Wall clock time and date at job start Tue Mar 31 2020 00:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 125.43938 * 2 1 4 4 C 1.47022 * 105.95649 * 179.97438 * 3 2 1 5 5 C 1.47368 * 127.19440 * 179.97438 * 4 3 2 6 6 O 1.21616 * 120.00111 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00254 * 0.02916 * 5 4 3 8 8 C 1.46506 * 120.00390 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46949 * 174.94667 * 8 7 5 10 10 N 1.46492 * 115.54845 * 80.39600 * 9 8 7 11 11 C 1.36939 * 120.00499 * 65.27579 * 10 9 8 12 12 H 1.07996 * 119.99575 * 354.96554 * 11 10 9 13 13 C 1.38810 * 120.00560 * 174.96414 * 11 10 9 14 14 N 1.31616 * 119.99546 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00291 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47107 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46644 * 299.99823 * 15 13 11 18 18 H 1.48501 * 109.47175 * 59.99686 * 15 13 11 19 19 C 1.52995 * 117.49615 * 226.06313 * 9 8 7 20 20 C 1.52996 * 117.49682 * 294.71967 * 9 8 7 21 21 C 1.36424 * 105.61073 * 0.26512 * 4 3 2 22 22 C 1.50699 * 125.79579 * 179.73698 * 21 4 3 23 23 O 1.33657 * 108.39858 * 359.57297 * 21 4 3 24 24 H 1.09007 * 109.47194 * 89.99667 * 1 2 3 25 25 H 1.08995 * 109.47225 * 209.99867 * 1 2 3 26 26 H 1.09004 * 109.47129 * 330.00229 * 1 2 3 27 27 H 1.08001 * 127.02206 * 359.97438 * 3 2 1 28 28 H 0.97006 * 119.99925 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.46746 * 54.94773 * 8 7 5 30 30 H 1.08994 * 109.47061 * 294.94862 * 8 7 5 31 31 H 0.97000 * 120.00014 * 245.27291 * 10 9 8 32 32 H 0.97009 * 120.00254 * 179.97438 * 14 13 11 33 33 H 1.08997 * 117.50148 * 215.00899 * 19 9 8 34 34 H 1.09010 * 117.49961 * 0.02562 * 19 9 8 35 35 H 1.08994 * 117.50449 * 359.97438 * 20 9 8 36 36 H 1.09009 * 117.49494 * 144.98169 * 20 9 8 37 37 H 1.09001 * 109.47439 * 90.00200 * 22 21 4 38 38 H 1.09001 * 109.46524 * 209.99484 * 22 21 4 39 39 H 1.08998 * 109.47235 * 329.99687 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4124 0.0003 6 8 5.9891 0.8664 0.0005 7 7 4.8244 2.7579 0.0000 8 6 6.0485 3.5627 0.0003 9 6 5.6853 5.0435 -0.1273 10 7 5.2578 5.6981 1.1116 11 6 6.1409 5.8468 2.1475 12 1 7.1267 5.4104 2.0835 13 6 5.7692 6.5583 3.2799 14 7 4.5680 7.0906 3.3577 15 14 6.9742 6.7617 4.6928 16 1 6.3388 7.5557 5.7748 17 1 7.3521 5.4247 5.2172 18 1 8.1893 7.4655 4.2096 19 6 6.4788 5.8815 -1.1316 20 6 5.0271 5.4996 -1.4309 21 6 3.5789 -0.7583 -0.0051 22 6 4.7389 -1.7203 -0.0125 23 8 2.2851 -1.0936 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9595 2.1229 -0.0004 28 1 3.9576 3.1934 -0.0004 29 1 6.6766 3.2689 -0.8407 30 1 6.5899 3.4003 0.9323 31 1 4.3492 6.0264 1.1981 32 1 4.3079 7.5875 4.1492 33 1 6.6829 6.9199 -0.8707 34 1 7.2595 5.3778 -1.7019 35 1 4.8532 4.7450 -2.1979 36 1 4.2757 6.2867 -1.3668 37 1 5.0214 -1.9568 1.0134 38 1 4.4490 -2.6350 -0.5295 39 1 5.5853 -1.2649 -0.5266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569389360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:53 Heat of formation + Delta-G solvation = 6.588087 kcal Electronic energy + Delta-G solvation = -21312.550853 eV Core-core repulsion = 18029.792282 eV Total energy + Delta-G solvation = -3282.758572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.59803 -39.16494 -37.42828 -33.86359 -33.13451 -32.92486 -32.85820 -29.72320 -29.58838 -26.88049 -24.95612 -23.90322 -22.85186 -21.85119 -20.79228 -19.68649 -18.72487 -17.16905 -17.05894 -16.51676 -15.80748 -15.51311 -15.17703 -14.46294 -14.32509 -13.96073 -13.64037 -13.58064 -13.45363 -13.08363 -12.93606 -12.89279 -12.72580 -12.47543 -12.12654 -11.90544 -11.59495 -10.99622 -10.95010 -10.86153 -10.30912 -10.27920 -9.76615 -9.73540 -9.68825 -9.30897 -8.86154 -8.63151 -8.34377 -7.07169 -5.83506 -3.14017 1.42194 2.01580 2.67136 3.42596 3.46914 3.47991 3.53202 3.63572 4.39712 4.45026 4.61043 4.77984 4.94300 5.09612 5.23386 5.24771 5.26687 5.31011 5.39499 5.47621 5.49022 5.56307 5.64604 5.70594 5.82436 5.90093 6.10570 6.14061 6.24706 6.33803 6.43795 6.57726 6.66824 6.78448 6.88786 7.04462 7.69127 7.93604 8.34657 8.57442 9.45892 9.99133 10.34504 11.38419 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.004305 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.838795 B = 6502.135257 C = 6732.725001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.182 4.182 4 C -0.234 4.234 5 C 0.585 3.415 6 O -0.553 6.553 7 N -0.702 5.702 8 C 0.148 3.852 9 C 0.127 3.873 10 N -0.689 5.689 11 C -0.239 4.239 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.932 5.932 15 Si 0.908 3.092 16 H -0.291 1.291 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.186 4.186 20 C -0.186 4.186 21 C 0.069 3.931 22 C -0.079 4.079 23 O -0.178 6.178 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.401 0.599 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -13.652 -9.866 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.239 4.239 5 C 0.372 3.628 6 O -0.434 6.434 7 N -0.351 5.351 8 C 0.023 3.977 9 C 0.033 3.967 10 N -0.328 5.328 11 C -0.369 4.369 12 H 0.090 0.910 13 C -0.205 4.205 14 N -0.580 5.580 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.227 4.227 20 C -0.223 4.223 21 C 0.016 3.984 22 C -0.135 4.135 23 O -0.075 6.075 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.175 0.825 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.222 0.778 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.035 -14.248 -9.692 18.258 hybrid contribution -0.126 0.871 0.937 1.285 sum -6.161 -13.377 -8.755 17.134 Atomic orbital electron populations 1.20318 0.84789 1.04216 1.03505 1.22191 0.93918 0.83720 1.06899 1.22648 0.90867 0.99619 1.06962 1.21225 0.94013 0.93288 1.15357 1.17175 0.87169 0.82063 0.76376 1.90718 1.28777 1.72032 1.51898 1.45703 1.10667 1.05158 1.73558 1.21266 0.85618 0.88845 1.01976 1.20168 1.01879 0.90149 0.84523 1.41767 1.12735 1.68304 1.10020 1.19128 0.95760 1.27631 0.94424 0.91001 1.24746 0.96933 1.00159 0.98662 1.69649 1.18651 1.40158 1.29548 0.86254 0.80241 0.77695 0.81942 1.21679 1.21149 1.21111 1.23365 0.93173 1.01944 1.04173 1.23077 0.96905 1.03472 0.98894 1.22736 0.82787 0.94096 0.98792 1.20579 0.92195 0.96399 1.04331 1.83671 1.16219 1.35638 1.71961 0.90123 0.90595 0.89077 0.82520 0.76483 0.92021 0.90575 0.77767 0.93380 0.88579 0.89917 0.89489 0.89003 0.89479 0.90745 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.40 36.01 0.37 -0.16 16 2 C -0.02 -0.22 7.28 -35.74 -0.26 -0.48 16 3 C -0.18 -2.36 10.48 -37.46 -0.39 -2.76 16 4 C -0.23 -3.59 6.31 -103.28 -0.65 -4.25 16 5 C 0.58 10.31 7.81 -12.55 -0.10 10.21 16 6 O -0.55 -10.93 14.84 5.26 0.08 -10.85 16 7 N -0.70 -12.03 5.51 -61.40 -0.34 -12.37 16 8 C 0.15 2.78 5.73 -4.04 -0.02 2.75 16 9 C 0.13 2.45 2.15 -131.83 -0.28 2.17 16 10 N -0.69 -16.54 5.49 -47.24 -0.26 -16.80 16 11 C -0.24 -6.46 9.56 -15.06 -0.14 -6.60 16 12 H 0.07 1.92 7.76 -52.49 -0.41 1.52 16 13 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 14 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 15 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.19 -3.25 10.11 -26.70 -0.27 -3.52 16 20 C -0.19 -2.99 10.14 -26.70 -0.27 -3.26 16 21 C 0.07 0.95 7.37 -34.96 -0.26 0.69 16 22 C -0.08 -0.89 9.89 36.01 0.36 -0.54 16 23 O -0.18 -2.32 10.52 7.64 0.08 -2.24 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.16 1.77 7.74 -52.49 -0.41 1.36 16 28 H 0.40 6.35 7.65 -40.82 -0.31 6.03 16 29 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 30 H 0.08 1.64 7.73 -51.93 -0.40 1.24 16 31 H 0.39 9.85 8.04 -40.82 -0.33 9.52 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 34 H 0.08 1.28 8.08 -51.92 -0.42 0.86 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.38 6.49 -51.93 -0.34 1.04 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -31.79 337.92 -7.20 -38.99 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.54 Total: 13.70 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.02 Total: -6.09 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.13 Total: -55.90 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.16 Total: -13.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.79 -7.20 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569389360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.577 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds