Wall clock time and date at job start Tue Mar 31 2020 00:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33649 * 125.80432 * 2 1 4 4 C 1.34212 * 110.91033 * 179.97438 * 3 2 1 5 5 C 1.34177 * 109.12290 * 359.71486 * 4 3 2 6 6 C 1.36415 * 125.79864 * 179.97438 * 2 1 3 7 7 C 1.47378 * 127.19194 * 0.02562 * 6 2 1 8 8 O 1.21608 * 120.00225 * 6.61460 * 7 6 2 9 9 N 1.34780 * 119.99838 * 186.61625 * 7 6 2 10 10 C 1.47421 * 125.64901 * 5.69486 * 9 7 6 11 11 C 1.54910 * 104.83402 * 155.89817 * 10 9 7 12 12 C 1.55159 * 101.58241 * 37.00963 * 11 10 9 13 13 C 1.47027 * 125.64870 * 185.72708 * 9 7 6 14 14 H 1.09005 * 110.00704 * 300.52367 * 13 9 7 15 15 C 1.53001 * 109.88337 * 61.61640 * 13 9 7 16 16 N 1.46496 * 109.46879 * 183.47372 * 15 13 9 17 17 C 1.36942 * 120.00115 * 175.02140 * 16 15 13 18 18 H 1.07999 * 119.99629 * 5.06355 * 17 16 15 19 19 C 1.38812 * 120.00171 * 185.06501 * 17 16 15 20 20 N 1.31616 * 119.99770 * 175.09465 * 19 17 16 21 21 Si 1.86800 * 120.00031 * 355.09138 * 19 17 16 22 22 H 1.48500 * 109.47324 * 275.13368 * 21 19 17 23 23 H 1.48501 * 109.47093 * 35.13142 * 21 19 17 24 24 H 1.48495 * 109.47141 * 155.12971 * 21 19 17 25 25 H 1.09007 * 109.47043 * 274.58617 * 1 2 3 26 26 H 1.09001 * 109.47121 * 34.57939 * 1 2 3 27 27 H 1.08997 * 109.47224 * 154.58406 * 1 2 3 28 28 H 1.07998 * 125.43950 * 179.97438 * 4 3 2 29 29 H 1.08005 * 127.02611 * 180.27384 * 5 4 3 30 30 H 1.09002 * 110.36947 * 37.05795 * 10 9 7 31 31 H 1.09007 * 110.37239 * 274.73373 * 10 9 7 32 32 H 1.09006 * 110.99877 * 278.93753 * 11 10 9 33 33 H 1.08999 * 111.00859 * 155.08688 * 11 10 9 34 34 H 1.09001 * 110.71703 * 206.14105 * 12 11 10 35 35 H 1.08990 * 110.87270 * 82.93550 * 12 11 10 36 36 H 1.08993 * 109.47036 * 63.47198 * 15 13 9 37 37 H 1.09006 * 109.46931 * 303.47204 * 15 13 9 38 38 H 0.96996 * 120.00273 * 355.02274 * 16 15 13 39 39 H 0.97003 * 119.99728 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5991 0.0073 6 6 2.3050 -1.1064 0.0005 7 6 1.8738 -2.5157 0.0006 8 8 0.6956 -2.7912 -0.1211 9 7 2.7854 -3.4993 0.1356 10 6 4.2215 -3.3082 0.4086 11 6 4.6791 -4.6322 1.0699 12 6 3.8451 -5.6778 0.2833 13 6 2.5124 -4.9404 0.0344 14 1 1.7798 -5.2349 0.7858 15 6 1.9867 -5.2735 -1.3633 16 7 1.6397 -6.6953 -1.4284 17 6 1.0501 -7.2054 -2.5543 18 1 0.9153 -6.5795 -3.4240 19 6 0.6256 -8.5268 -2.5776 20 7 -0.0271 -8.9900 -3.6224 21 14 0.9809 -9.6477 -1.1261 22 1 2.3403 -10.2278 -1.2697 23 1 0.9075 -8.8646 0.1336 24 1 -0.0227 -10.7415 -1.0881 25 1 -0.3633 0.0822 1.0244 26 1 -0.3633 0.8461 -0.5833 27 1 -0.3633 -0.9282 -0.4410 28 1 4.4173 1.4283 0.0003 29 1 4.5927 -1.1841 0.0135 30 1 4.3698 -2.4719 1.0917 31 1 4.7655 -3.1408 -0.5211 32 1 4.4254 -4.6475 2.1299 33 1 5.7470 -4.7937 0.9230 34 1 3.6840 -6.5732 0.8837 35 1 4.3285 -5.9298 -0.6604 36 1 2.7562 -5.0531 -2.1030 37 1 1.1007 -4.6734 -1.5708 38 1 1.8275 -7.2755 -0.6741 39 1 -0.3233 -9.9135 -3.6389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569530550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:17 Heat of formation + Delta-G solvation = 4.433636 kcal Electronic energy + Delta-G solvation = -21844.308480 eV Core-core repulsion = 18561.456484 eV Total energy + Delta-G solvation = -3282.851996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.72331 -39.92565 -37.39424 -34.72470 -33.24886 -32.15585 -31.49931 -31.29132 -29.15189 -27.09256 -25.36737 -24.02138 -22.15114 -21.98019 -21.62144 -19.97427 -18.93873 -17.77511 -17.17223 -16.63680 -16.32373 -16.03764 -15.17627 -14.41326 -14.30101 -14.00082 -13.84714 -13.63646 -13.25988 -13.14273 -13.08691 -12.89557 -12.69477 -12.56247 -12.31488 -11.84051 -11.67826 -11.23370 -11.05957 -10.88406 -10.66879 -10.48821 -10.12394 -9.93025 -9.75276 -9.55177 -8.80555 -8.78215 -8.42060 -7.17434 -5.71407 -3.06707 1.28914 1.89812 2.64108 3.06985 3.40460 3.40934 3.42975 3.48378 4.34663 4.46176 4.52792 4.63928 4.72152 4.90700 4.91937 5.10614 5.27267 5.28855 5.37927 5.40457 5.47990 5.51705 5.56712 5.65065 5.72175 5.78310 5.84596 5.95368 6.00590 6.07144 6.12640 6.28933 6.44724 6.75249 6.87360 6.92685 7.65362 8.05889 8.33161 8.47387 9.26362 9.98260 10.18645 11.47097 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.004469 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.558637 B = 6263.233436 C = 7004.783808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.077 3.923 3 O -0.178 6.178 4 C -0.044 4.044 5 C -0.195 4.195 6 C -0.238 4.238 7 C 0.602 3.398 8 O -0.529 6.529 9 N -0.604 5.604 10 C 0.095 3.905 11 C -0.135 4.135 12 C -0.127 4.127 13 C 0.128 3.872 14 H 0.077 0.923 15 C 0.151 3.849 16 N -0.751 5.751 17 C -0.241 4.241 18 H 0.089 0.911 19 C 0.005 3.995 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.291 1.291 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.206 0.794 29 H 0.164 0.836 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.359 0.641 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.634 19.429 11.935 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.024 3.976 3 O -0.074 6.074 4 C -0.110 4.110 5 C -0.214 4.214 6 C -0.242 4.242 7 C 0.392 3.608 8 O -0.407 6.407 9 N -0.338 5.338 10 C -0.028 4.028 11 C -0.173 4.173 12 C -0.165 4.165 13 C 0.025 3.975 14 H 0.095 0.905 15 C 0.023 3.977 16 N -0.397 5.397 17 C -0.371 4.371 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.582 5.582 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.204 1.204 24 H -0.217 1.217 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.223 0.777 29 H 0.181 0.819 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.192 0.808 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.725 19.624 11.630 25.207 hybrid contribution 0.603 -1.043 0.908 1.509 sum 11.329 18.581 12.538 25.116 Atomic orbital electron populations 1.20703 0.83668 1.05945 1.04066 1.22834 0.94133 0.82996 0.97652 1.83754 1.17166 1.35081 1.71443 1.23858 0.83574 0.96411 1.07167 1.23304 0.97158 0.94480 1.06496 1.21134 0.93294 0.93761 1.16033 1.16803 0.84575 0.82979 0.76459 1.90793 1.16329 1.83370 1.50242 1.48191 1.08443 1.06180 1.71009 1.22632 0.81657 0.98648 0.99851 1.22821 1.00331 0.94291 0.99848 1.22726 0.94525 0.97759 1.01458 1.21846 0.97377 0.78646 0.99606 0.90456 1.20917 0.98058 0.86658 0.92062 1.42513 1.75286 1.04158 1.17697 1.19040 1.30567 0.95516 0.91937 0.89300 1.24656 0.99936 0.97261 0.97241 1.69715 1.42856 1.15664 1.29976 0.86587 0.77801 0.81078 0.83216 1.20982 1.20365 1.21710 0.89563 0.90337 0.86593 0.77717 0.81858 0.90101 0.91208 0.90749 0.89846 0.90116 0.89616 0.95899 0.93755 0.80836 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.07 36.01 0.36 -0.58 16 2 C 0.08 0.95 7.37 -34.96 -0.26 0.70 16 3 O -0.18 -1.95 10.52 7.67 0.08 -1.87 16 4 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 5 C -0.20 -1.97 9.29 -37.45 -0.35 -2.31 16 6 C -0.24 -3.23 6.20 -103.28 -0.64 -3.87 16 7 C 0.60 10.00 7.56 -12.54 -0.09 9.91 16 8 O -0.53 -10.56 13.95 5.27 0.07 -10.49 16 9 N -0.60 -9.09 3.07 -164.28 -0.50 -9.59 16 10 C 0.10 1.00 5.13 -2.53 -0.01 0.99 16 11 C -0.13 -1.32 7.08 -24.58 -0.17 -1.50 16 12 C -0.13 -1.72 6.02 -24.89 -0.15 -1.87 16 13 C 0.13 2.19 2.94 -66.95 -0.20 1.99 16 14 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 15 C 0.15 3.26 5.64 -4.04 -0.02 3.23 16 16 N -0.75 -18.80 5.25 -59.91 -0.31 -19.11 16 17 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 18 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -30.18 13.97 55.49 0.78 -29.40 16 21 Si 0.88 22.53 27.66 -169.99 -4.70 17.83 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.70 6.64 56.52 0.38 -6.32 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.12 1.53 6.14 -51.93 -0.32 1.21 16 28 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.16 1.27 5.22 -52.48 -0.27 0.99 16 30 H 0.08 0.70 5.90 -51.93 -0.31 0.40 16 31 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.22 7.79 -51.93 -0.40 0.82 16 36 H 0.02 0.50 8.06 -51.93 -0.42 0.08 16 37 H 0.04 1.08 6.94 -51.93 -0.36 0.72 16 38 H 0.36 8.57 5.35 -40.82 -0.22 8.35 16 39 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -35.97 317.03 -6.50 -42.47 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.25 Total: 5.99 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.44 Total: -0.61 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.04 Total: -58.11 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.15 Total: -12.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.70 Total: 17.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.97 -6.50 -42.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569530550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.899 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds