Wall clock time and date at job start Tue Mar 31 2020 00:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37851 * 125.89476 * 2 1 4 4 C 1.47101 * 127.02322 * 0.07767 * 3 2 1 5 5 O 1.21552 * 120.00236 * 359.97438 * 4 3 2 6 6 O 1.34792 * 119.99927 * 179.97438 * 4 3 2 7 7 C 1.46742 * 105.95109 * 180.02562 * 3 2 1 8 8 C 1.34434 * 106.37331 * 0.02562 * 7 3 2 9 9 C 1.50706 * 125.45516 * 179.97438 * 8 7 3 10 10 N 1.46902 * 109.46577 * 95.02495 * 9 8 7 11 11 C 1.47481 * 111.00304 * 265.96699 * 10 9 8 12 12 C 1.53510 * 87.93343 * 221.30179 * 11 10 9 13 13 C 1.50700 * 114.33950 * 139.68842 * 12 11 10 14 14 H 1.08003 * 120.00006 * 266.06711 * 13 12 11 15 15 C 1.37872 * 120.00270 * 86.07627 * 13 12 11 16 16 N 1.31518 * 120.00257 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00049 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47160 * 90.00201 * 17 15 13 19 19 H 1.48504 * 109.47162 * 210.00134 * 17 15 13 20 20 H 1.48497 * 109.47152 * 330.00275 * 17 15 13 21 21 C 1.47479 * 110.99664 * 170.00012 * 10 9 8 22 22 N 1.34625 * 125.90141 * 180.35607 * 2 1 3 23 23 C 1.46503 * 124.80495 * 359.95794 * 22 2 1 24 24 H 1.09004 * 109.46998 * 89.97396 * 1 2 3 25 25 H 1.08992 * 109.46903 * 209.97070 * 1 2 3 26 26 H 1.08995 * 109.47026 * 329.97206 * 1 2 3 27 27 H 0.96701 * 116.99710 * 179.97438 * 6 4 3 28 28 H 1.08002 * 126.81036 * 180.02562 * 7 3 2 29 29 H 1.09000 * 109.47318 * 215.02002 * 9 8 7 30 30 H 1.09000 * 109.47161 * 335.02633 * 9 8 7 31 31 H 1.08996 * 113.47284 * 336.06998 * 11 10 9 32 32 H 1.08997 * 113.47252 * 106.53050 * 11 10 9 33 33 H 1.08998 * 114.16604 * 272.37530 * 12 11 10 34 34 H 0.96990 * 120.00428 * 179.97438 * 16 15 13 35 35 H 1.09000 * 113.47874 * 253.46965 * 21 10 9 36 36 H 1.09005 * 113.47821 * 23.87729 * 21 10 9 37 37 H 1.09005 * 109.47240 * 270.20814 * 23 22 2 38 38 H 1.08996 * 109.47260 * 30.21185 * 23 22 2 39 39 H 1.09006 * 109.46955 * 150.21392 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5228 0.0016 5 8 0.6984 2.7946 0.0026 6 8 2.8010 3.5100 0.0019 7 6 3.6946 0.6162 -0.0006 8 6 3.6109 -0.7255 -0.0015 9 6 4.7817 -1.6745 -0.0030 10 7 5.0865 -2.0780 1.3763 11 6 6.1304 -1.2156 1.9608 12 6 6.7477 -2.4774 2.5801 13 6 8.2535 -2.5185 2.5351 14 1 8.7559 -3.0155 1.7183 15 6 8.9897 -1.9219 3.5365 16 7 10.3038 -1.9582 3.4974 17 14 8.1208 -1.0620 4.9489 18 1 7.8789 -2.0331 6.0460 19 1 8.9696 0.0490 5.4494 20 1 6.8231 -0.5182 4.4741 21 6 6.0640 -3.1820 1.4001 22 7 2.2964 -1.0905 -0.0068 23 6 1.8124 -2.4732 -0.0145 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 2.4689 4.4182 0.0026 28 1 4.5979 1.2083 -0.0004 29 1 4.5337 -2.5567 -0.5932 30 1 5.6503 -1.1793 -0.4371 31 1 6.7687 -0.7408 1.2158 32 1 5.7483 -0.5115 2.6998 33 1 6.3389 -2.7416 3.5554 34 1 10.8218 -1.5382 4.2017 35 1 5.6257 -4.1445 1.6640 36 1 6.6840 -3.2326 0.5049 37 1 1.6894 -2.8209 1.0113 38 1 0.8539 -2.5197 -0.5313 39 1 2.5339 -3.1079 -0.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599986534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:56 Heat of formation + Delta-G solvation = -9.665980 kcal Electronic energy + Delta-G solvation = -21510.592801 eV Core-core repulsion = 18227.129400 eV Total energy + Delta-G solvation = -3283.463401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49465 -39.60379 -39.03005 -35.91803 -33.10095 -32.86620 -32.17344 -29.99580 -27.30918 -26.94599 -25.13183 -24.90127 -23.04174 -21.86737 -20.47258 -18.72722 -18.58112 -17.84712 -17.11657 -16.55957 -15.94638 -15.47290 -15.26905 -14.94259 -14.60296 -14.32974 -13.65580 -13.43036 -13.28428 -13.23544 -12.95589 -12.70873 -12.50087 -12.43835 -11.99870 -11.94847 -11.73651 -11.44256 -11.22122 -11.07017 -10.49906 -10.33710 -10.01485 -9.98362 -9.64701 -9.17787 -8.64561 -8.59499 -8.27494 -7.99049 -6.13526 -4.14555 1.48421 2.38689 2.66590 3.28605 3.34840 3.37685 3.42994 3.43100 4.40177 4.57272 4.64527 4.69398 4.89933 5.00861 5.06019 5.14373 5.23930 5.31572 5.41801 5.52736 5.62641 5.68323 5.81276 5.84258 5.91134 6.07245 6.20177 6.28248 6.35110 6.42668 6.58894 6.74659 6.77078 6.87857 7.12843 7.19834 7.29890 7.63605 7.76064 8.09375 8.44708 8.88925 9.49493 10.98858 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.004461 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.245769 B = 6274.571494 C = 7080.930351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 C -0.236 4.236 4 C 0.562 3.438 5 O -0.539 6.539 6 O -0.512 6.512 7 C -0.138 4.138 8 C 0.037 3.963 9 C 0.083 3.917 10 N -0.482 5.482 11 C -0.007 4.007 12 C 0.001 3.999 13 C -0.513 4.513 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.257 1.257 21 C 0.008 3.992 22 N -0.424 5.424 23 C 0.069 3.931 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.407 0.593 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.945 2.964 -8.536 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.245 4.245 4 C 0.409 3.591 5 O -0.432 6.432 6 O -0.322 6.322 7 C -0.162 4.162 8 C -0.071 4.071 9 C -0.046 4.046 10 N -0.205 5.205 11 C -0.136 4.136 12 C -0.019 4.019 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.127 4.127 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.181 1.181 21 C -0.120 4.120 22 N -0.099 5.099 23 C -0.072 4.072 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.264 0.736 28 H 0.167 0.833 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.665 2.249 -8.161 20.495 hybrid contribution 0.280 1.225 0.297 1.291 sum -18.386 3.473 -7.864 20.296 Atomic orbital electron populations 1.20560 0.87023 1.04212 1.03261 1.20443 0.93368 0.85022 1.01750 1.19161 0.93881 0.88343 1.23086 1.19830 0.82667 0.85404 0.71164 1.90818 1.18460 1.84732 1.49148 1.84634 1.42208 1.19255 1.86128 1.21817 0.95648 0.92431 1.06287 1.20150 0.83699 0.94408 1.08808 1.21187 0.93411 0.96196 0.93806 1.68906 1.31034 1.07072 1.13452 1.24437 0.91402 0.98547 0.99171 1.20496 0.96151 0.91404 0.93822 1.20897 0.88034 1.36358 1.09759 0.90779 1.24999 0.94599 0.95370 0.97765 1.69903 1.05175 1.44348 1.34101 0.86890 0.80541 0.79689 0.82721 1.20335 1.21443 1.18073 1.23821 0.92736 0.95019 1.00444 1.43414 1.05626 1.06139 1.54736 1.22090 1.00964 0.80033 1.04122 0.90456 0.91514 0.88367 0.73568 0.83349 0.90993 0.91221 0.91484 0.91762 0.92656 0.92544 0.91552 0.91915 0.90056 0.89974 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.28 36.01 0.33 -0.61 16 2 C 0.11 1.50 6.93 -81.51 -0.56 0.93 16 3 C -0.24 -3.55 6.33 -103.01 -0.65 -4.20 16 4 C 0.56 8.10 8.32 34.33 0.29 8.39 16 5 O -0.54 -8.37 15.66 -19.31 -0.30 -8.68 16 6 O -0.51 -6.13 13.33 -40.74 -0.54 -6.67 16 7 C -0.14 -2.13 10.89 -37.49 -0.41 -2.54 16 8 C 0.04 0.55 6.43 -81.89 -0.53 0.02 16 9 C 0.08 1.24 4.91 -4.97 -0.02 1.21 16 10 N -0.48 -8.59 6.32 -246.12 -1.55 -10.15 16 11 C -0.01 -0.14 6.70 -7.56 -0.05 -0.19 16 12 C 0.00 0.02 2.95 -91.25 -0.27 -0.25 16 13 C -0.51 -13.79 9.38 -34.44 -0.32 -14.11 16 14 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 17 Si 0.87 21.08 27.14 -169.99 -4.61 16.46 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -5.94 5.68 56.52 0.32 -5.61 16 21 C 0.01 0.15 7.24 -7.56 -0.05 0.10 16 22 N -0.42 -5.44 3.08 -114.99 -0.35 -5.79 16 23 C 0.07 0.62 10.39 59.85 0.62 1.25 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.53 7.60 -51.93 -0.39 0.14 16 26 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16 27 H 0.41 2.79 9.11 45.56 0.42 3.21 16 28 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.07 0.93 7.02 -51.93 -0.36 0.56 16 30 H 0.07 1.05 7.30 -51.93 -0.38 0.68 16 31 H 0.07 1.39 7.38 -51.93 -0.38 1.01 16 32 H 0.06 1.38 7.11 -51.93 -0.37 1.01 16 33 H 0.06 1.28 7.04 -51.93 -0.37 0.91 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.16 7.87 -51.93 -0.41 0.75 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.52 7.51 -51.93 -0.39 0.13 16 39 H 0.09 0.73 6.98 -51.93 -0.36 0.37 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -32.75 324.88 -8.10 -40.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.67 Total: 3.06 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.73 Total: -7.99 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -1.14 Total: -41.92 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.85 Total: -15.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.61 Total: 16.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.75 -8.10 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.183 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds