Wall clock time and date at job start Mon Mar 30 2020 23:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.85269 * 2 1 4 4 C 1.37949 * 120.14121 * 180.02562 * 3 2 1 5 5 C 1.39578 * 119.85647 * 359.97299 * 4 3 2 6 6 C 1.47850 * 120.14408 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00185 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99831 * 179.72562 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27510 * 8 6 5 10 10 C 1.52997 * 109.47551 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.46907 * 305.00459 * 10 9 8 12 12 O 1.42899 * 109.47165 * 64.99775 * 10 9 8 13 13 C 1.52989 * 109.47435 * 185.00577 * 10 9 8 14 14 N 1.46500 * 109.47503 * 179.97438 * 13 10 9 15 15 C 1.36937 * 120.00241 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00088 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00000 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00213 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46800 * 90.00026 * 19 17 15 21 21 H 1.48498 * 109.47416 * 210.00458 * 19 17 15 22 22 H 1.48502 * 109.46891 * 330.00306 * 19 17 15 23 23 C 1.39575 * 119.71084 * 0.28197 * 5 4 3 24 24 C 1.37958 * 119.85156 * 359.44349 * 23 5 4 25 25 H 1.08998 * 109.47098 * 90.00119 * 1 2 3 26 26 H 1.08997 * 109.47001 * 209.99878 * 1 2 3 27 27 H 1.09002 * 109.46986 * 329.99724 * 1 2 3 28 28 H 1.08001 * 119.92834 * 0.02562 * 3 2 1 29 29 H 1.08007 * 120.07392 * 179.97438 * 4 3 2 30 30 H 0.97001 * 119.99727 * 0.28406 * 8 6 5 31 31 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 32 32 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 33 33 H 0.96700 * 113.99610 * 60.00555 * 12 10 9 34 34 H 1.09006 * 109.46977 * 299.99839 * 13 10 9 35 35 H 1.09002 * 109.47666 * 59.99555 * 13 10 9 36 36 H 0.97005 * 119.99460 * 359.97438 * 14 13 10 37 37 H 0.96998 * 120.00208 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.07255 * 179.71866 * 23 5 4 39 39 H 1.07998 * 119.92974 * 180.25357 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 0.0000 -0.0005 7 8 6.3625 1.0526 -0.0001 8 7 6.4285 -1.1672 0.0051 9 6 7.8935 -1.1673 0.0112 10 6 8.4035 -2.6097 0.0162 11 1 7.9653 -3.1471 0.8572 12 8 8.0306 -3.2510 -1.2051 13 6 9.9277 -2.6113 0.1484 14 7 10.4161 -3.9925 0.1537 15 6 11.7577 -4.2440 0.2629 16 1 12.4558 -3.4242 0.3454 17 6 12.2203 -5.5528 0.2685 18 7 11.3694 -6.5520 0.1684 19 14 14.0504 -5.8959 0.4181 20 1 14.4144 -6.0236 1.8521 21 1 14.3766 -7.1599 -0.2899 22 1 14.8151 -4.7770 -0.1890 23 6 3.5753 -1.2070 -0.0059 24 6 2.1957 -1.2000 0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6522 2.1333 0.0004 29 1 4.1117 2.1443 -0.0010 30 1 5.9435 -2.0072 0.0050 31 1 8.2606 -0.6555 -0.8784 32 1 8.2531 -0.6513 0.9015 33 1 8.3861 -2.8254 -1.9973 34 1 10.3659 -2.0739 -0.6927 35 1 10.2122 -2.1222 1.0800 36 1 9.7889 -4.7289 0.0800 37 1 11.6927 -7.4665 0.1719 38 1 4.1117 -2.1444 -0.0105 39 1 1.6521 -2.1332 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568589278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:15 Heat of formation + Delta-G solvation = -59.058793 kcal Electronic energy + Delta-G solvation = -20392.777292 eV Core-core repulsion = 17107.172058 eV Total energy + Delta-G solvation = -3285.605234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38501 -38.80668 -37.55195 -34.50218 -34.02056 -33.15325 -31.41063 -31.17239 -29.30514 -27.61940 -25.32516 -23.05126 -22.97036 -22.11174 -21.42115 -20.29204 -18.29429 -17.16743 -16.54639 -16.06186 -15.87054 -15.52008 -15.06152 -14.82083 -14.61894 -14.47109 -14.07027 -13.87710 -13.72449 -13.38331 -12.98724 -12.76164 -12.62050 -12.38788 -12.16836 -11.92217 -11.84543 -11.32645 -10.96647 -10.82966 -10.63636 -10.19381 -10.12817 -9.81996 -9.51281 -9.30594 -9.22445 -8.94267 -8.90380 -6.95097 -5.77174 -3.06960 0.57702 1.07038 2.69768 3.05697 3.43157 3.48166 3.50010 3.62092 4.39630 4.43583 4.52946 4.59141 4.68444 4.74427 4.85420 4.94129 5.04997 5.19066 5.23431 5.32098 5.38394 5.54590 5.59518 5.64513 5.69894 5.77702 5.93346 5.99136 6.09004 6.18143 6.20164 6.35320 6.49714 6.58477 6.65976 7.42210 7.67570 7.92474 8.12281 8.41034 9.52701 10.09137 10.45100 11.45161 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043116 B = 0.002631 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.255092 B =10639.637424 C =11154.052561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.057 4.057 5 C -0.139 4.139 6 C 0.555 3.445 7 O -0.542 6.542 8 N -0.716 5.716 9 C 0.090 3.910 10 C 0.089 3.911 11 H 0.104 0.896 12 O -0.552 6.552 13 C 0.127 3.873 14 N -0.726 5.726 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.080 4.080 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.404 0.596 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.374 0.626 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.218 13.319 -0.901 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.149 4.149 4 C -0.076 4.076 5 C -0.142 4.142 6 C 0.343 3.657 7 O -0.421 6.421 8 N -0.368 5.368 9 C -0.035 4.035 10 C 0.029 3.971 11 H 0.122 0.878 12 O -0.357 6.357 13 C -0.002 4.002 14 N -0.371 5.371 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.099 4.099 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.221 0.779 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.224 0.776 37 H 0.065 0.935 38 H 0.147 0.853 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.879 13.669 -0.480 25.802 hybrid contribution 0.985 -0.533 -0.263 1.150 sum -20.894 13.136 -0.743 24.691 Atomic orbital electron populations 1.20868 0.90876 1.03120 1.02670 1.20171 0.96384 0.93199 0.96680 1.21035 0.93836 0.97846 1.02196 1.21276 0.93833 0.97793 0.94658 1.19971 0.92884 0.94527 1.06789 1.18298 0.87115 0.83872 0.76458 1.90767 1.69914 1.31224 1.50182 1.45857 1.07639 1.08588 1.74696 1.22146 0.79247 0.98742 1.03335 1.22390 0.96198 0.90233 0.88292 0.87791 1.86569 1.76280 1.57428 1.15454 1.21192 0.90267 0.89855 0.98903 1.42232 1.05526 1.00652 1.88664 1.19220 0.83738 0.91848 1.42668 0.91197 1.24769 0.97773 0.95572 1.02792 1.69680 1.32820 0.98250 1.57082 0.86172 0.84954 0.77366 0.77571 1.21677 1.21723 1.20745 1.21373 0.94592 0.97193 0.96733 1.21010 0.93864 0.97909 1.01872 0.90751 0.91205 0.91271 0.85397 0.84640 0.75995 0.90882 0.90253 0.77869 0.95885 0.95333 0.77644 0.93468 0.85307 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.06 -0.49 5.89 -104.53 -0.62 -1.11 16 3 C -0.13 -1.09 9.68 -39.64 -0.38 -1.47 16 4 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 5 C -0.14 -1.57 5.87 -104.97 -0.62 -2.19 16 6 C 0.56 7.59 7.77 -12.33 -0.10 7.49 16 7 O -0.54 -9.20 16.35 5.32 0.09 -9.11 16 8 N -0.72 -8.79 5.45 -61.25 -0.33 -9.12 16 9 C 0.09 1.20 5.31 -4.04 -0.02 1.17 16 10 C 0.09 1.36 3.08 -26.74 -0.08 1.28 16 11 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 12 O -0.55 -8.73 13.03 -35.23 -0.46 -9.19 16 13 C 0.13 2.45 5.92 -4.05 -0.02 2.42 16 14 N -0.73 -18.36 5.49 -59.91 -0.33 -18.69 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 19 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.08 -0.74 9.54 -39.19 -0.37 -1.12 16 24 C -0.13 -1.03 9.68 -39.64 -0.38 -1.42 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.14 1.42 7.65 -52.48 -0.40 1.02 16 30 H 0.40 4.28 6.51 -40.82 -0.27 4.01 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.37 4.98 9.05 45.56 0.41 5.39 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.39 10.53 7.54 -40.82 -0.31 10.22 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -34.11 336.53 -7.79 -41.90 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -4.67 Total: 12.94 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.86 Total: -3.62 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.06 Total: -55.47 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.37 Total: -18.30 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.11 -7.79 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568589278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.155 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds