Wall clock time and date at job start Tue Mar 31 2020 00:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99904 * 2 1 4 4 N 1.46907 * 109.47026 * 123.45091 * 3 2 1 5 5 C 1.46903 * 110.99786 * 64.36701 * 4 3 2 6 6 C 1.50700 * 109.47014 * 66.05040 * 5 4 3 7 7 H 1.07999 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00098 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99790 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00349 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47483 * 119.99425 * 10 8 6 13 13 H 1.48497 * 109.47365 * 239.99792 * 10 8 6 14 14 C 1.46899 * 110.99979 * 300.41512 * 4 3 2 15 15 C 1.50700 * 109.46854 * 288.22137 * 14 4 3 16 16 C 1.34434 * 125.45840 * 93.89195 * 15 14 4 17 17 C 1.46748 * 106.37392 * 180.02562 * 16 15 14 18 18 C 1.47110 * 127.02203 * 179.97438 * 17 16 15 19 19 O 1.21554 * 119.99498 * 180.02562 * 18 17 16 20 20 O 1.34780 * 120.00023 * 0.03179 * 18 17 16 21 21 C 1.37846 * 105.95127 * 0.02562 * 17 16 15 22 22 C 1.50697 * 125.89424 * 179.97438 * 21 17 16 23 23 N 1.34628 * 108.20568 * 0.25969 * 21 17 16 24 24 H 0.96996 * 124.80533 * 179.72119 * 23 21 17 25 25 H 1.08002 * 119.99964 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99945 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99692 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47400 * 3.45047 * 3 2 1 29 29 H 1.08999 * 109.47373 * 243.45020 * 3 2 1 30 30 H 1.09001 * 109.47038 * 186.04109 * 5 4 3 31 31 H 1.08997 * 109.47121 * 306.04723 * 5 4 3 32 32 H 0.96999 * 119.99991 * 180.02562 * 9 8 6 33 33 H 1.08991 * 109.46890 * 168.22284 * 14 4 3 34 34 H 1.09001 * 109.46783 * 48.21868 * 14 4 3 35 35 H 1.07997 * 126.81257 * 0.02562 * 16 15 14 36 36 H 0.96705 * 116.99629 * 179.97438 * 20 18 17 37 37 H 1.08999 * 109.47294 * 89.99949 * 22 21 17 38 38 H 1.09001 * 109.47377 * 330.00207 * 22 21 17 39 39 H 1.08998 * 109.46930 * 209.99678 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9695 1.3474 1.1556 5 6 4.0024 0.3078 1.0531 6 6 4.9016 0.6070 -0.1185 7 1 4.7235 1.4816 -0.7265 8 6 5.9512 -0.2365 -0.4150 9 7 6.1679 -1.3019 0.3250 10 14 7.0655 0.1338 -1.8678 11 1 6.6119 1.3811 -2.5343 12 1 8.4609 0.3068 -1.3900 13 1 7.0093 -0.9920 -2.8345 14 6 2.2228 1.2253 2.4148 15 6 1.4570 2.4979 2.6700 16 6 0.1790 2.7228 2.3189 17 6 -0.1391 4.0841 2.7650 18 6 -1.4200 4.7907 2.6092 19 8 -1.5435 5.9246 3.0293 20 8 -2.4565 4.1807 2.0007 21 6 1.0078 4.5659 3.3589 22 6 1.1775 5.9308 3.9747 23 7 1.9520 3.6089 3.2881 24 1 2.8553 3.6959 3.6305 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3568 2.1326 0.0618 29 1 2.6430 1.3901 -0.9193 30 1 4.5929 0.2908 1.9692 31 1 3.5279 -0.6628 0.9085 32 1 6.9065 -1.8951 0.1167 33 1 2.9192 1.0496 3.2345 34 1 1.5261 0.3899 2.3444 35 1 -0.4824 2.0375 1.8096 36 1 -3.2779 4.6850 1.9220 37 1 0.9046 5.8902 5.0292 38 1 0.5337 6.6442 3.4601 39 1 2.2168 6.2453 3.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:23 Heat of formation + Delta-G solvation = -51.123752 kcal Electronic energy + Delta-G solvation = -21516.202726 eV Core-core repulsion = 18230.941581 eV Total energy + Delta-G solvation = -3285.261145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.33760 -40.51417 -38.89168 -36.86085 -34.91841 -33.88993 -32.70904 -32.10164 -29.88111 -28.28632 -26.92505 -25.42142 -24.04173 -22.75071 -21.38240 -20.55959 -20.40863 -18.82232 -18.41167 -17.50611 -16.89551 -16.61223 -16.56848 -16.42438 -15.84638 -15.58131 -15.11900 -14.76401 -14.49928 -14.29333 -13.98547 -13.79895 -13.60843 -13.38853 -13.23371 -12.83290 -12.68849 -12.61245 -12.41367 -12.37721 -12.22477 -12.13880 -11.74469 -11.44675 -11.28985 -10.61236 -10.22214 -9.87275 -9.13946 -8.91019 -8.18546 -6.26909 0.52275 1.32764 1.40279 1.42366 1.46751 1.54423 2.06484 2.32961 2.41718 2.60209 3.14778 3.49340 3.82738 3.99378 4.08802 4.20193 4.31658 4.38029 4.51564 4.65168 4.67022 4.72721 4.74607 4.89358 5.02341 5.08356 5.12450 5.25406 5.32556 5.37182 5.64944 5.73508 5.77452 5.80477 5.86744 6.00807 6.10050 6.34081 6.53423 6.64057 6.89077 7.21647 7.42277 8.91897 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.004193 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.594014 B = 6676.188114 C = 7235.764895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.192 4.192 3 C 0.093 3.907 4 N -0.531 5.531 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.117 3.883 15 C 0.032 3.968 16 C -0.144 4.144 17 C -0.264 4.264 18 C 0.563 3.437 19 O -0.558 6.558 20 O -0.510 6.510 21 C 0.126 3.874 22 C -0.093 4.093 23 N -0.524 5.524 24 H 0.429 0.571 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.005 0.995 31 H -0.022 1.022 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.151 0.849 36 H 0.427 0.573 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 9.765 5.724 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.212 4.212 3 C -0.034 4.034 4 N -0.254 5.254 5 C 0.081 3.919 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.207 1.207 14 C -0.012 4.012 15 C -0.078 4.078 16 C -0.167 4.167 17 C -0.272 4.272 18 C 0.411 3.589 19 O -0.452 6.452 20 O -0.323 6.323 21 C 0.005 3.995 22 C -0.150 4.150 23 N -0.120 5.120 24 H 0.268 0.732 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.023 0.977 31 H -0.004 1.004 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.288 0.712 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.522 10.107 5.913 17.144 hybrid contribution 0.356 -0.877 -0.655 1.151 sum -12.166 9.230 5.259 16.151 Atomic orbital electron populations 1.23958 0.94727 1.02650 0.99503 1.23518 0.97117 0.99461 1.01116 1.21173 0.93983 0.94050 0.94236 1.62300 1.12763 1.49333 1.01004 1.19414 0.88813 0.87850 0.95867 1.21455 1.12203 1.08930 1.12931 0.92308 1.25771 0.99125 0.94837 0.99450 1.70070 1.31479 1.14911 1.40854 0.85458 0.78503 0.78245 0.79163 1.19027 1.20532 1.20672 1.20520 0.95845 0.91634 0.93168 1.20040 0.94166 0.90185 1.03417 1.21914 0.94984 0.95349 1.04500 1.19436 0.92795 0.97541 1.17477 1.19786 0.83461 0.82763 0.72861 1.90814 1.84141 1.20182 1.50048 1.84570 1.24626 1.50415 1.72719 1.20924 0.87519 0.92488 0.98605 1.20649 1.04286 0.88583 1.01457 1.41551 1.13650 1.11202 1.45581 0.73168 0.87510 0.87154 0.89875 0.90173 0.91873 0.97674 1.00421 0.92815 0.90707 0.92245 0.83094 0.71175 0.88891 0.89423 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 14.03 67.78 0.95 -3.64 16 2 C -0.19 -6.62 7.40 25.64 0.19 -6.43 16 3 C 0.09 3.48 5.46 85.55 0.47 3.95 16 4 N -0.53 -21.33 4.65 -909.96 -4.23 -25.56 16 5 C 0.21 10.32 4.56 85.56 0.39 10.71 16 6 C -0.52 -28.20 8.45 25.60 0.22 -27.98 16 7 H 0.06 3.20 7.13 -2.91 -0.02 3.18 16 8 C 0.01 0.34 5.46 84.65 0.46 0.81 16 9 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 10 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.12 3.85 5.35 85.56 0.46 4.31 16 15 C 0.03 0.91 6.09 40.97 0.25 1.16 16 16 C -0.14 -4.02 9.90 23.63 0.23 -3.79 16 17 C -0.26 -7.24 6.33 -18.82 -0.12 -7.36 16 18 C 0.56 14.73 8.32 70.15 0.58 15.31 16 19 O -0.56 -16.17 15.66 19.66 0.31 -15.86 16 20 O -0.51 -10.34 13.33 -56.91 -0.76 -11.09 16 21 C 0.13 3.06 7.22 42.04 0.30 3.36 16 22 C -0.09 -1.70 9.90 71.23 0.71 -0.99 16 23 N -0.52 -12.87 5.89 -170.37 -1.00 -13.87 16 24 H 0.43 8.74 8.96 -92.71 -0.83 7.91 16 25 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 26 H 0.11 2.64 6.89 -2.91 -0.02 2.62 16 27 H 0.08 3.33 6.83 -2.91 -0.02 3.31 16 28 H 0.08 2.71 6.38 -2.39 -0.02 2.70 16 29 H 0.06 2.66 6.75 -2.39 -0.02 2.65 16 30 H 0.01 0.28 7.86 -2.39 -0.02 0.26 16 31 H -0.02 -1.18 6.36 -2.39 -0.02 -1.19 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.07 2.44 7.81 -2.39 -0.02 2.42 16 34 H 0.06 1.95 6.70 -2.39 -0.02 1.93 16 35 H 0.15 3.98 6.79 -2.91 -0.02 3.96 16 36 H 0.43 4.29 9.11 -74.05 -0.67 3.62 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.86 6.51 -2.39 -0.02 1.84 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.24 328.89 1.30 -65.94 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.41 Total: 19.66 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.09 Total: -10.60 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.95 Total: -93.62 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.45 Total: -26.96 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.24 1.30 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.815 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds