Wall clock time and date at job start Tue Mar 31 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 O 1.33498 * 126.82982 * 2 1 4 4 N 1.20660 * 113.15781 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30172 * 359.72958 * 4 3 2 6 6 C 1.50700 * 127.34040 * 180.27816 * 5 4 3 7 7 C 1.52999 * 117.49544 * 8.89389 * 6 5 4 8 8 C 1.53000 * 117.49697 * 300.23466 * 6 5 4 9 9 C 1.37366 * 126.83139 * 179.97438 * 2 1 3 10 10 C 1.47395 * 128.56152 * 359.96547 * 9 2 1 11 11 O 1.21599 * 120.00054 * 90.02417 * 10 9 2 12 12 N 1.34780 * 120.00008 * 270.02629 * 10 9 2 13 13 C 1.46498 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.46495 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.09002 * 109.47308 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47398 * 119.99746 * 14 12 10 17 17 C 1.50702 * 109.47171 * 239.99670 * 14 12 10 18 18 H 1.08001 * 120.00089 * 325.05166 * 17 14 12 19 19 C 1.37880 * 119.99796 * 145.04858 * 17 14 12 20 20 N 1.31514 * 119.99803 * 176.46655 * 19 17 14 21 21 Si 1.86794 * 120.00028 * 356.46680 * 19 17 14 22 22 H 1.48503 * 109.47007 * 274.92407 * 21 19 17 23 23 H 1.48497 * 109.47373 * 34.92801 * 21 19 17 24 24 H 1.48507 * 109.47179 * 154.92758 * 21 19 17 25 25 H 1.09001 * 109.47515 * 270.00977 * 1 2 3 26 26 H 1.09010 * 109.47248 * 30.00584 * 1 2 3 27 27 H 1.08998 * 109.47204 * 150.00538 * 1 2 3 28 28 H 1.08998 * 115.55465 * 154.56070 * 6 5 4 29 29 H 1.09007 * 117.50056 * 359.97438 * 7 6 5 30 30 H 1.08997 * 117.50385 * 145.02418 * 7 6 5 31 31 H 1.08999 * 117.49780 * 214.97889 * 8 6 5 32 32 H 1.09004 * 117.49507 * 359.97294 * 8 6 5 33 33 H 1.09003 * 109.47307 * 270.00158 * 13 12 10 34 34 H 1.09006 * 109.47299 * 30.00251 * 13 12 10 35 35 H 1.09005 * 109.47170 * 150.00291 * 13 12 10 36 36 H 1.09004 * 109.47201 * 65.54154 * 16 14 12 37 37 H 1.08997 * 109.47748 * 185.54369 * 16 14 12 38 38 H 1.09001 * 109.47150 * 305.54548 * 16 14 12 39 39 H 0.96994 * 120.00607 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3071 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5020 0.0066 6 6 4.9963 -1.2260 0.0149 7 6 6.2591 -0.3884 0.2264 8 6 5.9489 -0.9708 -1.1549 9 6 2.3303 -1.0995 0.0005 10 6 1.9586 -2.5258 0.0018 11 8 1.8052 -3.1151 -1.0507 12 7 1.7887 -3.1768 1.1697 13 6 1.9741 -2.4670 2.4377 14 6 1.4198 -4.5946 1.1710 15 1 1.3281 -4.9471 0.1436 16 6 2.5003 -5.4021 1.8932 17 6 0.1024 -4.7702 1.8814 18 1 -0.1426 -4.1448 2.7271 19 6 -0.7901 -5.7293 1.4516 20 7 -1.9088 -5.9300 2.1132 21 14 -0.4101 -6.7436 -0.0702 22 1 -0.8457 -6.0020 -1.2808 23 1 1.0512 -6.9971 -0.1440 24 1 -1.1339 -8.0382 0.0043 25 1 -0.3634 0.0002 1.0276 26 1 -0.3634 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5137 28 1 4.9804 -2.2289 0.4414 29 1 6.1340 0.6863 0.3591 30 1 7.0742 -0.8404 0.7916 31 1 6.5599 -1.8058 -1.4977 32 1 5.6194 -0.2796 -1.9306 33 1 3.0144 -2.5504 2.7522 34 1 1.7173 -1.4157 2.3065 35 1 1.3283 -2.9066 3.1979 36 1 2.5240 -5.1179 2.9452 37 1 2.2764 -6.4655 1.8090 38 1 3.4703 -5.1981 1.4398 39 1 -2.5369 -6.6044 1.8108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548529662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:51 Heat of formation + Delta-G solvation = 31.457936 kcal Electronic energy + Delta-G solvation = -22364.958882 eV Core-core repulsion = 19083.278748 eV Total energy + Delta-G solvation = -3281.680134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.94183 -40.79221 -38.50036 -37.24834 -35.11845 -34.44226 -33.88675 -32.10905 -28.99304 -27.78605 -27.29183 -26.15203 -24.93106 -23.38526 -22.65312 -20.72682 -20.01965 -19.33835 -18.84213 -18.39851 -17.70880 -17.30685 -16.55136 -16.18488 -15.99627 -15.44633 -14.91267 -14.58105 -14.45161 -14.25712 -14.14760 -13.87495 -13.69534 -13.38223 -13.13012 -13.06191 -12.98989 -12.65201 -12.63263 -12.53227 -12.35945 -12.28183 -11.82028 -11.45255 -11.31546 -11.11836 -10.80763 -10.56855 -10.37199 -9.48377 -8.36809 -6.41183 0.25102 0.75386 1.27877 1.34442 1.38823 1.41951 1.76170 2.25247 2.28412 2.77872 2.88018 3.06026 3.22362 3.63201 3.79246 3.87940 3.98925 4.02161 4.29576 4.32776 4.46912 4.54475 4.58636 4.65331 4.66673 4.68136 4.72072 4.77002 4.88304 4.90222 5.01761 5.04246 5.10833 5.14801 5.31433 5.51113 5.72122 6.11958 6.58217 6.64442 7.11785 7.12883 7.27847 8.77926 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.005835 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.964268 B = 4797.756762 C = 5329.665517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.028 3.972 3 O 0.098 5.902 4 N -0.366 5.366 5 C 0.088 3.912 6 C -0.117 4.117 7 C -0.138 4.138 8 C -0.155 4.155 9 C -0.260 4.260 10 C 0.589 3.411 11 O -0.588 6.588 12 N -0.577 5.577 13 C 0.087 3.913 14 C 0.223 3.777 15 H 0.041 0.959 16 C -0.140 4.140 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.036 3.964 20 N -0.930 5.930 21 Si 0.918 3.082 22 H -0.284 1.284 23 H -0.250 1.250 24 H -0.277 1.277 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.382 12.004 -1.528 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 O 0.038 5.962 4 N -0.074 5.074 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.175 4.175 8 C -0.193 4.193 9 C -0.267 4.267 10 C 0.376 3.624 11 O -0.470 6.470 12 N -0.306 5.306 13 C -0.056 4.056 14 C 0.121 3.879 15 H 0.059 0.941 16 C -0.198 4.198 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.165 4.165 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.210 1.210 23 H -0.174 1.174 24 H -0.202 1.202 25 H 0.130 0.870 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.900 12.639 -2.006 18.171 hybrid contribution -0.858 -1.516 -0.654 1.860 sum 12.042 11.124 -2.660 16.608 Atomic orbital electron populations 1.20622 0.81168 1.05755 1.06020 1.24991 0.96886 0.84292 0.97360 1.84494 1.10902 1.32641 1.68202 1.73470 0.96324 1.16121 1.21437 1.23952 0.94605 0.88557 1.00231 1.20377 0.84925 0.99982 1.08322 1.23109 0.95912 0.99666 0.98840 1.23134 1.00507 1.04005 0.91649 1.21793 0.93886 0.94587 1.16469 1.17262 0.76729 0.84734 0.83706 1.90724 1.54384 1.68996 1.32859 1.48217 1.64834 1.11789 1.05791 1.21741 1.01999 0.96458 0.85380 1.19208 0.93879 0.77866 0.96961 0.94079 1.22087 0.96966 0.99729 1.01055 1.21291 1.00634 1.18747 1.15046 0.92284 1.25534 0.94496 0.97843 0.98595 1.69964 1.10916 1.34881 1.41106 0.86190 0.79854 0.78792 0.80786 1.21020 1.17406 1.20247 0.87021 0.86027 0.90538 0.85800 0.88377 0.85364 0.85989 0.89303 0.91220 0.91289 0.90672 0.91732 0.92852 0.93372 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.33 71.23 0.74 -1.04 16 2 C 0.03 0.80 7.25 25.48 0.18 0.99 16 3 O 0.10 2.69 11.06 76.93 0.85 3.54 16 4 N -0.37 -10.68 11.71 -44.77 -0.52 -11.20 16 5 C 0.09 2.66 7.08 45.16 0.32 2.98 16 6 C -0.12 -2.95 6.31 -11.54 -0.07 -3.02 16 7 C -0.14 -2.56 10.17 30.62 0.31 -2.25 16 8 C -0.15 -3.20 10.24 30.62 0.31 -2.89 16 9 C -0.26 -8.81 4.47 -18.74 -0.08 -8.90 16 10 C 0.59 24.46 7.46 86.65 0.65 25.10 16 11 O -0.59 -29.33 16.43 -4.03 -0.07 -29.40 16 12 N -0.58 -23.35 2.75 -830.71 -2.29 -25.64 16 13 C 0.09 2.78 9.42 127.77 1.20 3.98 16 14 C 0.22 10.32 2.27 44.25 0.10 10.42 16 15 H 0.04 2.12 4.11 -2.39 -0.01 2.11 16 16 C -0.14 -5.48 9.09 71.98 0.65 -4.83 16 17 C -0.52 -27.63 8.73 25.60 0.22 -27.41 16 18 H 0.06 3.34 6.82 -2.91 -0.02 3.32 16 19 C 0.04 1.99 5.47 84.66 0.46 2.45 16 20 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 21 Si 0.92 44.82 26.91 68.60 1.85 46.66 16 22 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.25 -11.56 6.73 99.48 0.67 -10.89 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.08 2.12 8.11 -2.39 -0.02 2.10 16 28 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.10 1.92 7.97 -2.38 -0.02 1.90 16 30 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.98 6.65 -2.38 -0.02 1.97 16 35 H 0.07 2.57 6.56 -2.38 -0.02 2.56 16 36 H 0.06 2.33 7.85 -2.38 -0.02 2.32 16 37 H 0.05 2.12 7.97 -2.39 -0.02 2.10 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.05 331.55 6.14 -62.91 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.02 Total: 12.25 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.00 Total: -4.42 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.51 Total: -91.55 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.78 Total: -25.86 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.85 Total: 46.66 kcal Total: -69.05 6.14 -62.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548529662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.365 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds