Wall clock time and date at job start Tue Mar 31 2020 00:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99904 * 2 1 4 4 N 1.46907 * 109.47026 * 123.45091 * 3 2 1 5 5 C 1.46903 * 110.99786 * 64.36701 * 4 3 2 6 6 C 1.50700 * 109.47014 * 66.05040 * 5 4 3 7 7 H 1.07999 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00098 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99790 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00349 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47483 * 119.99425 * 10 8 6 13 13 H 1.48497 * 109.47365 * 239.99792 * 10 8 6 14 14 C 1.46899 * 110.99979 * 300.41512 * 4 3 2 15 15 C 1.50700 * 109.46854 * 288.22137 * 14 4 3 16 16 C 1.34434 * 125.45840 * 93.89195 * 15 14 4 17 17 C 1.46748 * 106.37392 * 180.02562 * 16 15 14 18 18 C 1.47110 * 127.02203 * 179.97438 * 17 16 15 19 19 O 1.21554 * 119.99498 * 180.02562 * 18 17 16 20 20 O 1.34780 * 120.00023 * 0.03179 * 18 17 16 21 21 C 1.37846 * 105.95127 * 0.02562 * 17 16 15 22 22 C 1.50697 * 125.89424 * 179.97438 * 21 17 16 23 23 N 1.34628 * 108.20568 * 0.25969 * 21 17 16 24 24 H 0.96996 * 124.80533 * 179.72119 * 23 21 17 25 25 H 1.08002 * 119.99964 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99945 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99692 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47400 * 3.45047 * 3 2 1 29 29 H 1.08999 * 109.47373 * 243.45020 * 3 2 1 30 30 H 1.09001 * 109.47038 * 186.04109 * 5 4 3 31 31 H 1.08997 * 109.47121 * 306.04723 * 5 4 3 32 32 H 0.96999 * 119.99991 * 180.02562 * 9 8 6 33 33 H 1.08991 * 109.46890 * 168.22284 * 14 4 3 34 34 H 1.09001 * 109.46783 * 48.21868 * 14 4 3 35 35 H 1.07997 * 126.81257 * 0.02562 * 16 15 14 36 36 H 0.96705 * 116.99629 * 179.97438 * 20 18 17 37 37 H 1.08999 * 109.47294 * 89.99949 * 22 21 17 38 38 H 1.09001 * 109.47377 * 330.00207 * 22 21 17 39 39 H 1.08998 * 109.46930 * 209.99678 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9695 1.3474 1.1556 5 6 4.0024 0.3078 1.0531 6 6 4.9016 0.6070 -0.1185 7 1 4.7235 1.4816 -0.7265 8 6 5.9512 -0.2365 -0.4150 9 7 6.1679 -1.3019 0.3250 10 14 7.0655 0.1338 -1.8678 11 1 6.6119 1.3811 -2.5343 12 1 8.4609 0.3068 -1.3900 13 1 7.0093 -0.9920 -2.8345 14 6 2.2228 1.2253 2.4148 15 6 1.4570 2.4979 2.6700 16 6 0.1790 2.7228 2.3189 17 6 -0.1391 4.0841 2.7650 18 6 -1.4200 4.7907 2.6092 19 8 -1.5435 5.9246 3.0293 20 8 -2.4565 4.1807 2.0007 21 6 1.0078 4.5659 3.3589 22 6 1.1775 5.9308 3.9747 23 7 1.9520 3.6089 3.2881 24 1 2.8553 3.6959 3.6305 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3568 2.1326 0.0618 29 1 2.6430 1.3901 -0.9193 30 1 4.5929 0.2908 1.9692 31 1 3.5279 -0.6628 0.9085 32 1 6.9065 -1.8951 0.1167 33 1 2.9192 1.0496 3.2345 34 1 1.5261 0.3899 2.3444 35 1 -0.4824 2.0375 1.8096 36 1 -3.2779 4.6850 1.9220 37 1 0.9046 5.8902 5.0292 38 1 0.5337 6.6442 3.4601 39 1 2.2168 6.2453 3.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:24 Heat of formation + Delta-G solvation = -29.636444 kcal Electronic energy + Delta-G solvation = -21515.270966 eV Core-core repulsion = 18230.941581 eV Total energy + Delta-G solvation = -3284.329385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25577 -39.49092 -37.37594 -35.88068 -33.00220 -32.53894 -31.45081 -31.02271 -28.44583 -26.65782 -25.63826 -23.94101 -22.77562 -21.22258 -20.25021 -19.52820 -18.96284 -17.79280 -16.64781 -16.12094 -15.60281 -15.54752 -15.16056 -14.90538 -14.37024 -14.25782 -13.81496 -13.46263 -13.33645 -12.96083 -12.87329 -12.59167 -12.38493 -12.09834 -11.69037 -11.43647 -11.35782 -11.19047 -10.87646 -10.82047 -10.70608 -10.49939 -10.36887 -9.92335 -9.36480 -8.87663 -8.77905 -8.51416 -7.95914 -7.34382 -6.09676 -4.10918 1.55375 2.50511 2.74466 3.03498 3.26588 3.34719 3.38909 3.40677 3.56788 4.37903 4.79585 4.96080 5.11734 5.19364 5.27518 5.42249 5.48808 5.49360 5.58742 5.69312 5.82587 5.90542 5.96812 6.03802 6.12292 6.32826 6.42025 6.61380 6.62710 6.87202 7.01446 7.09837 7.13503 7.28931 7.30560 7.53513 7.72687 7.97915 8.09015 8.12272 8.43929 8.96732 9.53741 11.00975 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.004193 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.594014 B = 6676.188114 C = 7235.764895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.085 3.915 4 N -0.527 5.527 5 C 0.189 3.811 6 C -0.506 4.506 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.110 3.890 15 C 0.045 3.955 16 C -0.146 4.146 17 C -0.238 4.238 18 C 0.561 3.439 19 O -0.539 6.539 20 O -0.513 6.513 21 C 0.116 3.884 22 C -0.096 4.096 23 N -0.529 5.529 24 H 0.420 0.580 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.000 1.000 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.147 0.853 36 H 0.406 0.594 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 8.552 5.867 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.183 4.183 3 C -0.043 4.043 4 N -0.249 5.249 5 C 0.065 3.935 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.019 4.019 15 C -0.064 4.064 16 C -0.169 4.169 17 C -0.246 4.246 18 C 0.409 3.591 19 O -0.431 6.431 20 O -0.324 6.324 21 C -0.005 4.005 22 C -0.153 4.153 23 N -0.124 5.124 24 H 0.258 0.742 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.422 8.886 6.060 15.689 hybrid contribution 0.166 -0.519 -0.730 0.911 sum -11.257 8.367 5.329 15.004 Atomic orbital electron populations 1.23744 0.95951 1.00967 1.04145 1.23868 0.96243 1.01332 0.96816 1.21315 0.94334 0.92715 0.95961 1.62421 1.12220 1.51260 0.99049 1.19806 0.88233 0.87608 0.97875 1.21162 1.11742 1.09240 1.12338 0.91832 1.24964 0.97627 0.95021 0.96865 1.69960 1.30717 1.13931 1.39165 0.86470 0.80461 0.78292 0.82392 1.19653 1.21047 1.21084 1.20626 0.96037 0.90349 0.94890 1.20374 0.94080 0.90172 1.01821 1.21824 0.95115 0.95048 1.04934 1.19180 0.91762 0.97379 1.16295 1.19871 0.83140 0.83109 0.73024 1.90823 1.83719 1.19511 1.49083 1.84626 1.23971 1.50226 1.73528 1.20467 0.88122 0.91861 1.00039 1.20580 1.03071 0.90587 1.01050 1.41557 1.13103 1.11714 1.45989 0.74249 0.89443 0.88882 0.87156 0.91716 0.89143 0.95385 0.98246 0.92952 0.90650 0.92375 0.83499 0.73662 0.90401 0.88418 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.06 14.03 29.01 0.41 -2.65 16 2 C -0.16 -2.81 7.40 -36.03 -0.27 -3.08 16 3 C 0.08 1.57 5.46 -4.98 -0.03 1.54 16 4 N -0.53 -10.41 4.65 -238.97 -1.11 -11.52 16 5 C 0.19 4.56 4.56 -4.97 -0.02 4.54 16 6 C -0.51 -13.50 8.45 -34.44 -0.29 -13.79 16 7 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.11 1.82 5.35 -4.98 -0.03 1.79 16 15 C 0.05 0.68 6.09 -81.89 -0.50 0.18 16 16 C -0.15 -2.16 9.90 -37.49 -0.37 -2.53 16 17 C -0.24 -3.47 6.33 -103.00 -0.65 -4.12 16 18 C 0.56 7.85 8.32 34.33 0.29 8.14 16 19 O -0.54 -8.25 15.66 -19.31 -0.30 -8.55 16 20 O -0.51 -5.79 13.33 -40.71 -0.54 -6.34 16 21 C 0.12 1.51 7.22 -81.51 -0.59 0.92 16 22 C -0.10 -0.99 9.90 36.00 0.36 -0.63 16 23 N -0.53 -6.89 5.89 -5.20 -0.03 -6.92 16 24 H 0.42 4.58 8.96 -40.82 -0.37 4.22 16 25 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 26 H 0.09 1.27 6.89 -52.49 -0.36 0.91 16 27 H 0.11 2.12 6.83 -52.48 -0.36 1.76 16 28 H 0.06 1.13 6.38 -51.93 -0.33 0.80 16 29 H 0.09 1.86 6.75 -51.93 -0.35 1.51 16 30 H 0.03 0.72 7.86 -51.93 -0.41 0.32 16 31 H 0.00 -0.01 6.36 -51.93 -0.33 -0.34 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.08 1.21 7.81 -51.93 -0.41 0.81 16 34 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 35 H 0.15 2.10 6.79 -52.49 -0.36 1.75 16 36 H 0.41 2.54 9.11 45.56 0.42 2.96 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -31.19 328.89 -7.42 -38.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.32 Total: 6.91 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.79 Total: -8.24 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.41 Total: -43.40 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.85 Total: -14.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.19 -7.42 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.973 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds