Wall clock time and date at job start Tue Mar 31 2020 00:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 125.43938 * 2 1 4 4 C 1.47022 * 105.95649 * 179.97438 * 3 2 1 5 5 C 1.47368 * 127.19440 * 179.97438 * 4 3 2 6 6 O 1.21616 * 120.00111 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00254 * 0.02916 * 5 4 3 8 8 C 1.46506 * 120.00390 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46949 * 174.94667 * 8 7 5 10 10 N 1.46492 * 115.54845 * 80.39600 * 9 8 7 11 11 C 1.36939 * 120.00499 * 65.27579 * 10 9 8 12 12 H 1.07996 * 119.99575 * 354.96554 * 11 10 9 13 13 C 1.38810 * 120.00560 * 174.96414 * 11 10 9 14 14 N 1.31616 * 119.99546 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00291 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47107 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46644 * 299.99823 * 15 13 11 18 18 H 1.48501 * 109.47175 * 59.99686 * 15 13 11 19 19 C 1.52995 * 117.49615 * 226.06313 * 9 8 7 20 20 C 1.52996 * 117.49682 * 294.71967 * 9 8 7 21 21 C 1.36424 * 105.61073 * 0.26512 * 4 3 2 22 22 C 1.50699 * 125.79579 * 179.73698 * 21 4 3 23 23 O 1.33657 * 108.39858 * 359.57297 * 21 4 3 24 24 H 1.09007 * 109.47194 * 89.99667 * 1 2 3 25 25 H 1.08995 * 109.47225 * 209.99867 * 1 2 3 26 26 H 1.09004 * 109.47129 * 330.00229 * 1 2 3 27 27 H 1.08001 * 127.02206 * 359.97438 * 3 2 1 28 28 H 0.97006 * 119.99925 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.46746 * 54.94773 * 8 7 5 30 30 H 1.08994 * 109.47061 * 294.94862 * 8 7 5 31 31 H 0.97000 * 120.00014 * 245.27291 * 10 9 8 32 32 H 0.97009 * 120.00254 * 179.97438 * 14 13 11 33 33 H 1.08997 * 117.50148 * 215.00899 * 19 9 8 34 34 H 1.09010 * 117.49961 * 0.02562 * 19 9 8 35 35 H 1.08994 * 117.50449 * 359.97438 * 20 9 8 36 36 H 1.09009 * 117.49494 * 144.98169 * 20 9 8 37 37 H 1.09001 * 109.47439 * 90.00200 * 22 21 4 38 38 H 1.09001 * 109.46524 * 209.99484 * 22 21 4 39 39 H 1.08998 * 109.47235 * 329.99687 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4124 0.0003 6 8 5.9891 0.8664 0.0005 7 7 4.8244 2.7579 0.0000 8 6 6.0485 3.5627 0.0003 9 6 5.6853 5.0435 -0.1273 10 7 5.2578 5.6981 1.1116 11 6 6.1409 5.8468 2.1475 12 1 7.1267 5.4104 2.0835 13 6 5.7692 6.5583 3.2799 14 7 4.5680 7.0906 3.3577 15 14 6.9742 6.7617 4.6928 16 1 6.3388 7.5557 5.7748 17 1 7.3521 5.4247 5.2172 18 1 8.1893 7.4655 4.2096 19 6 6.4788 5.8815 -1.1316 20 6 5.0271 5.4996 -1.4309 21 6 3.5789 -0.7583 -0.0051 22 6 4.7389 -1.7203 -0.0125 23 8 2.2851 -1.0936 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9595 2.1229 -0.0004 28 1 3.9576 3.1934 -0.0004 29 1 6.6766 3.2689 -0.8407 30 1 6.5899 3.4003 0.9323 31 1 4.3492 6.0264 1.1981 32 1 4.3079 7.5875 4.1492 33 1 6.6829 6.9199 -0.8707 34 1 7.2595 5.3778 -1.7019 35 1 4.8532 4.7450 -2.1979 36 1 4.2757 6.2867 -1.3668 37 1 5.0214 -1.9568 1.0134 38 1 4.4490 -2.6350 -0.5295 39 1 5.5853 -1.2649 -0.5266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569389360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:51 Heat of formation + Delta-G solvation = -14.478999 kcal Electronic energy + Delta-G solvation = -21313.464391 eV Core-core repulsion = 18029.792282 eV Total energy + Delta-G solvation = -3283.672109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.60413 -40.57595 -38.94770 -35.36689 -34.87413 -34.02384 -33.84212 -31.65986 -30.44707 -28.25191 -26.02505 -25.85110 -23.99867 -23.20949 -21.90470 -21.10438 -20.13701 -19.12831 -18.25702 -17.53124 -17.28653 -16.71282 -16.59978 -16.15725 -15.70355 -15.48694 -15.09159 -14.89135 -14.43154 -14.19216 -14.10816 -13.81745 -13.70088 -13.54581 -13.45150 -13.22519 -12.93298 -12.82235 -12.48398 -12.32302 -12.24356 -11.99746 -11.59910 -11.18394 -10.97481 -10.82598 -10.61775 -10.03642 -9.35806 -9.04494 -7.96808 -5.25663 0.30954 1.02526 1.45838 1.47536 1.53368 1.71396 2.20388 2.33511 2.52534 3.09119 3.37255 3.50878 3.64742 3.77748 3.82374 3.87459 4.18126 4.27427 4.30475 4.44962 4.55709 4.60511 4.69673 4.73943 4.75304 4.80924 4.92770 4.95470 5.02575 5.04313 5.16781 5.23035 5.37052 5.41354 5.49209 5.54085 6.04396 6.25989 6.58646 7.20967 7.32244 8.05024 8.29099 9.25471 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.004305 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.838795 B = 6502.135257 C = 6732.725001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.012 4.012 3 C -0.199 4.199 4 C -0.265 4.265 5 C 0.581 3.419 6 O -0.582 6.582 7 N -0.698 5.698 8 C 0.161 3.839 9 C 0.099 3.901 10 N -0.698 5.698 11 C -0.233 4.233 12 H 0.069 0.931 13 C -0.067 4.067 14 N -0.965 5.965 15 Si 0.965 3.035 16 H -0.294 1.294 17 H -0.284 1.284 18 H -0.278 1.278 19 C -0.181 4.181 20 C -0.153 4.153 21 C 0.068 3.932 22 C -0.078 4.078 23 O -0.179 6.179 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.169 0.831 28 H 0.407 0.593 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.377 0.623 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -14.690 -11.059 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.218 4.218 4 C -0.270 4.270 5 C 0.371 3.629 6 O -0.465 6.465 7 N -0.347 5.347 8 C 0.035 3.965 9 C 0.006 3.994 10 N -0.337 5.337 11 C -0.365 4.365 12 H 0.087 0.913 13 C -0.260 4.260 14 N -0.615 5.615 15 Si 0.794 3.206 16 H -0.220 1.220 17 H -0.211 1.211 18 H -0.204 1.204 19 C -0.222 4.222 20 C -0.191 4.191 21 C 0.014 3.986 22 C -0.134 4.134 23 O -0.076 6.076 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.187 0.813 28 H 0.243 0.757 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.211 0.789 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.862 -15.300 -10.926 20.014 hybrid contribution 0.111 1.115 1.223 1.658 sum -6.752 -14.186 -9.703 18.465 Atomic orbital electron populations 1.20543 0.81603 1.05472 1.05120 1.22976 0.95544 0.82856 1.04662 1.22832 0.89959 1.00798 1.08214 1.21215 0.94096 0.93996 1.17667 1.17537 0.87694 0.82140 0.75575 1.90692 1.30036 1.72485 1.53255 1.45644 1.10465 1.05105 1.73488 1.21004 0.86128 0.88726 1.00639 1.20345 1.04976 0.90039 0.84016 1.41796 1.11878 1.68735 1.11247 1.19390 0.95894 1.26047 0.95144 0.91277 1.25425 0.98479 1.01003 1.01050 1.69778 1.20183 1.41602 1.29928 0.85345 0.78565 0.77395 0.79274 1.21984 1.21088 1.20372 1.23374 0.94943 1.00743 1.03100 1.23138 0.95893 1.03329 0.96733 1.23127 0.83664 0.94103 0.97667 1.20626 0.90898 0.96961 1.04882 1.83706 1.15927 1.36196 1.71735 0.88193 0.89365 0.87770 0.81320 0.75732 0.90647 0.94154 0.78927 0.94000 0.90230 0.87453 0.86622 0.88899 0.88872 0.87846 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.40 71.24 0.74 -0.10 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.20 -4.94 10.48 23.65 0.25 -4.70 16 4 C -0.27 -8.03 6.31 -18.99 -0.12 -8.15 16 5 C 0.58 20.58 7.81 86.65 0.68 21.25 16 6 O -0.58 -23.31 14.84 -4.08 -0.06 -23.37 16 7 N -0.70 -23.78 5.51 -466.42 -2.57 -26.35 16 8 C 0.16 5.98 5.73 86.38 0.49 6.48 16 9 C 0.10 3.73 2.15 3.60 0.01 3.74 16 10 N -0.70 -33.78 5.49 -303.37 -1.67 -35.45 16 11 C -0.23 -12.76 9.56 84.03 0.80 -11.96 16 12 H 0.07 3.75 7.76 -2.91 -0.02 3.73 16 13 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 14 N -0.96 -57.76 13.06 21.65 0.28 -57.48 16 15 Si 0.96 46.42 29.55 68.60 2.03 48.45 16 16 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 17 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C -0.18 -6.03 10.11 30.61 0.31 -5.72 16 20 C -0.15 -4.58 10.14 30.61 0.31 -4.27 16 21 C 0.07 1.81 7.37 25.26 0.19 2.00 16 22 C -0.08 -1.68 9.89 71.24 0.70 -0.98 16 23 O -0.18 -4.34 10.52 4.42 0.05 -4.30 16 24 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.17 3.60 7.74 -2.91 -0.02 3.57 16 28 H 0.41 12.71 7.65 -92.70 -0.71 12.00 16 29 H 0.08 2.58 7.94 -2.39 -0.02 2.57 16 30 H 0.04 1.78 7.73 -2.39 -0.02 1.76 16 31 H 0.38 19.46 8.04 -92.71 -0.75 18.72 16 32 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.11 3.03 8.08 -2.38 -0.02 3.02 16 35 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 2.37 6.49 -2.39 -0.02 2.35 16 Total: -1.00 -69.16 337.92 2.69 -66.47 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.38 Total: 37.84 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.01 Total: -5.82 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -3.95 Total: -119.28 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.01 Total: -27.66 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -69.16 2.69 -66.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569389360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.989 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds