Wall clock time and date at job start Mon Mar 30 2020 23:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.85384 * 2 1 4 4 C 1.37963 * 120.14252 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85339 * 359.97438 * 4 3 2 6 6 C 1.47851 * 120.14212 * 179.97438 * 5 4 3 7 7 O 1.21548 * 119.99721 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99564 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 12 12 O 1.42905 * 109.47264 * 299.99925 * 10 9 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 14 14 N 1.46499 * 109.47658 * 184.99947 * 13 10 9 15 15 C 1.36939 * 120.00451 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99755 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99895 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99663 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00353 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46957 * 89.99940 * 19 17 15 21 21 H 1.48502 * 109.47127 * 209.99941 * 19 17 15 22 22 H 1.48498 * 109.46889 * 330.00053 * 19 17 15 23 23 C 1.39574 * 119.71132 * 0.25386 * 5 4 3 24 24 C 1.37955 * 119.85528 * 359.51401 * 23 5 4 25 25 H 1.09000 * 109.47151 * 89.99782 * 1 2 3 26 26 H 1.09000 * 109.47255 * 209.99573 * 1 2 3 27 27 H 1.08999 * 109.46771 * 329.99367 * 1 2 3 28 28 H 1.07994 * 119.92817 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.07196 * 179.97438 * 4 3 2 30 30 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 32 32 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 33 33 H 0.96696 * 114.00036 * 299.99911 * 12 10 9 34 34 H 1.09001 * 109.47563 * 305.00337 * 13 10 9 35 35 H 1.09004 * 109.47313 * 64.99993 * 13 10 9 36 36 H 0.97002 * 119.99938 * 0.02562 * 14 13 10 37 37 H 0.97000 * 119.99838 * 179.97438 * 18 17 15 38 38 H 1.08003 * 120.07559 * 179.72120 * 23 5 4 39 39 H 1.08000 * 119.93065 * 180.23180 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2762 -0.0001 0.0016 6 6 5.7547 -0.0001 0.0016 7 8 6.3624 1.0525 0.0012 8 7 6.4285 -1.1673 0.0021 9 6 7.8935 -1.1674 0.0027 10 6 8.4035 -2.6098 0.0039 11 1 8.0405 -3.1243 -0.8858 12 8 7.9268 -3.2827 1.1710 13 6 9.9335 -2.6099 0.0038 14 7 10.4218 -3.9859 -0.1154 15 6 11.7682 -4.2353 -0.1365 16 1 12.4700 -3.4176 -0.0648 17 6 12.2308 -5.5392 -0.2490 18 7 13.5249 -5.7789 -0.2698 19 14 11.0169 -6.9537 -0.3722 20 1 10.6963 -7.2078 -1.7998 21 1 11.6163 -8.1739 0.2253 22 1 9.7732 -6.6037 0.3597 23 6 3.5753 -1.2071 -0.0032 24 6 2.1957 -1.2001 0.0011 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6522 2.1331 -0.0004 29 1 4.1118 2.1442 0.0001 30 1 5.9436 -2.0074 0.0029 31 1 8.2572 -0.6538 -0.8873 32 1 8.2566 -0.6533 0.8927 33 1 8.2118 -2.8787 2.0019 34 1 10.2969 -2.0211 -0.8384 35 1 10.2969 -2.1748 0.9349 36 1 9.7915 -4.7205 -0.1794 37 1 13.8482 -6.6900 -0.3480 38 1 4.1117 -2.1445 -0.0070 39 1 1.6521 -2.1333 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568589277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:12 Heat of formation + Delta-G solvation = -55.228203 kcal Electronic energy + Delta-G solvation = -20473.308075 eV Core-core repulsion = 17187.868948 eV Total energy + Delta-G solvation = -3285.439127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44698 -38.88203 -37.70220 -34.60903 -34.18701 -33.20700 -31.54636 -31.29058 -29.62930 -27.76799 -25.53273 -23.02226 -22.90604 -21.98940 -21.51702 -20.37568 -18.37498 -17.73849 -16.57809 -16.15337 -15.97526 -15.57015 -15.10595 -14.92054 -14.75337 -14.46585 -14.11997 -13.93165 -13.74570 -13.49979 -13.21306 -12.82045 -12.66115 -12.43124 -12.25097 -11.98651 -11.97000 -11.37786 -11.32493 -10.88427 -10.83252 -10.23840 -10.15866 -9.77238 -9.57477 -9.35630 -9.28921 -8.99461 -8.93888 -7.27613 -5.78995 -3.15461 0.52576 1.02002 2.64259 2.97884 3.38222 3.43705 3.45634 3.56804 4.34091 4.38403 4.49544 4.54417 4.58673 4.66589 4.69927 4.88491 4.99668 5.10260 5.15008 5.27085 5.33882 5.44082 5.49886 5.58897 5.65126 5.67765 5.74941 5.84097 5.93770 6.03873 6.15415 6.25883 6.40293 6.52565 6.53582 7.35237 7.74373 7.96494 8.05967 8.39423 9.18612 9.90547 10.10026 11.39004 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.002903 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.738177 B = 9641.683498 C =10333.279322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.056 4.056 5 C -0.139 4.139 6 C 0.556 3.444 7 O -0.540 6.540 8 N -0.717 5.717 9 C 0.090 3.910 10 C 0.084 3.916 11 H 0.105 0.895 12 O -0.557 6.557 13 C 0.131 3.869 14 N -0.750 5.750 15 C -0.248 4.248 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.273 1.273 23 C -0.081 4.081 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.404 0.596 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.376 0.624 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.365 0.635 37 H 0.260 0.740 38 H 0.128 0.872 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.447 11.767 1.038 29.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.142 4.142 6 C 0.343 3.657 7 O -0.419 6.419 8 N -0.369 5.369 9 C -0.035 4.035 10 C 0.025 3.975 11 H 0.123 0.877 12 O -0.362 6.362 13 C 0.003 3.997 14 N -0.396 5.396 15 C -0.378 4.378 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.199 1.199 23 C -0.099 4.099 24 C -0.147 4.147 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.240 0.760 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.199 0.801 37 H 0.070 0.930 38 H 0.146 0.854 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.993 12.153 0.596 29.609 hybrid contribution -0.564 -1.153 0.269 1.312 sum -27.557 10.999 0.866 29.684 Atomic orbital electron populations 1.20871 0.90854 1.03145 1.02688 1.20175 0.96402 0.93193 0.96617 1.21043 0.93839 0.97869 1.02120 1.21286 0.93842 0.97808 0.94584 1.19962 0.92855 0.94529 1.06849 1.18292 0.87122 0.83844 0.76452 1.90774 1.69896 1.31190 1.50024 1.45828 1.07573 1.08627 1.74875 1.22107 0.79334 0.98404 1.03621 1.22460 0.95295 0.90256 0.89525 0.87748 1.86542 1.76443 1.57317 1.15928 1.21174 0.89953 0.88872 0.99695 1.42576 1.04800 1.01796 1.90411 1.19043 0.81649 0.94015 1.43084 0.89238 1.24681 0.95610 0.97017 1.01762 1.69711 1.11497 1.19849 1.57001 0.86531 0.81182 0.82939 0.77894 1.21097 1.21725 1.19863 1.21358 0.94585 0.97150 0.96840 1.21007 0.93859 0.97910 1.01914 0.90735 0.91206 0.91236 0.85354 0.84596 0.75994 0.90055 0.90699 0.77610 0.94385 0.94988 0.80116 0.93003 0.85381 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.06 -0.46 5.89 -104.53 -0.62 -1.08 16 3 C -0.13 -1.04 9.68 -39.64 -0.38 -1.42 16 4 C -0.06 -0.56 9.60 -39.18 -0.38 -0.94 16 5 C -0.14 -1.50 5.87 -104.97 -0.62 -2.12 16 6 C 0.56 7.26 7.77 -12.33 -0.10 7.16 16 7 O -0.54 -8.89 16.35 5.32 0.09 -8.80 16 8 N -0.72 -8.23 5.40 -61.25 -0.33 -8.56 16 9 C 0.09 1.12 5.34 -4.04 -0.02 1.10 16 10 C 0.08 1.19 3.08 -26.74 -0.08 1.10 16 11 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 12 O -0.56 -7.90 13.03 -35.23 -0.46 -8.36 16 13 C 0.13 2.39 5.90 -4.05 -0.02 2.37 16 14 N -0.75 -17.67 5.35 -59.91 -0.32 -17.99 16 15 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 19 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 22 H -0.27 -6.53 6.52 56.52 0.37 -6.17 16 23 C -0.08 -0.70 9.54 -39.19 -0.37 -1.08 16 24 C -0.13 -0.98 9.68 -39.64 -0.38 -1.36 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.14 1.37 7.65 -52.49 -0.40 0.97 16 30 H 0.40 3.94 6.38 -40.82 -0.26 3.68 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.38 4.39 9.05 45.56 0.41 4.80 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 8.56 5.53 -40.82 -0.23 8.33 16 37 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 38 H 0.13 0.91 6.41 -52.48 -0.34 0.57 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -34.95 333.41 -7.43 -42.38 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.62 Total: 11.07 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.87 Total: -3.61 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.12 Total: -55.22 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.37 Total: -17.16 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.95 -7.43 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568589277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.850 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds