Wall clock time and date at job start Tue Mar 31 2020 00:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33648 * 125.80025 * 2 1 4 4 C 1.34226 * 110.90711 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.11955 * 359.70866 * 4 3 2 6 6 C 1.36417 * 125.80068 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19172 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00118 * 352.50675 * 7 6 2 9 9 N 1.34780 * 119.99832 * 172.50117 * 7 6 2 10 10 C 1.47419 * 125.64732 * 2.02987 * 9 7 6 11 11 C 1.54911 * 104.83127 * 204.17491 * 10 9 7 12 12 C 1.55154 * 101.58403 * 322.99248 * 11 10 9 13 13 C 1.47021 * 125.64653 * 182.08563 * 9 7 6 14 14 H 1.08999 * 110.01275 * 59.40627 * 13 9 7 15 15 C 1.52999 * 109.88459 * 298.30999 * 13 9 7 16 16 N 1.46507 * 109.46992 * 75.88089 * 15 13 9 17 17 C 1.36930 * 119.99795 * 187.52603 * 16 15 13 18 18 H 1.07997 * 120.00441 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99698 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47094 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46910 * 299.99660 * 21 19 17 24 24 H 1.48499 * 109.47291 * 59.99547 * 21 19 17 25 25 H 1.09001 * 109.46830 * 270.00154 * 1 2 3 26 26 H 1.09001 * 109.47156 * 29.99395 * 1 2 3 27 27 H 1.08993 * 109.46942 * 149.99799 * 1 2 3 28 28 H 1.08003 * 125.43351 * 180.02562 * 4 3 2 29 29 H 1.08004 * 127.01790 * 180.27511 * 5 4 3 30 30 H 1.09003 * 110.36811 * 85.33888 * 10 9 7 31 31 H 1.08997 * 110.46217 * 323.05733 * 10 9 7 32 32 H 1.09004 * 111.00561 * 204.91478 * 11 10 9 33 33 H 1.09003 * 111.03897 * 81.08326 * 11 10 9 34 34 H 1.08996 * 110.72312 * 277.14053 * 12 11 10 35 35 H 1.09001 * 110.72604 * 153.86477 * 12 11 10 36 36 H 1.08996 * 109.47273 * 315.88446 * 15 13 9 37 37 H 1.08991 * 109.47139 * 195.88162 * 15 13 9 38 38 H 0.97000 * 119.99413 * 7.52860 * 16 15 13 39 39 H 0.97007 * 119.99808 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5860 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0055 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.6976 -2.7918 0.1371 9 7 2.7835 -3.4986 -0.1534 10 6 4.2393 -3.3088 -0.2871 11 6 4.7368 -4.5715 -1.0339 12 6 3.8289 -5.6721 -0.4242 13 6 2.4878 -4.9374 -0.2156 14 1 1.8179 -5.1449 -1.0500 15 6 1.8431 -5.3933 1.0948 16 7 0.4460 -4.9538 1.1305 17 6 -0.2925 -5.1118 2.2728 18 1 0.1548 -5.5608 3.1472 19 6 -1.6164 -4.6958 2.3064 20 7 -2.1617 -4.1490 1.2406 21 14 -2.6236 -4.9106 3.8649 22 1 -3.9964 -4.3895 3.6428 23 1 -2.6915 -6.3520 4.2155 24 1 -1.9835 -4.1607 4.9753 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 4.4173 1.4285 -0.0003 29 1 4.5928 -1.1840 0.0108 30 1 4.7049 -3.2415 0.6962 31 1 4.4549 -2.4136 -0.8703 32 1 5.7869 -4.7661 -0.8157 33 1 4.5735 -4.4808 -2.1078 34 1 4.2302 -6.0196 0.5277 35 1 3.7094 -6.5027 -1.1199 36 1 2.3825 -4.9579 1.9359 37 1 1.8837 -6.4805 1.1607 38 1 0.0442 -4.5509 0.3449 39 1 -1.6385 -4.0371 0.4314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569530551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:20 Heat of formation + Delta-G solvation = -7.703739 kcal Electronic energy + Delta-G solvation = -22625.434957 eV Core-core repulsion = 19342.056645 eV Total energy + Delta-G solvation = -3283.378312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.55606 -41.03568 -38.40231 -36.57572 -34.30332 -33.16515 -32.95816 -32.22195 -30.14340 -27.97408 -26.49184 -25.15373 -24.38343 -22.78810 -22.62915 -21.21235 -19.73886 -19.28302 -18.33559 -17.65033 -17.31115 -17.18259 -16.66057 -15.77461 -15.53292 -15.31423 -15.18179 -14.81354 -14.63265 -14.32575 -13.99088 -13.94448 -13.81709 -13.63962 -13.39785 -12.93381 -12.73833 -12.56433 -12.50480 -12.18575 -11.86746 -11.82945 -11.63900 -11.16167 -10.89115 -10.78086 -10.67014 -9.72531 -9.41984 -8.87586 -8.27912 -5.15158 0.36356 1.15251 1.51569 1.64487 1.79360 1.80891 2.12978 2.41458 2.74543 3.47402 3.51461 3.61092 3.64143 3.79403 3.90485 3.98036 4.17586 4.29074 4.29243 4.33331 4.51598 4.52864 4.60914 4.67889 4.72141 4.77796 4.82147 4.88537 4.94120 5.08463 5.11430 5.16957 5.33838 5.39043 5.53455 5.60876 6.04489 6.62663 6.66789 7.19872 7.47232 8.25564 8.37790 9.25392 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014336 B = 0.007197 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.721056 B = 3889.543188 C = 5464.888903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.057 3.943 3 O -0.181 6.181 4 C -0.026 4.026 5 C -0.208 4.208 6 C -0.259 4.259 7 C 0.570 3.430 8 O -0.538 6.538 9 N -0.610 5.610 10 C 0.081 3.919 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.131 3.869 14 H 0.047 0.953 15 C 0.150 3.850 16 N -0.743 5.743 17 C -0.338 4.338 18 H 0.050 0.950 19 C -0.105 4.105 20 N -0.968 5.968 21 Si 1.128 2.872 22 H -0.289 1.289 23 H -0.276 1.276 24 H -0.285 1.285 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.258 0.742 29 H 0.193 0.807 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.005 0.995 37 H 0.022 0.978 38 H 0.374 0.626 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.579 7.465 -6.303 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.004 3.996 3 O -0.077 6.077 4 C -0.091 4.091 5 C -0.226 4.226 6 C -0.263 4.263 7 C 0.361 3.639 8 O -0.415 6.415 9 N -0.345 5.345 10 C -0.040 4.040 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.027 3.973 14 H 0.065 0.935 15 C 0.022 3.978 16 N -0.394 5.394 17 C -0.470 4.470 18 H 0.068 0.932 19 C -0.297 4.297 20 N -0.615 5.615 21 Si 0.953 3.047 22 H -0.215 1.215 23 H -0.202 1.202 24 H -0.212 1.212 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.274 0.726 29 H 0.210 0.790 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.023 0.977 37 H 0.039 0.961 38 H 0.213 0.787 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.423 7.815 -5.363 20.718 hybrid contribution 0.999 -0.466 -0.676 1.293 sum 19.422 7.349 -6.039 21.626 Atomic orbital electron populations 1.20388 0.84240 1.04512 1.03781 1.22796 0.94279 0.83681 0.98827 1.83761 1.18298 1.34224 1.71397 1.24883 0.83340 0.96877 1.04024 1.23620 0.95990 0.95280 1.07703 1.21289 0.95786 0.92588 1.16657 1.17534 0.84960 0.84602 0.76847 1.90838 1.18446 1.83079 1.49184 1.48297 1.08363 1.05209 1.72639 1.23035 0.78520 1.01115 1.01308 1.22818 1.00828 0.91818 1.00046 1.22635 0.91312 0.98399 1.02960 1.21859 0.98601 0.80927 0.95910 0.93456 1.21085 0.85424 0.95902 0.95383 1.42934 1.08618 1.73965 1.13852 1.20311 0.96562 1.37077 0.93033 0.93150 1.27147 0.96501 0.99435 1.06632 1.70826 1.38871 1.48247 1.03562 0.82654 0.74466 0.76582 0.70990 1.21515 1.20221 1.21225 0.90690 0.87823 0.90492 0.72582 0.78985 0.90757 0.87847 0.86211 0.89957 0.89609 0.88371 0.97746 0.96055 0.78728 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 9.82 71.24 0.70 -1.85 16 2 C 0.06 1.93 7.37 25.26 0.19 2.11 16 3 O -0.18 -4.82 10.52 4.40 0.05 -4.78 16 4 C -0.03 -0.50 12.03 66.89 0.80 0.31 16 5 C -0.21 -4.75 9.30 23.65 0.22 -4.53 16 6 C -0.26 -9.01 6.22 -18.99 -0.12 -9.13 16 7 C 0.57 24.37 7.64 86.65 0.66 25.03 16 8 O -0.54 -29.03 11.07 -4.06 -0.04 -29.08 16 9 N -0.61 -21.24 3.06 -791.95 -2.43 -23.67 16 10 C 0.08 1.74 5.35 86.86 0.46 2.20 16 11 C -0.12 -1.84 7.08 31.99 0.23 -1.62 16 12 C -0.11 -2.56 6.44 31.78 0.20 -2.36 16 13 C 0.13 4.72 3.07 45.34 0.14 4.86 16 14 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 15 C 0.15 7.00 5.61 86.38 0.48 7.48 16 16 N -0.74 -44.09 4.16 -343.46 -1.43 -45.52 16 17 C -0.34 -21.82 9.99 84.04 0.84 -20.98 16 18 H 0.05 3.18 7.83 -2.91 -0.02 3.16 16 19 C -0.11 -6.84 5.50 84.86 0.47 -6.38 16 20 N -0.97 -67.38 13.70 21.65 0.30 -67.09 16 21 Si 1.13 57.75 29.92 68.60 2.05 59.80 16 22 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.08 3.22 6.67 -2.39 -0.02 3.21 16 28 H 0.26 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.19 3.05 5.14 -2.91 -0.01 3.04 16 30 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 31 H 0.10 1.80 5.15 -2.39 -0.01 1.78 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.82 7.85 -2.39 -0.02 1.80 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 38 H 0.37 23.57 3.97 -92.71 -0.37 23.20 16 39 H 0.25 17.72 6.62 -92.70 -0.61 17.11 16 Total: -1.00 -90.11 313.61 4.63 -85.48 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.86 Total: 29.70 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 5.28 Total: -4.86 kcal Atomic # 7 Polarization: -132.71 SS G_CDS: -3.56 Total: -136.27 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: 0.00 Total: -33.86 kcal Atomic # 14 Polarization: 57.75 SS G_CDS: 2.05 Total: 59.80 kcal Total: -90.11 4.63 -85.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569530551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.777 kcal (2) G-P(sol) polarization free energy of solvation -90.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds