Wall clock time and date at job start Tue Mar 31 2020 00:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33649 * 125.80432 * 2 1 4 4 C 1.34212 * 110.91033 * 179.97438 * 3 2 1 5 5 C 1.34177 * 109.12290 * 359.71486 * 4 3 2 6 6 C 1.36415 * 125.79864 * 179.97438 * 2 1 3 7 7 C 1.47378 * 127.19194 * 0.02562 * 6 2 1 8 8 O 1.21608 * 120.00225 * 6.61460 * 7 6 2 9 9 N 1.34780 * 119.99838 * 186.61625 * 7 6 2 10 10 C 1.47421 * 125.64901 * 5.69486 * 9 7 6 11 11 C 1.54910 * 104.83402 * 155.89817 * 10 9 7 12 12 C 1.55159 * 101.58241 * 37.00963 * 11 10 9 13 13 C 1.47027 * 125.64870 * 185.72708 * 9 7 6 14 14 H 1.09005 * 110.00704 * 300.52367 * 13 9 7 15 15 C 1.53001 * 109.88337 * 61.61640 * 13 9 7 16 16 N 1.46496 * 109.46879 * 183.47372 * 15 13 9 17 17 C 1.36942 * 120.00115 * 175.02140 * 16 15 13 18 18 H 1.07999 * 119.99629 * 5.06355 * 17 16 15 19 19 C 1.38812 * 120.00171 * 185.06501 * 17 16 15 20 20 N 1.31616 * 119.99770 * 175.09465 * 19 17 16 21 21 Si 1.86800 * 120.00031 * 355.09138 * 19 17 16 22 22 H 1.48500 * 109.47324 * 275.13368 * 21 19 17 23 23 H 1.48501 * 109.47093 * 35.13142 * 21 19 17 24 24 H 1.48495 * 109.47141 * 155.12971 * 21 19 17 25 25 H 1.09007 * 109.47043 * 274.58617 * 1 2 3 26 26 H 1.09001 * 109.47121 * 34.57939 * 1 2 3 27 27 H 1.08997 * 109.47224 * 154.58406 * 1 2 3 28 28 H 1.07998 * 125.43950 * 179.97438 * 4 3 2 29 29 H 1.08005 * 127.02611 * 180.27384 * 5 4 3 30 30 H 1.09002 * 110.36947 * 37.05795 * 10 9 7 31 31 H 1.09007 * 110.37239 * 274.73373 * 10 9 7 32 32 H 1.09006 * 110.99877 * 278.93753 * 11 10 9 33 33 H 1.08999 * 111.00859 * 155.08688 * 11 10 9 34 34 H 1.09001 * 110.71703 * 206.14105 * 12 11 10 35 35 H 1.08990 * 110.87270 * 82.93550 * 12 11 10 36 36 H 1.08993 * 109.47036 * 63.47198 * 15 13 9 37 37 H 1.09006 * 109.46931 * 303.47204 * 15 13 9 38 38 H 0.96996 * 120.00273 * 355.02274 * 16 15 13 39 39 H 0.97003 * 119.99728 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5991 0.0073 6 6 2.3050 -1.1064 0.0005 7 6 1.8738 -2.5157 0.0006 8 8 0.6956 -2.7912 -0.1211 9 7 2.7854 -3.4993 0.1356 10 6 4.2215 -3.3082 0.4086 11 6 4.6791 -4.6322 1.0699 12 6 3.8451 -5.6778 0.2833 13 6 2.5124 -4.9404 0.0344 14 1 1.7798 -5.2349 0.7858 15 6 1.9867 -5.2735 -1.3633 16 7 1.6397 -6.6953 -1.4284 17 6 1.0501 -7.2054 -2.5543 18 1 0.9153 -6.5795 -3.4240 19 6 0.6256 -8.5268 -2.5776 20 7 -0.0271 -8.9900 -3.6224 21 14 0.9809 -9.6477 -1.1261 22 1 2.3403 -10.2278 -1.2697 23 1 0.9075 -8.8646 0.1336 24 1 -0.0227 -10.7415 -1.0881 25 1 -0.3633 0.0822 1.0244 26 1 -0.3633 0.8461 -0.5833 27 1 -0.3633 -0.9282 -0.4410 28 1 4.4173 1.4283 0.0003 29 1 4.5927 -1.1841 0.0135 30 1 4.3698 -2.4719 1.0917 31 1 4.7655 -3.1408 -0.5211 32 1 4.4254 -4.6475 2.1299 33 1 5.7470 -4.7937 0.9230 34 1 3.6840 -6.5732 0.8837 35 1 4.3285 -5.9298 -0.6604 36 1 2.7562 -5.0531 -2.1030 37 1 1.1007 -4.6734 -1.5708 38 1 1.8275 -7.2755 -0.6741 39 1 -0.3233 -9.9135 -3.6389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569530550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:16 Heat of formation + Delta-G solvation = -21.480227 kcal Electronic energy + Delta-G solvation = -21845.432189 eV Core-core repulsion = 18561.456484 eV Total energy + Delta-G solvation = -3283.975705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.55659 -41.12336 -38.66711 -36.63081 -34.33892 -33.57954 -32.98047 -32.30249 -30.71887 -27.96944 -26.90906 -25.32938 -23.88299 -22.93732 -22.70008 -21.22240 -20.09913 -19.55109 -18.37335 -17.74641 -17.26412 -17.06421 -16.49946 -16.32369 -15.59706 -15.45168 -15.11339 -14.87252 -14.70947 -14.42891 -14.02906 -13.96182 -13.85372 -13.75666 -13.60788 -13.24382 -12.98214 -12.80474 -12.68707 -12.28296 -11.95965 -11.87052 -11.79179 -11.62442 -11.08328 -10.96338 -10.79703 -9.82010 -9.45759 -9.38477 -8.07632 -5.43685 0.30314 1.14361 1.34830 1.40907 1.47693 1.74688 2.03831 2.26226 2.45603 3.21379 3.41108 3.56656 3.63387 3.73559 3.85084 3.92726 3.95432 4.21016 4.27591 4.33268 4.47090 4.57355 4.57879 4.66702 4.72637 4.81453 4.88715 4.89622 4.97198 5.08425 5.11670 5.20064 5.31769 5.37608 5.43580 5.68253 6.04746 6.14909 6.50794 7.00252 7.11028 7.72718 7.97489 9.13968 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.004469 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.558637 B = 6263.233436 C = 7004.783808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.027 4.027 5 C -0.204 4.204 6 C -0.266 4.266 7 C 0.589 3.411 8 O -0.581 6.581 9 N -0.605 5.605 10 C 0.088 3.912 11 C -0.118 4.118 12 C -0.125 4.125 13 C 0.133 3.867 14 H 0.059 0.941 15 C 0.157 3.843 16 N -0.747 5.747 17 C -0.246 4.246 18 H 0.045 0.955 19 C -0.060 4.060 20 N -0.982 5.982 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.255 1.255 24 H -0.293 1.293 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.254 0.746 29 H 0.189 0.811 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.005 0.995 38 H 0.369 0.631 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.042 20.453 14.548 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.092 4.092 5 C -0.223 4.223 6 C -0.270 4.270 7 C 0.381 3.619 8 O -0.463 6.463 9 N -0.338 5.338 10 C -0.033 4.033 11 C -0.156 4.156 12 C -0.163 4.163 13 C 0.029 3.971 14 H 0.077 0.923 15 C 0.029 3.971 16 N -0.394 5.394 17 C -0.377 4.377 18 H 0.063 0.937 19 C -0.252 4.252 20 N -0.632 5.632 21 Si 0.786 3.214 22 H -0.188 1.188 23 H -0.179 1.179 24 H -0.219 1.219 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.270 0.730 29 H 0.206 0.794 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.203 0.797 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.202 20.691 14.269 28.869 hybrid contribution -0.483 -1.244 -0.021 1.334 sum 13.718 19.447 14.248 27.738 Atomic orbital electron populations 1.20647 0.83499 1.05167 1.04962 1.22989 0.94725 0.83345 0.97626 1.83782 1.18249 1.34368 1.71196 1.24809 0.83368 0.96839 1.04150 1.23547 0.96130 0.95280 1.07298 1.21128 0.95817 0.92132 1.17971 1.17422 0.84206 0.84573 0.75652 1.90760 1.18567 1.84379 1.52573 1.48314 1.10424 1.04867 1.70189 1.23003 0.78685 1.00308 1.01340 1.22844 1.01498 0.91650 0.99620 1.22715 0.92780 0.98764 1.02074 1.21646 0.99126 0.80847 0.95462 0.92318 1.20896 0.96398 0.84249 0.95555 1.42377 1.74830 1.05634 1.16515 1.18953 1.30987 0.95503 0.92259 0.93653 1.25602 0.99647 0.98935 1.00985 1.69914 1.44231 1.16235 1.32805 0.85355 0.78249 0.78262 0.79502 1.18823 1.17931 1.21902 0.88310 0.88180 0.89707 0.72984 0.79442 0.87545 0.89821 0.89667 0.86444 0.89334 0.90275 0.96000 0.97718 0.79715 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.07 71.24 0.72 -1.22 16 2 C 0.07 1.63 7.37 25.26 0.19 1.82 16 3 O -0.18 -3.53 10.52 4.52 0.05 -3.48 16 4 C -0.03 -0.36 12.03 66.89 0.80 0.45 16 5 C -0.20 -3.49 9.29 23.65 0.22 -3.27 16 6 C -0.27 -7.11 6.20 -18.99 -0.12 -7.22 16 7 C 0.59 20.25 7.56 86.65 0.65 20.91 16 8 O -0.58 -25.03 13.95 -4.06 -0.06 -25.09 16 9 N -0.61 -17.97 3.07 -791.92 -2.43 -20.40 16 10 C 0.09 1.57 5.13 86.86 0.45 2.01 16 11 C -0.12 -1.82 7.08 31.99 0.23 -1.60 16 12 C -0.13 -3.11 6.02 31.78 0.19 -2.91 16 13 C 0.13 4.56 2.94 45.34 0.13 4.69 16 14 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 15 C 0.16 7.06 5.64 86.38 0.49 7.55 16 16 N -0.75 -38.24 5.25 -343.46 -1.80 -40.04 16 17 C -0.25 -15.24 10.47 84.03 0.88 -14.36 16 18 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 19 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 20 N -0.98 -65.45 13.97 21.65 0.30 -65.15 16 21 Si 0.96 46.50 27.66 68.60 1.90 48.39 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.25 -11.27 6.64 99.48 0.66 -10.61 16 24 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.48 6.14 -2.39 -0.01 2.46 16 28 H 0.25 0.67 8.06 -2.91 -0.02 0.65 16 29 H 0.19 2.10 5.22 -2.91 -0.02 2.09 16 30 H 0.11 1.41 5.90 -2.39 -0.01 1.39 16 31 H 0.08 1.30 7.79 -2.38 -0.02 1.29 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.09 7.79 -2.39 -0.02 2.07 16 36 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 37 H 0.00 0.25 6.94 -2.38 -0.02 0.23 16 38 H 0.37 17.35 5.35 -92.71 -0.50 16.85 16 39 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -84.53 317.03 3.79 -80.75 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.53 Total: 21.43 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.30 Total: 3.59 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -3.93 Total: -125.59 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.01 Total: -28.56 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.39 kcal Total: -84.53 3.79 -80.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569530550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.265 kcal (2) G-P(sol) polarization free energy of solvation -84.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds