Wall clock time and date at job start Tue Mar 31 2020 00:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35128 * 125.61624 * 2 1 4 4 C 1.40360 * 107.11615 * 179.73125 * 3 2 1 5 5 C 1.36538 * 106.70705 * 359.97438 * 4 3 2 6 6 C 1.46657 * 125.99083 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99537 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00342 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47501 * 175.91511 * 9 8 6 11 11 N 1.46497 * 112.85276 * 292.02692 * 10 9 8 12 12 C 1.36943 * 119.99565 * 294.78770 * 11 10 9 13 13 H 1.07994 * 120.00496 * 353.79628 * 12 11 10 14 14 C 1.38819 * 119.99589 * 173.80186 * 12 11 10 15 15 N 1.31625 * 119.99683 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00195 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47022 * 90.00249 * 16 14 12 18 18 H 1.48504 * 109.46955 * 210.00230 * 16 14 12 19 19 H 1.48496 * 109.47299 * 330.00234 * 16 14 12 20 20 C 1.53785 * 113.61654 * 160.82539 * 10 9 8 21 21 C 1.53950 * 87.02055 * 220.04966 * 20 10 9 22 22 C 1.53783 * 113.61140 * 63.21926 * 10 9 8 23 23 O 1.33924 * 125.61379 * 179.68316 * 2 1 3 24 24 H 1.08998 * 109.46918 * 90.00640 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.00180 * 1 2 3 26 26 H 1.09002 * 109.47166 * 330.00565 * 1 2 3 27 27 H 1.08007 * 126.44162 * 359.76352 * 3 2 1 28 28 H 1.07999 * 126.64282 * 179.97438 * 4 3 2 29 29 H 0.97004 * 120.00364 * 359.97438 * 8 6 5 30 30 H 1.08997 * 109.47007 * 295.91933 * 9 8 6 31 31 H 1.09006 * 109.47249 * 55.90995 * 9 8 6 32 32 H 0.96995 * 120.00167 * 114.78000 * 11 10 9 33 33 H 0.96992 * 119.99935 * 180.02562 * 15 14 12 34 34 H 1.09000 * 113.61517 * 334.57461 * 20 10 9 35 35 H 1.09005 * 113.60793 * 105.47070 * 20 10 9 36 36 H 1.08998 * 113.53920 * 270.81450 * 21 20 10 37 37 H 1.09003 * 113.66420 * 139.93292 * 21 20 10 38 38 H 1.08994 * 113.61918 * 254.52866 * 22 10 9 39 39 H 1.09001 * 113.61453 * 25.43963 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6531 0.0063 5 6 3.5823 -0.7116 0.0104 6 6 4.7414 -1.6101 0.0170 7 8 5.8680 -1.1499 0.0197 8 7 4.5590 -2.9454 0.0201 9 6 5.7168 -3.8430 0.0272 10 6 5.2381 -5.2923 0.1322 11 7 4.6293 -5.5978 1.4292 12 6 5.3898 -5.5635 2.5675 13 1 6.4567 -5.4104 2.4998 14 6 4.7892 -5.7258 3.8085 15 7 5.5202 -5.6934 4.9026 16 14 2.9438 -5.9902 3.9257 17 1 2.6475 -7.4442 3.8691 18 1 2.4444 -5.4327 5.2084 19 1 2.2724 -5.3038 2.7929 20 6 6.2898 -6.3223 -0.3126 21 6 5.1358 -7.0938 -0.9783 22 6 4.3929 -5.7503 -1.0681 23 8 2.2869 -1.0887 0.0060 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 -0.0036 28 1 4.5113 1.2704 0.0076 29 1 3.6610 -3.3123 0.0183 30 1 6.2828 -3.7132 -0.8952 31 1 6.3536 -3.6079 0.8802 32 1 3.6876 -5.8243 1.4816 33 1 5.1007 -5.8071 5.7697 34 1 7.0165 -5.9259 -1.0218 35 1 6.7539 -6.8579 0.5157 36 1 4.6556 -7.8148 -0.3168 37 1 5.3944 -7.5155 -1.9495 38 1 3.3278 -5.8249 -0.8492 39 1 4.6000 -5.1973 -1.9844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570096367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:11 Heat of formation + Delta-G solvation = -12.170140 kcal Electronic energy + Delta-G solvation = -21793.940469 eV Core-core repulsion = 18510.368479 eV Total energy + Delta-G solvation = -3283.571989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -43.72322 -40.97290 -39.85131 -35.59116 -35.28317 -34.22584 -32.96933 -32.58150 -29.66175 -27.61504 -26.72590 -25.53517 -23.69476 -22.72946 -22.58545 -21.24281 -20.02521 -19.73155 -19.24982 -17.55843 -17.18812 -16.78240 -16.45453 -16.27668 -15.86364 -15.70593 -15.18071 -14.75988 -14.56101 -14.16079 -14.04532 -14.03613 -13.97432 -13.68443 -13.23859 -13.12697 -13.00478 -12.79783 -12.60033 -12.25056 -11.82324 -11.67597 -11.62161 -11.46638 -11.06728 -10.98312 -10.84102 -10.22610 -9.47178 -9.32556 -8.02003 -5.36716 -0.01839 1.33315 1.34314 1.38735 1.45495 1.58157 2.07210 2.22903 2.47156 3.26850 3.41738 3.59702 3.72065 3.87083 3.91477 3.94263 4.02758 4.15156 4.51410 4.55843 4.59884 4.68789 4.71592 4.72880 4.82535 4.89216 4.93089 4.97471 5.10739 5.12111 5.23803 5.33982 5.40693 5.45876 5.62146 5.82685 5.85011 6.21815 6.43570 6.99516 7.07869 7.81844 8.00750 9.19675 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.005846 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.934923 B = 4788.806560 C = 5566.289097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 C -0.227 4.227 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.593 3.407 7 O -0.568 6.568 8 N -0.691 5.691 9 C 0.126 3.874 10 C 0.158 3.842 11 N -0.724 5.724 12 C -0.215 4.215 13 H 0.053 0.947 14 C -0.066 4.066 15 N -0.986 5.986 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.304 1.304 19 H -0.247 1.247 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.127 4.127 23 O -0.174 6.174 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.189 0.811 28 H 0.162 0.838 29 H 0.409 0.591 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.368 0.632 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 8.789 -16.597 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.033 4.033 3 C -0.246 4.246 4 C -0.142 4.142 5 C -0.162 4.162 6 C 0.380 3.620 7 O -0.450 6.450 8 N -0.339 5.339 9 C 0.000 4.000 10 C 0.067 3.933 11 N -0.366 5.366 12 C -0.346 4.346 13 H 0.071 0.929 14 C -0.257 4.257 15 N -0.636 5.636 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.231 1.231 19 H -0.172 1.172 20 C -0.189 4.189 21 C -0.156 4.156 22 C -0.165 4.165 23 O -0.071 6.071 24 H 0.125 0.875 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.206 0.794 28 H 0.179 0.821 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.202 0.798 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.999 8.775 -16.461 22.180 hybrid contribution -0.582 -0.245 1.171 1.331 sum -12.581 8.530 -15.290 21.560 Atomic orbital electron populations 1.20678 0.81298 1.05825 1.05558 1.23802 0.96059 0.83486 0.99906 1.21937 0.90869 1.01358 1.10404 1.22223 1.00155 0.92446 0.99364 1.21837 0.82048 0.94946 1.17346 1.16879 0.86286 0.82172 0.76646 1.90817 1.23715 1.76877 1.53622 1.45650 1.11259 1.04743 1.72227 1.21820 0.87438 0.90257 1.00450 1.21141 0.96264 0.90107 0.85811 1.42301 1.08676 1.83610 1.02019 1.18799 0.91652 1.39479 0.84641 0.92944 1.25500 1.02288 1.03029 0.94852 1.69897 1.36664 1.59294 0.97768 0.85455 0.81141 0.78201 0.77270 1.20274 1.23093 1.17152 1.23346 0.97360 0.98186 0.99967 1.22626 0.96250 0.95938 1.00799 1.23164 0.99128 0.97317 0.96882 1.84001 1.15640 1.36280 1.71143 0.87493 0.89986 0.86508 0.79416 0.82070 0.75534 0.90123 0.94901 0.79772 0.93586 0.88563 0.93678 0.91414 0.89188 0.90714 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.41 71.24 0.74 -0.07 16 2 C 0.02 0.41 7.31 24.97 0.18 0.59 16 3 C -0.23 -4.62 10.77 22.07 0.24 -4.38 16 4 C -0.12 -3.33 10.62 22.39 0.24 -3.09 16 5 C -0.11 -3.55 7.13 24.07 0.17 -3.38 16 6 C 0.59 22.39 7.79 86.44 0.67 23.06 16 7 O -0.57 -24.95 16.87 -4.35 -0.07 -25.02 16 8 N -0.69 -24.33 5.43 -467.10 -2.54 -26.87 16 9 C 0.13 4.68 5.08 86.38 0.44 5.12 16 10 C 0.16 5.52 0.82 4.13 0.00 5.53 16 11 N -0.72 -31.74 4.98 -300.96 -1.50 -33.24 16 12 C -0.21 -11.99 9.52 84.03 0.80 -11.19 16 13 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 14 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 15 N -0.99 -64.10 13.97 21.65 0.30 -63.80 16 16 Si 0.95 45.10 27.68 68.60 1.90 47.00 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 19 H -0.25 -10.35 6.61 99.48 0.66 -9.69 16 20 C -0.15 -4.80 7.29 31.18 0.23 -4.57 16 21 C -0.12 -3.10 8.00 31.18 0.25 -2.85 16 22 C -0.13 -3.22 6.98 31.12 0.22 -3.00 16 23 O -0.17 -4.88 10.40 -5.02 -0.05 -4.94 16 24 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.41 13.05 7.99 -92.71 -0.74 12.31 16 30 H 0.08 2.64 8.01 -2.39 -0.02 2.62 16 31 H 0.03 1.52 7.80 -2.38 -0.02 1.50 16 32 H 0.37 15.38 5.80 -92.71 -0.54 14.84 16 33 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.10 2.63 8.01 -2.39 -0.02 2.61 16 35 H 0.04 1.76 7.86 -2.38 -0.02 1.74 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 39 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -76.27 332.23 2.43 -73.84 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.26 Total: 34.66 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.65 Total: -1.64 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -3.73 Total: -123.90 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.13 Total: -29.96 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -76.27 2.43 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570096367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds