Wall clock time and date at job start Tue Mar 31 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40370 * 126.64433 * 2 1 4 4 C 1.35126 * 107.11287 * 179.83509 * 3 2 1 5 5 O 1.33929 * 108.76898 * 0.43350 * 4 3 2 6 6 C 1.34915 * 109.38526 * 359.71710 * 5 4 3 7 7 C 1.46659 * 125.98950 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00191 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99580 * 0.03237 * 7 6 5 10 10 C 1.46505 * 119.99458 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.46748 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.36930 * 120.00296 * 270.00251 * 12 11 10 14 14 H 1.08001 * 120.00108 * 144.92601 * 13 12 11 15 15 C 1.38808 * 120.00021 * 324.92268 * 13 12 11 16 16 N 1.31623 * 120.00136 * 337.94228 * 15 13 12 17 17 Si 1.86805 * 120.00361 * 157.93612 * 15 13 12 18 18 H 1.48501 * 109.46984 * 90.00021 * 17 15 13 19 19 H 1.48492 * 109.47377 * 210.00278 * 17 15 13 20 20 H 1.48505 * 109.46738 * 330.00306 * 17 15 13 21 21 C 1.46506 * 119.99562 * 90.00044 * 12 11 10 22 22 C 1.53005 * 117.49406 * 183.23848 * 21 12 11 23 23 C 1.53000 * 117.49853 * 114.57936 * 21 12 11 24 24 H 1.09004 * 109.47130 * 269.68669 * 1 2 3 25 25 H 1.08997 * 109.47217 * 149.69253 * 1 2 3 26 26 H 1.09003 * 109.47569 * 29.68653 * 1 2 3 27 27 H 1.07998 * 126.44082 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.61449 * 180.15272 * 4 3 2 29 29 H 0.96986 * 120.00298 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47293 * 299.99916 * 10 9 7 31 31 H 1.08997 * 109.47146 * 59.99820 * 10 9 7 32 32 H 1.08997 * 109.47819 * 299.99798 * 11 10 9 33 33 H 1.08997 * 109.47408 * 60.00024 * 11 10 9 34 34 H 0.96996 * 120.00357 * 176.06592 * 16 15 13 35 35 H 1.08998 * 115.55090 * 328.90716 * 21 12 11 36 36 H 1.08992 * 117.50145 * 0.02562 * 22 21 12 37 37 H 1.09004 * 117.49531 * 145.02187 * 22 21 12 38 38 H 1.09000 * 117.50040 * 214.97499 * 23 21 12 39 39 H 1.09007 * 117.50074 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6745 0.0037 5 8 3.6005 -0.6646 -0.0036 6 6 2.3220 -1.0955 -0.0059 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0158 9 7 2.7972 -3.4867 -0.0194 10 6 2.3599 -4.8849 -0.0270 11 6 3.5844 -5.8021 -0.0327 12 7 3.1472 -7.2004 -0.0396 13 6 2.9437 -7.8601 1.1429 14 1 2.1523 -8.5905 1.2246 15 6 3.7544 -7.5900 2.2368 16 7 4.9471 -7.0629 2.0577 17 14 3.1529 -7.9745 3.9630 18 1 3.5464 -9.3593 4.3273 19 1 3.7602 -7.0185 4.9233 20 1 1.6737 -7.8515 4.0105 21 6 2.9277 -7.8928 -1.3119 22 6 2.3989 -9.3274 -1.2533 23 6 3.8541 -9.0631 -1.6483 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3634 0.8928 -0.5090 27 1 2.0305 2.1595 -0.0004 28 1 4.5045 1.2917 0.0070 29 1 3.7436 -3.2745 -0.0183 30 1 1.7611 -5.0832 0.8620 31 1 1.7610 -5.0735 -0.9180 32 1 4.1829 -5.6038 -0.9218 33 1 4.1837 -5.6137 0.8581 34 1 5.4907 -6.8213 2.8239 35 1 2.5899 -7.2652 -2.1366 36 1 2.2140 -9.7558 -0.2683 37 1 1.7136 -9.6437 -2.0397 38 1 4.1254 -9.2057 -2.6943 39 1 4.6272 -9.3176 -0.9232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567436782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:38 Heat of formation + Delta-G solvation = 24.145595 kcal Electronic energy + Delta-G solvation = -21346.079436 eV Core-core repulsion = 18064.082215 eV Total energy + Delta-G solvation = -3281.997221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.71548 -39.09380 -37.12369 -35.01365 -34.01796 -33.19479 -31.03166 -30.35126 -28.26029 -26.98571 -24.50716 -22.90568 -21.80543 -21.35255 -20.94649 -19.94795 -19.63205 -18.04945 -16.40381 -16.35381 -15.88541 -15.60534 -15.37399 -14.69736 -14.50644 -14.05745 -13.86785 -13.34283 -13.11476 -13.04373 -12.73805 -12.64156 -12.52668 -11.95122 -11.80751 -11.59630 -11.06246 -10.75767 -10.73253 -10.35427 -10.15944 -9.95752 -9.81895 -9.75162 -9.65897 -9.31223 -8.82496 -8.54069 -8.43247 -6.66282 -5.87265 -3.47320 1.10522 2.28433 2.74025 3.31679 3.37613 3.40417 3.44799 3.53569 4.41241 4.65257 4.71898 4.89639 4.97054 5.26171 5.29390 5.38515 5.47290 5.70556 5.71530 5.88551 5.96529 6.01211 6.07095 6.10074 6.18302 6.25846 6.36889 6.47989 6.48825 6.59317 6.74755 6.85313 6.95241 7.04059 7.19821 7.50782 7.74659 7.82797 8.37728 8.40955 9.06294 9.69266 10.24017 11.09440 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004344 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.602134 B = 6444.751038 C = 7017.095535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.097 4.097 3 C -0.226 4.226 4 C -0.011 4.011 5 O -0.162 6.162 6 C -0.075 4.075 7 C 0.594 3.406 8 O -0.525 6.525 9 N -0.707 5.707 10 C 0.098 3.902 11 C 0.135 3.865 12 N -0.547 5.547 13 C -0.260 4.260 14 H 0.068 0.932 15 C 0.012 3.988 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.118 3.882 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.153 0.847 28 H 0.208 0.792 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 13.928 -5.261 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.245 4.245 4 C -0.081 4.081 5 O -0.057 6.057 6 C -0.128 4.128 7 C 0.379 3.621 8 O -0.404 6.404 9 N -0.356 5.356 10 C -0.027 4.027 11 C 0.008 3.992 12 N -0.263 5.263 13 C -0.389 4.389 14 H 0.086 0.914 15 C -0.188 4.188 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.201 1.201 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.171 0.829 28 H 0.225 0.775 29 H 0.237 0.763 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.501 13.472 -5.118 14.626 hybrid contribution 0.309 0.193 0.940 1.008 sum -2.192 13.665 -4.178 14.457 Atomic orbital electron populations 1.20403 0.88331 1.03403 1.02841 1.20622 0.97654 0.91004 1.00697 1.21712 0.92516 1.00006 1.10312 1.24313 0.99854 0.80802 1.03093 1.84086 1.28519 1.22560 1.70519 1.22153 0.81289 0.95252 1.14060 1.16587 0.86033 0.81715 0.77718 1.90828 1.15769 1.82274 1.51537 1.46037 1.09661 1.07229 1.72706 1.22425 1.00990 0.77586 1.01666 1.21106 0.92638 0.82534 1.02902 1.43220 1.77219 1.05883 1.00022 1.19085 1.10215 1.21884 0.87717 0.91392 1.25125 0.93906 1.00555 0.99259 1.70026 1.07575 1.45141 1.29835 0.86413 0.78861 0.77846 0.84397 1.21137 1.21407 1.20136 1.21244 1.00540 0.87087 0.90168 1.23041 0.96476 1.01615 1.02149 1.23359 0.93707 1.09378 0.99622 0.90942 0.89405 0.91764 0.82895 0.77534 0.76328 0.91184 0.92757 0.94880 0.87585 0.93463 0.89443 0.88412 0.90675 0.91169 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.82 36.00 0.35 -0.79 16 2 C -0.10 -1.30 6.20 -104.43 -0.65 -1.95 16 3 C -0.23 -2.37 10.83 -39.89 -0.43 -2.80 16 4 C -0.01 -0.11 12.08 29.63 0.36 0.25 16 5 O -0.16 -2.15 10.40 5.00 0.05 -2.10 16 6 C -0.08 -1.15 7.13 -36.80 -0.26 -1.41 16 7 C 0.59 10.57 7.79 -12.86 -0.10 10.47 16 8 O -0.53 -10.61 14.74 5.19 0.08 -10.53 16 9 N -0.71 -12.35 5.55 -61.63 -0.34 -12.69 16 10 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 11 C 0.14 2.97 5.45 -4.04 -0.02 2.95 16 12 N -0.55 -13.08 2.78 -165.66 -0.46 -13.54 16 13 C -0.26 -6.81 8.63 -15.06 -0.13 -6.94 16 14 H 0.07 1.79 6.55 -52.49 -0.34 1.45 16 15 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 16 N -0.88 -24.27 11.33 55.49 0.63 -23.64 16 17 Si 0.90 21.18 29.61 -169.99 -5.03 16.14 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.12 2.49 6.56 -67.92 -0.45 2.05 16 22 C -0.19 -3.80 9.80 -26.69 -0.26 -4.06 16 23 C -0.22 -4.41 10.36 -26.69 -0.28 -4.68 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 1.24 6.44 -51.93 -0.33 0.91 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.40 6.28 8.23 -40.82 -0.34 5.95 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.11 2.62 5.35 -51.93 -0.28 2.34 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.11 8.14 -51.92 -0.42 1.68 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -29.99 331.91 -7.46 -37.45 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.41 Total: 8.64 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.98 Total: -4.74 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.17 Total: -49.87 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.13 Total: -12.63 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.99 -7.46 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567436782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.598 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds