Wall clock time and date at job start Mon Mar 30 2020 23:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.85269 * 2 1 4 4 C 1.37949 * 120.14121 * 180.02562 * 3 2 1 5 5 C 1.39578 * 119.85647 * 359.97299 * 4 3 2 6 6 C 1.47850 * 120.14408 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00185 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99831 * 179.72562 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27510 * 8 6 5 10 10 C 1.52997 * 109.47551 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.46907 * 305.00459 * 10 9 8 12 12 O 1.42899 * 109.47165 * 64.99775 * 10 9 8 13 13 C 1.52989 * 109.47435 * 185.00577 * 10 9 8 14 14 N 1.46500 * 109.47503 * 179.97438 * 13 10 9 15 15 C 1.36937 * 120.00241 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00088 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00000 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00213 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46800 * 90.00026 * 19 17 15 21 21 H 1.48498 * 109.47416 * 210.00458 * 19 17 15 22 22 H 1.48502 * 109.46891 * 330.00306 * 19 17 15 23 23 C 1.39575 * 119.71084 * 0.28197 * 5 4 3 24 24 C 1.37958 * 119.85156 * 359.44349 * 23 5 4 25 25 H 1.08998 * 109.47098 * 90.00119 * 1 2 3 26 26 H 1.08997 * 109.47001 * 209.99878 * 1 2 3 27 27 H 1.09002 * 109.46986 * 329.99724 * 1 2 3 28 28 H 1.08001 * 119.92834 * 0.02562 * 3 2 1 29 29 H 1.08007 * 120.07392 * 179.97438 * 4 3 2 30 30 H 0.97001 * 119.99727 * 0.28406 * 8 6 5 31 31 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 32 32 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 33 33 H 0.96700 * 113.99610 * 60.00555 * 12 10 9 34 34 H 1.09006 * 109.46977 * 299.99839 * 13 10 9 35 35 H 1.09002 * 109.47666 * 59.99555 * 13 10 9 36 36 H 0.97005 * 119.99460 * 359.97438 * 14 13 10 37 37 H 0.96998 * 120.00208 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.07255 * 179.71866 * 23 5 4 39 39 H 1.07998 * 119.92974 * 180.25357 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 0.0000 -0.0005 7 8 6.3625 1.0526 -0.0001 8 7 6.4285 -1.1672 0.0051 9 6 7.8935 -1.1673 0.0112 10 6 8.4035 -2.6097 0.0162 11 1 7.9653 -3.1471 0.8572 12 8 8.0306 -3.2510 -1.2051 13 6 9.9277 -2.6113 0.1484 14 7 10.4161 -3.9925 0.1537 15 6 11.7577 -4.2440 0.2629 16 1 12.4558 -3.4242 0.3454 17 6 12.2203 -5.5528 0.2685 18 7 11.3694 -6.5520 0.1684 19 14 14.0504 -5.8959 0.4181 20 1 14.4144 -6.0236 1.8521 21 1 14.3766 -7.1599 -0.2899 22 1 14.8151 -4.7770 -0.1890 23 6 3.5753 -1.2070 -0.0059 24 6 2.1957 -1.2000 0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6522 2.1333 0.0004 29 1 4.1117 2.1443 -0.0010 30 1 5.9435 -2.0072 0.0050 31 1 8.2606 -0.6555 -0.8784 32 1 8.2531 -0.6513 0.9015 33 1 8.3861 -2.8254 -1.9973 34 1 10.3659 -2.0739 -0.6927 35 1 10.2122 -2.1222 1.0800 36 1 9.7889 -4.7289 0.0800 37 1 11.6927 -7.4665 0.1719 38 1 4.1117 -2.1444 -0.0105 39 1 1.6521 -2.1332 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568589278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:14 Heat of formation + Delta-G solvation = -84.901964 kcal Electronic energy + Delta-G solvation = -20393.897936 eV Core-core repulsion = 17107.172058 eV Total energy + Delta-G solvation = -3286.725878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31096 -39.69280 -38.82767 -36.10409 -35.44038 -33.83635 -33.18069 -31.97357 -30.67910 -28.47166 -26.85125 -24.61708 -23.65935 -23.13042 -22.78213 -21.23906 -19.40069 -19.03953 -17.76914 -17.26083 -16.92727 -16.45566 -16.21479 -15.96215 -15.85498 -15.63749 -15.30698 -14.89131 -14.61170 -14.56050 -14.23787 -14.14256 -13.88515 -13.31556 -13.01610 -12.96390 -12.81702 -12.75574 -12.56454 -12.17140 -11.99734 -11.93707 -11.81889 -11.28643 -10.99706 -10.87508 -10.27859 -9.97713 -9.65322 -9.02096 -7.95617 -5.25263 -0.17929 0.40051 1.47435 1.49221 1.57696 1.78907 2.02726 2.55604 2.85033 3.35072 3.43932 3.55096 3.66530 3.84111 3.99078 3.99672 4.03931 4.18431 4.35521 4.40530 4.43875 4.59034 4.67408 4.76344 4.81229 4.87420 4.92043 5.07310 5.17999 5.23586 5.26517 5.34201 5.38624 5.47593 5.59324 5.94514 6.25573 6.43095 6.76830 7.09689 7.32811 8.07762 8.31369 9.27584 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043116 B = 0.002631 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.255092 B =10639.637424 C =11154.052561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.133 4.133 4 C -0.072 4.072 5 C -0.163 4.163 6 C 0.554 3.446 7 O -0.584 6.584 8 N -0.707 5.707 9 C 0.101 3.899 10 C 0.109 3.891 11 H 0.103 0.897 12 O -0.562 6.562 13 C 0.122 3.878 14 N -0.739 5.739 15 C -0.249 4.249 16 H 0.076 0.924 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.269 1.269 23 C -0.082 4.082 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.413 0.587 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.385 0.615 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.624 13.692 -0.939 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.166 4.166 6 C 0.343 3.657 7 O -0.465 6.465 8 N -0.359 5.359 9 C -0.024 4.024 10 C 0.049 3.951 11 H 0.121 0.879 12 O -0.369 6.369 13 C -0.006 4.006 14 N -0.383 5.383 15 C -0.380 4.380 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.804 3.196 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.194 1.194 23 C -0.101 4.101 24 C -0.150 4.150 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.168 0.832 29 H 0.143 0.857 30 H 0.251 0.749 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.159 0.841 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.297 14.070 -0.523 27.221 hybrid contribution 1.310 -0.583 -0.263 1.458 sum -21.986 13.488 -0.786 25.806 Atomic orbital electron populations 1.20942 0.88645 1.04241 1.03617 1.20576 0.98025 0.92742 0.94731 1.21298 0.92973 0.99318 1.01517 1.21351 0.94953 0.97222 0.95563 1.19888 0.91432 0.95835 1.09459 1.18702 0.88199 0.83338 0.75453 1.90736 1.70915 1.32552 1.52338 1.45740 1.07118 1.08879 1.74156 1.21909 0.79991 0.97084 1.03372 1.22089 0.93455 0.91301 0.88281 0.87933 1.86549 1.76283 1.58029 1.16016 1.21394 0.93031 0.86945 0.99184 1.42406 1.04578 1.02626 1.88666 1.19642 0.85212 0.92099 1.41091 0.90587 1.25610 1.02123 0.95557 1.03543 1.69836 1.34696 0.98337 1.58948 0.85116 0.79942 0.77105 0.77426 1.21335 1.22140 1.19421 1.21544 0.95391 0.96825 0.96317 1.21354 0.93422 0.99207 1.01043 0.89713 0.90104 0.90230 0.83225 0.85683 0.74889 0.90744 0.90430 0.76594 0.95097 0.94819 0.79018 0.93958 0.84124 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 71.24 0.71 -0.09 16 2 C -0.06 -0.78 5.89 -19.80 -0.12 -0.90 16 3 C -0.13 -2.01 9.68 22.23 0.22 -1.79 16 4 C -0.07 -1.49 9.60 22.52 0.22 -1.28 16 5 C -0.16 -3.66 5.87 -20.09 -0.12 -3.78 16 6 C 0.55 15.24 7.77 86.79 0.67 15.92 16 7 O -0.58 -20.31 16.35 -3.88 -0.06 -20.37 16 8 N -0.71 -16.98 5.45 -465.97 -2.54 -19.52 16 9 C 0.10 2.63 5.31 86.38 0.46 3.09 16 10 C 0.11 3.24 3.08 30.59 0.09 3.33 16 11 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 12 O -0.56 -17.26 13.03 -148.98 -1.94 -19.20 16 13 C 0.12 4.63 5.92 86.38 0.51 5.14 16 14 N -0.74 -37.38 5.49 -343.46 -1.89 -39.26 16 15 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 18 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 19 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.08 -1.42 9.54 22.53 0.21 -1.20 16 24 C -0.13 -1.82 9.68 22.23 0.22 -1.60 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 26 H 0.08 0.40 8.08 -2.39 -0.02 0.39 16 27 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 28 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 29 H 0.13 2.75 7.65 -2.91 -0.02 2.73 16 30 H 0.41 8.34 6.51 -92.71 -0.60 7.73 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.39 9.86 9.05 -74.06 -0.67 9.19 16 34 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.38 20.60 7.54 -92.70 -0.70 19.90 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 38 H 0.14 1.96 6.41 -2.91 -0.02 1.94 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -73.10 336.53 -0.63 -73.72 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.89 Total: 35.92 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 4.39 Total: -0.15 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -4.15 Total: -118.19 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.00 Total: -39.57 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -73.10 -0.63 -73.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568589278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.180 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds