = -22364.138365 eV Core-core repulsion = 19083.278748 eV Total energy + Delta-G solvation = -3280.859617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.73496 -39.14159 -37.53889 -35.49346 -33.71644 -32.77956 -32.54198 -30.35673 -27.85290 -26.30600 -25.36402 -24.85140 -23.72424 -22.52920 -21.07181 -19.40527 -18.59915 -17.72655 -17.42562 -16.91581 -16.14867 -15.78405 -15.33658 -14.66281 -14.55810 -13.99366 -13.37235 -13.23261 -13.16990 -12.64178 -12.56353 -12.42351 -12.33556 -12.03561 -11.89667 -11.72881 -11.52319 -11.43409 -11.22713 -11.12259 -10.76849 -10.52543 -10.47293 -9.85656 -9.56196 -9.45805 -9.32235 -9.07138 -8.67745 -7.79030 -6.23134 -4.26223 1.46338 1.96172 2.92318 3.04053 3.27325 3.34339 3.41190 3.71112 3.74083 4.05644 4.32919 4.33324 4.74080 4.84880 4.90371 5.01112 5.18404 5.19463 5.45848 5.48176 5.49552 5.62705 5.67178 5.68468 5.90200 5.92651 5.95990 5.99661 6.04010 6.21764 6.29019 6.33981 6.51233 6.84973 7.00396 7.37324 7.54538 8.01917 8.32163 8.39632 8.75237 8.80028 9.38801 10.88397 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.005835 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.964268 B = 4797.756762 C = 5329.665517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.008 3.992 3 O 0.092 5.908 4 N -0.360 5.360 5 C 0.083 3.917 6 C -0.087 4.087 7 C -0.162 4.162 8 C -0.158 4.158 9 C -0.225 4.225 10 C 0.585 3.415 11 O -0.542 6.542 12 N -0.574 5.574 13 C 0.085 3.915 14 C 0.223 3.777 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.526 4.526 18 H 0.080 0.920 19 C 0.082 3.918 20 N -0.889 5.889 21 Si 0.872 3.128 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.287 1.287 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 10.914 -1.675 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 O 0.030 5.970 4 N -0.067 5.067 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.199 4.199 8 C -0.197 4.197 9 C -0.232 4.232 10 C 0.370 3.630 11 O -0.420 6.420 12 N -0.304 5.304 13 C -0.058 4.058 14 C 0.123 3.877 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.564 4.564 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.195 1.195 23 H -0.188 1.188 24 H -0.213 1.213 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.032 11.524 -2.184 16.102 hybrid contribution -0.293 -1.294 -0.635 1.470 sum 10.739 10.231 -2.819 15.098 Atomic orbital electron populations 1.20468 0.82998 1.05144 1.04852 1.24605 0.96005 0.84940 0.99922 1.84487 1.11023 1.33062 1.68424 1.73483 0.96117 1.16377 1.20686 1.23658 0.94299 0.88630 1.01254 1.20222 0.84835 0.99606 1.05893 1.23029 0.97234 1.00143 0.99514 1.23036 1.01373 1.03532 0.91717 1.22086 0.92209 0.96035 1.12900 1.16962 0.77868 0.83615 0.84571 1.90762 1.52364 1.67577 1.31322 1.48312 1.65256 1.12516 1.04358 1.21605 1.00633 0.96123 0.87467 1.19373 0.94138 0.75776 0.98443 0.91727 1.22218 0.97154 1.00637 1.00538 1.21090 0.99449 1.19951 1.15951 0.90233 1.24937 0.94404 0.96490 0.96422 1.69874 1.09744 1.33541 1.39432 0.86931 0.79249 0.79773 0.84152 1.19549 1.18770 1.21275 0.88606 0.89492 0.88362 0.85460 0.88036 0.87899 0.87744 0.88535 0.93774 0.92860 0.89658 0.93022 0.92447 0.95487 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.33 36.00 0.37 -0.57 16 2 C 0.01 0.12 7.25 -34.63 -0.25 -0.13 16 3 O 0.09 1.36 11.06 18.64 0.21 1.56 16 4 N -0.36 -5.58 11.71 34.78 0.41 -5.17 16 5 C 0.08 1.31 7.08 -79.77 -0.56 0.75 16 6 C -0.09 -1.17 6.31 -91.77 -0.58 -1.75 16 7 C -0.16 -1.73 10.17 -26.69 -0.27 -2.00 16 8 C -0.16 -1.81 10.24 -26.69 -0.27 -2.08 16 9 C -0.22 -3.92 4.47 -102.89 -0.46 -4.38 16 10 C 0.59 12.20 7.46 -12.53 -0.09 12.10 16 11 O -0.54 -13.31 16.43 5.28 0.09 -13.22 16 12 N -0.57 -11.80 2.75 -176.54 -0.49 -12.28 16 13 C 0.09 1.43 9.42 59.85 0.56 2.00 16 14 C 0.22 5.21 2.27 -69.08 -0.16 5.05 16 15 H 0.06 1.67 4.11 -51.93 -0.21 1.45 16 16 C -0.15 -3.00 9.09 37.16 0.34 -2.66 16 17 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 18 H 0.08 2.21 6.82 -52.49 -0.36 1.85 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 20 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 21 Si 0.87 21.56 26.91 -169.99 -4.57 16.98 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.28 6.73 56.52 0.38 -5.90 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.10 1.13 7.97 -51.92 -0.41 0.72 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.81 6.65 -51.93 -0.35 0.47 16 35 H 0.08 1.50 6.56 -51.93 -0.34 1.16 16 36 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 37 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -31.64 331.55 -5.82 -37.46 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.45 Total: 0.47 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.77 Total: -5.70 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.69 Total: -42.55 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.29 Total: -11.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.57 Total: 16.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.64 -5.82 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548529662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.839 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds