Wall clock time and date at job start Tue Mar 31 2020 00:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35128 * 125.61624 * 2 1 4 4 C 1.40360 * 107.11615 * 179.73125 * 3 2 1 5 5 C 1.36538 * 106.70705 * 359.97438 * 4 3 2 6 6 C 1.46657 * 125.99083 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99537 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00342 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47501 * 175.91511 * 9 8 6 11 11 N 1.46497 * 112.85276 * 292.02692 * 10 9 8 12 12 C 1.36943 * 119.99565 * 294.78770 * 11 10 9 13 13 H 1.07994 * 120.00496 * 353.79628 * 12 11 10 14 14 C 1.38819 * 119.99589 * 173.80186 * 12 11 10 15 15 N 1.31625 * 119.99683 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00195 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47022 * 90.00249 * 16 14 12 18 18 H 1.48504 * 109.46955 * 210.00230 * 16 14 12 19 19 H 1.48496 * 109.47299 * 330.00234 * 16 14 12 20 20 C 1.53785 * 113.61654 * 160.82539 * 10 9 8 21 21 C 1.53950 * 87.02055 * 220.04966 * 20 10 9 22 22 C 1.53783 * 113.61140 * 63.21926 * 10 9 8 23 23 O 1.33924 * 125.61379 * 179.68316 * 2 1 3 24 24 H 1.08998 * 109.46918 * 90.00640 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.00180 * 1 2 3 26 26 H 1.09002 * 109.47166 * 330.00565 * 1 2 3 27 27 H 1.08007 * 126.44162 * 359.76352 * 3 2 1 28 28 H 1.07999 * 126.64282 * 179.97438 * 4 3 2 29 29 H 0.97004 * 120.00364 * 359.97438 * 8 6 5 30 30 H 1.08997 * 109.47007 * 295.91933 * 9 8 6 31 31 H 1.09006 * 109.47249 * 55.90995 * 9 8 6 32 32 H 0.96995 * 120.00167 * 114.78000 * 11 10 9 33 33 H 0.96992 * 119.99935 * 180.02562 * 15 14 12 34 34 H 1.09000 * 113.61517 * 334.57461 * 20 10 9 35 35 H 1.09005 * 113.60793 * 105.47070 * 20 10 9 36 36 H 1.08998 * 113.53920 * 270.81450 * 21 20 10 37 37 H 1.09003 * 113.66420 * 139.93292 * 21 20 10 38 38 H 1.08994 * 113.61918 * 254.52866 * 22 10 9 39 39 H 1.09001 * 113.61453 * 25.43963 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6531 0.0063 5 6 3.5823 -0.7116 0.0104 6 6 4.7414 -1.6101 0.0170 7 8 5.8680 -1.1499 0.0197 8 7 4.5590 -2.9454 0.0201 9 6 5.7168 -3.8430 0.0272 10 6 5.2381 -5.2923 0.1322 11 7 4.6293 -5.5978 1.4292 12 6 5.3898 -5.5635 2.5675 13 1 6.4567 -5.4104 2.4998 14 6 4.7892 -5.7258 3.8085 15 7 5.5202 -5.6934 4.9026 16 14 2.9438 -5.9902 3.9257 17 1 2.6475 -7.4442 3.8691 18 1 2.4444 -5.4327 5.2084 19 1 2.2724 -5.3038 2.7929 20 6 6.2898 -6.3223 -0.3126 21 6 5.1358 -7.0938 -0.9783 22 6 4.3929 -5.7503 -1.0681 23 8 2.2869 -1.0887 0.0060 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 -0.0036 28 1 4.5113 1.2704 0.0076 29 1 3.6610 -3.3123 0.0183 30 1 6.2828 -3.7132 -0.8952 31 1 6.3536 -3.6079 0.8802 32 1 3.6876 -5.8243 1.4816 33 1 5.1007 -5.8071 5.7697 34 1 7.0165 -5.9259 -1.0218 35 1 6.7539 -6.8579 0.5157 36 1 4.6556 -7.8148 -0.3168 37 1 5.3944 -7.5155 -1.9495 38 1 3.3278 -5.8249 -0.8492 39 1 4.6000 -5.1973 -1.9844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570096367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:13 Heat of formation + Delta-G solvation = 11.206553 kcal Electronic energy + Delta-G solvation = -21792.926779 eV Core-core repulsion = 18510.368479 eV Total energy + Delta-G solvation = -3282.558300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.68305 -39.54012 -38.42270 -34.18890 -33.33579 -33.17504 -32.04829 -30.60048 -28.36830 -26.49657 -25.37420 -23.70953 -22.39699 -21.61917 -21.33649 -20.04134 -18.59321 -17.95055 -17.63324 -16.46628 -15.71508 -15.57751 -15.10428 -14.62881 -14.36069 -14.24591 -13.84163 -13.41416 -13.19457 -13.06624 -12.99892 -12.94514 -12.70636 -12.34136 -12.06386 -11.90496 -11.48670 -11.21665 -10.95475 -10.47821 -10.30073 -10.21133 -10.03986 -9.97091 -9.70183 -9.53389 -8.93532 -8.76969 -8.40109 -7.35527 -5.81226 -3.19011 1.12736 2.31365 2.64743 3.32473 3.34188 3.39640 3.41391 3.53234 4.53740 4.53880 4.87945 4.89111 4.97393 5.06706 5.13425 5.18924 5.20651 5.29958 5.40202 5.43757 5.63749 5.66577 5.78810 5.89416 5.96443 6.02149 6.09573 6.19012 6.20290 6.34594 6.47277 6.61303 6.74261 6.80800 6.87852 6.95994 7.80303 7.95398 8.36926 8.39731 9.14184 9.85932 10.03988 11.36597 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.005846 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.934923 B = 4788.806560 C = 5566.289097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.224 4.224 4 C -0.126 4.126 5 C -0.068 4.068 6 C 0.597 3.403 7 O -0.528 6.528 8 N -0.695 5.695 9 C 0.117 3.883 10 C 0.178 3.822 11 N -0.724 5.724 12 C -0.242 4.242 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.881 3.119 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.146 4.146 21 C -0.129 4.129 22 C -0.148 4.148 23 O -0.161 6.161 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 8.142 -13.946 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.243 4.243 4 C -0.146 4.146 5 C -0.120 4.120 6 C 0.382 3.618 7 O -0.408 6.408 8 N -0.343 5.343 9 C -0.008 4.008 10 C 0.085 3.915 11 N -0.366 5.366 12 C -0.372 4.372 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.576 5.576 16 Si 0.711 3.289 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.186 4.186 21 C -0.167 4.167 22 C -0.186 4.186 23 O -0.057 6.057 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.171 0.829 28 H 0.177 0.823 29 H 0.236 0.764 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.528 8.140 -13.733 18.099 hybrid contribution -1.699 -0.144 0.418 1.755 sum -10.226 7.996 -13.315 18.596 Atomic orbital electron populations 1.20390 0.84770 1.04482 1.03732 1.22781 0.94268 0.84235 1.02885 1.21545 0.92418 0.99608 1.10704 1.21905 0.98507 0.93002 1.01224 1.22268 0.81832 0.94823 1.13124 1.16545 0.85844 0.81855 0.77577 1.90858 1.21969 1.76216 1.51710 1.45705 1.11275 1.04901 1.72418 1.21976 0.87429 0.89848 1.01543 1.20759 0.94169 0.90418 0.86130 1.42405 1.08822 1.83585 1.01810 1.18937 0.92900 1.42458 0.82859 0.88962 1.24670 0.97001 1.01758 0.95248 1.69694 1.34396 1.56296 0.97201 0.86615 0.87332 0.77877 0.77085 1.21127 1.21799 1.20288 1.23302 0.96512 0.98502 1.00299 1.22683 0.98030 0.96146 0.99831 1.23205 0.99129 0.97991 0.98272 1.84025 1.16138 1.34902 1.70637 0.89752 0.90139 0.89079 0.82852 0.82320 0.76360 0.92155 0.90131 0.80342 0.93006 0.90924 0.90146 0.90147 0.92410 0.91862 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 36.01 0.38 -0.20 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -2.60 10.77 -39.89 -0.43 -3.03 16 4 C -0.13 -1.79 10.62 -39.40 -0.42 -2.21 16 5 C -0.07 -1.11 7.13 -36.80 -0.26 -1.37 16 6 C 0.60 11.04 7.79 -12.87 -0.10 10.94 16 7 O -0.53 -11.15 16.87 5.19 0.09 -11.06 16 8 N -0.70 -12.25 5.43 -61.62 -0.33 -12.58 16 9 C 0.12 2.15 5.08 -4.04 -0.02 2.13 16 10 C 0.18 3.18 0.82 -131.01 -0.11 3.07 16 11 N -0.72 -15.93 4.98 -46.48 -0.23 -16.17 16 12 C -0.24 -6.51 9.52 -15.05 -0.14 -6.65 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 15 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 16 Si 0.88 21.62 27.68 -169.99 -4.70 16.92 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.28 -6.35 6.61 56.52 0.37 -5.97 16 20 C -0.15 -2.41 7.29 -25.83 -0.19 -2.60 16 21 C -0.13 -1.88 8.00 -25.83 -0.21 -2.09 16 22 C -0.15 -2.13 6.98 -25.91 -0.18 -2.31 16 23 O -0.16 -2.40 10.40 5.00 0.05 -2.34 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 28 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.40 6.63 7.99 -40.82 -0.33 6.31 16 30 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 31 H 0.08 1.76 7.80 -51.93 -0.41 1.35 16 32 H 0.36 7.90 5.80 -40.82 -0.24 7.66 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 35 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -32.68 332.23 -6.98 -39.66 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.59 Total: 12.91 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.04 Total: -4.27 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.21 Total: -56.82 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.14 Total: -13.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.70 Total: 16.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.68 -6.98 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570096367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds