Wall clock time and date at job start Tue Mar 31 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40370 * 126.64433 * 2 1 4 4 C 1.35126 * 107.11287 * 179.83509 * 3 2 1 5 5 O 1.33929 * 108.76898 * 0.43350 * 4 3 2 6 6 C 1.34915 * 109.38526 * 359.71710 * 5 4 3 7 7 C 1.46659 * 125.98950 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00191 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99580 * 0.03237 * 7 6 5 10 10 C 1.46505 * 119.99458 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.46748 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.36930 * 120.00296 * 270.00251 * 12 11 10 14 14 H 1.08001 * 120.00108 * 144.92601 * 13 12 11 15 15 C 1.38808 * 120.00021 * 324.92268 * 13 12 11 16 16 N 1.31623 * 120.00136 * 337.94228 * 15 13 12 17 17 Si 1.86805 * 120.00361 * 157.93612 * 15 13 12 18 18 H 1.48501 * 109.46984 * 90.00021 * 17 15 13 19 19 H 1.48492 * 109.47377 * 210.00278 * 17 15 13 20 20 H 1.48505 * 109.46738 * 330.00306 * 17 15 13 21 21 C 1.46506 * 119.99562 * 90.00044 * 12 11 10 22 22 C 1.53005 * 117.49406 * 183.23848 * 21 12 11 23 23 C 1.53000 * 117.49853 * 114.57936 * 21 12 11 24 24 H 1.09004 * 109.47130 * 269.68669 * 1 2 3 25 25 H 1.08997 * 109.47217 * 149.69253 * 1 2 3 26 26 H 1.09003 * 109.47569 * 29.68653 * 1 2 3 27 27 H 1.07998 * 126.44082 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.61449 * 180.15272 * 4 3 2 29 29 H 0.96986 * 120.00298 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47293 * 299.99916 * 10 9 7 31 31 H 1.08997 * 109.47146 * 59.99820 * 10 9 7 32 32 H 1.08997 * 109.47819 * 299.99798 * 11 10 9 33 33 H 1.08997 * 109.47408 * 60.00024 * 11 10 9 34 34 H 0.96996 * 120.00357 * 176.06592 * 16 15 13 35 35 H 1.08998 * 115.55090 * 328.90716 * 21 12 11 36 36 H 1.08992 * 117.50145 * 0.02562 * 22 21 12 37 37 H 1.09004 * 117.49531 * 145.02187 * 22 21 12 38 38 H 1.09000 * 117.50040 * 214.97499 * 23 21 12 39 39 H 1.09007 * 117.50074 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6745 0.0037 5 8 3.6005 -0.6646 -0.0036 6 6 2.3220 -1.0955 -0.0059 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0158 9 7 2.7972 -3.4867 -0.0194 10 6 2.3599 -4.8849 -0.0270 11 6 3.5844 -5.8021 -0.0327 12 7 3.1472 -7.2004 -0.0396 13 6 2.9437 -7.8601 1.1429 14 1 2.1523 -8.5905 1.2246 15 6 3.7544 -7.5900 2.2368 16 7 4.9471 -7.0629 2.0577 17 14 3.1529 -7.9745 3.9630 18 1 3.5464 -9.3593 4.3273 19 1 3.7602 -7.0185 4.9233 20 1 1.6737 -7.8515 4.0105 21 6 2.9277 -7.8928 -1.3119 22 6 2.3989 -9.3274 -1.2533 23 6 3.8541 -9.0631 -1.6483 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3634 0.8928 -0.5090 27 1 2.0305 2.1595 -0.0004 28 1 4.5045 1.2917 0.0070 29 1 3.7436 -3.2745 -0.0183 30 1 1.7611 -5.0832 0.8620 31 1 1.7610 -5.0735 -0.9180 32 1 4.1829 -5.6038 -0.9218 33 1 4.1837 -5.6137 0.8581 34 1 5.4907 -6.8213 2.8239 35 1 2.5899 -7.2652 -2.1366 36 1 2.2140 -9.7558 -0.2683 37 1 1.7136 -9.6437 -2.0397 38 1 4.1254 -9.2057 -2.6943 39 1 4.6272 -9.3176 -0.9232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567436782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:38 Heat of formation + Delta-G solvation = 5.490740 kcal Electronic energy + Delta-G solvation = -21346.888372 eV Core-core repulsion = 18064.082215 eV Total energy + Delta-G solvation = -3282.806156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.66542 -40.51285 -38.84429 -36.49481 -35.23634 -34.80537 -32.78218 -31.45096 -29.70037 -28.29309 -26.32990 -24.21177 -23.22632 -22.87621 -22.11000 -21.60341 -20.95288 -19.24430 -18.14008 -17.48223 -17.29912 -17.06782 -16.86291 -16.26017 -16.16700 -15.59667 -15.26792 -14.59809 -14.42785 -14.30796 -14.02113 -13.88003 -13.78071 -13.51613 -13.30143 -12.95147 -12.76949 -12.61690 -12.52485 -12.16230 -11.93580 -11.70749 -11.39617 -11.26874 -10.92119 -10.66431 -10.51277 -10.22807 -9.55482 -8.59370 -7.86065 -5.49740 0.03773 1.41329 1.42630 1.45778 1.54508 1.71779 2.08914 2.23172 2.48974 3.12485 3.39171 3.52772 3.76508 3.84040 3.95909 4.28977 4.33178 4.36882 4.50573 4.54083 4.58444 4.63964 4.73824 4.76064 4.79981 4.94257 5.02372 5.10962 5.14069 5.22593 5.28596 5.38431 5.49120 5.54201 5.64256 5.73048 5.89632 6.39758 6.48814 7.01978 7.10517 7.78572 8.28056 9.06336 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004344 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.602134 B = 6444.751038 C = 7017.095535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.094 4.094 3 C -0.233 4.233 4 C 0.012 3.988 5 O -0.174 6.174 6 C -0.120 4.120 7 C 0.593 3.407 8 O -0.560 6.560 9 N -0.704 5.704 10 C 0.121 3.879 11 C 0.143 3.857 12 N -0.564 5.564 13 C -0.264 4.264 14 H 0.061 0.939 15 C -0.031 4.031 16 N -0.909 5.909 17 Si 0.948 3.052 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.097 3.903 22 C -0.183 4.183 23 C -0.212 4.212 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.187 0.813 28 H 0.257 0.743 29 H 0.411 0.589 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 15.897 -6.205 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.252 4.252 4 C -0.057 4.057 5 O -0.070 6.070 6 C -0.171 4.171 7 C 0.381 3.619 8 O -0.441 6.441 9 N -0.354 5.354 10 C -0.005 4.005 11 C 0.016 3.984 12 N -0.282 5.282 13 C -0.394 4.394 14 H 0.079 0.921 15 C -0.229 4.229 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.011 4.011 22 C -0.221 4.221 23 C -0.252 4.252 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.204 0.796 28 H 0.273 0.727 29 H 0.247 0.753 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.362 15.439 -6.078 16.760 hybrid contribution 0.285 -0.306 1.172 1.244 sum -2.077 15.133 -4.906 16.043 Atomic orbital electron populations 1.20429 0.87991 1.03640 1.02993 1.21037 0.98288 0.91696 0.98691 1.22100 0.92071 1.00671 1.10318 1.25396 1.01595 0.79538 0.99149 1.84071 1.27489 1.24487 1.70962 1.21632 0.82704 0.94105 1.18671 1.16916 0.85518 0.82887 0.76626 1.90794 1.17011 1.83236 1.53093 1.45875 1.10250 1.06230 1.73079 1.21914 0.99558 0.78916 1.00075 1.20948 0.92979 0.82317 1.02149 1.43407 1.77503 1.06712 1.00553 1.19222 1.09638 1.21488 0.89034 0.92133 1.25687 0.94129 1.01215 1.01850 1.70122 1.08336 1.46539 1.30220 0.85596 0.78160 0.77500 0.81125 1.20890 1.21540 1.20201 1.21556 1.01830 0.88003 0.89713 1.23054 0.96807 1.00068 1.02142 1.23264 0.93024 1.08400 1.00535 0.90735 0.91917 0.88753 0.79568 0.72723 0.75288 0.94315 0.92745 0.93609 0.90123 0.93786 0.87071 0.90661 0.87123 0.87847 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.21 9.82 71.23 0.70 -1.51 16 2 C -0.09 -2.39 6.20 -19.74 -0.12 -2.52 16 3 C -0.23 -4.05 10.83 22.07 0.24 -3.81 16 4 C 0.01 0.20 12.08 67.10 0.81 1.01 16 5 O -0.17 -4.34 10.40 -5.03 -0.05 -4.40 16 6 C -0.12 -3.61 7.13 24.07 0.17 -3.44 16 7 C 0.59 21.70 7.79 86.44 0.67 22.38 16 8 O -0.56 -23.55 14.74 -4.33 -0.06 -23.62 16 9 N -0.70 -25.32 5.55 -467.10 -2.59 -27.91 16 10 C 0.12 5.02 6.00 86.38 0.52 5.54 16 11 C 0.14 6.42 5.45 86.38 0.47 6.89 16 12 N -0.56 -27.39 2.78 -678.03 -1.88 -29.27 16 13 C -0.26 -14.15 8.63 84.03 0.73 -13.42 16 14 H 0.06 3.28 6.55 -2.91 -0.02 3.26 16 15 C -0.03 -1.69 4.96 84.86 0.42 -1.27 16 16 N -0.91 -51.15 11.33 21.65 0.25 -50.90 16 17 Si 0.95 44.48 29.61 68.60 2.03 46.51 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C 0.10 3.99 6.56 44.99 0.30 4.28 16 22 C -0.18 -6.89 9.80 30.62 0.30 -6.59 16 23 C -0.21 -8.24 10.36 30.62 0.32 -7.93 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.81 6.44 -2.39 -0.02 1.79 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.26 1.26 8.06 -2.91 -0.02 1.23 16 29 H 0.41 13.14 8.23 -92.72 -0.76 12.38 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 33 H 0.08 4.12 5.35 -2.39 -0.01 4.10 16 34 H 0.25 13.79 8.32 -92.71 -0.77 13.02 16 35 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.07 3.19 6.37 -2.39 -0.02 3.18 16 37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.06 2.64 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -67.46 331.91 3.50 -63.96 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.30 Total: 26.02 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.52 Total: -0.38 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.23 Total: -108.09 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.12 Total: -28.01 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.46 3.50 -63.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567436782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.450 kcal (2) G-P(sol) polarization free energy of solvation -67.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds