Wall clock time and date at job start Tue Mar 31 2020 00:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37851 * 125.89476 * 2 1 4 4 C 1.47101 * 127.02322 * 0.07767 * 3 2 1 5 5 O 1.21552 * 120.00236 * 359.97438 * 4 3 2 6 6 O 1.34792 * 119.99927 * 179.97438 * 4 3 2 7 7 C 1.46742 * 105.95109 * 180.02562 * 3 2 1 8 8 C 1.34434 * 106.37331 * 0.02562 * 7 3 2 9 9 C 1.50706 * 125.45516 * 179.97438 * 8 7 3 10 10 N 1.46902 * 109.46577 * 95.02495 * 9 8 7 11 11 C 1.47481 * 111.00304 * 265.96699 * 10 9 8 12 12 C 1.53510 * 87.93343 * 221.30179 * 11 10 9 13 13 C 1.50700 * 114.33950 * 139.68842 * 12 11 10 14 14 H 1.08003 * 120.00006 * 266.06711 * 13 12 11 15 15 C 1.37872 * 120.00270 * 86.07627 * 13 12 11 16 16 N 1.31518 * 120.00257 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00049 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47160 * 90.00201 * 17 15 13 19 19 H 1.48504 * 109.47162 * 210.00134 * 17 15 13 20 20 H 1.48497 * 109.47152 * 330.00275 * 17 15 13 21 21 C 1.47479 * 110.99664 * 170.00012 * 10 9 8 22 22 N 1.34625 * 125.90141 * 180.35607 * 2 1 3 23 23 C 1.46503 * 124.80495 * 359.95794 * 22 2 1 24 24 H 1.09004 * 109.46998 * 89.97396 * 1 2 3 25 25 H 1.08992 * 109.46903 * 209.97070 * 1 2 3 26 26 H 1.08995 * 109.47026 * 329.97206 * 1 2 3 27 27 H 0.96701 * 116.99710 * 179.97438 * 6 4 3 28 28 H 1.08002 * 126.81036 * 180.02562 * 7 3 2 29 29 H 1.09000 * 109.47318 * 215.02002 * 9 8 7 30 30 H 1.09000 * 109.47161 * 335.02633 * 9 8 7 31 31 H 1.08996 * 113.47284 * 336.06998 * 11 10 9 32 32 H 1.08997 * 113.47252 * 106.53050 * 11 10 9 33 33 H 1.08998 * 114.16604 * 272.37530 * 12 11 10 34 34 H 0.96990 * 120.00428 * 179.97438 * 16 15 13 35 35 H 1.09000 * 113.47874 * 253.46965 * 21 10 9 36 36 H 1.09005 * 113.47821 * 23.87729 * 21 10 9 37 37 H 1.09005 * 109.47240 * 270.20814 * 23 22 2 38 38 H 1.08996 * 109.47260 * 30.21185 * 23 22 2 39 39 H 1.09006 * 109.46955 * 150.21392 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5228 0.0016 5 8 0.6984 2.7946 0.0026 6 8 2.8010 3.5100 0.0019 7 6 3.6946 0.6162 -0.0006 8 6 3.6109 -0.7255 -0.0015 9 6 4.7817 -1.6745 -0.0030 10 7 5.0865 -2.0780 1.3763 11 6 6.1304 -1.2156 1.9608 12 6 6.7477 -2.4774 2.5801 13 6 8.2535 -2.5185 2.5351 14 1 8.7559 -3.0155 1.7183 15 6 8.9897 -1.9219 3.5365 16 7 10.3038 -1.9582 3.4974 17 14 8.1208 -1.0620 4.9489 18 1 7.8789 -2.0331 6.0460 19 1 8.9696 0.0490 5.4494 20 1 6.8231 -0.5182 4.4741 21 6 6.0640 -3.1820 1.4001 22 7 2.2964 -1.0905 -0.0068 23 6 1.8124 -2.4732 -0.0145 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 2.4689 4.4182 0.0026 28 1 4.5979 1.2083 -0.0004 29 1 4.5337 -2.5567 -0.5932 30 1 5.6503 -1.1793 -0.4371 31 1 6.7687 -0.7408 1.2158 32 1 5.7483 -0.5115 2.6998 33 1 6.3389 -2.7416 3.5554 34 1 10.8218 -1.5382 4.2017 35 1 5.6257 -4.1445 1.6640 36 1 6.6840 -3.2326 0.5049 37 1 1.6894 -2.8209 1.0113 38 1 0.8539 -2.5197 -0.5313 39 1 2.5339 -3.1079 -0.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599986534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:56 Heat of formation + Delta-G solvation = -33.514037 kcal Electronic energy + Delta-G solvation = -21511.626931 eV Core-core repulsion = 18227.129400 eV Total energy + Delta-G solvation = -3284.497530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51908 -40.78497 -40.43036 -36.93853 -34.87569 -33.83410 -33.56913 -31.31391 -28.64362 -27.96779 -26.69838 -26.25592 -24.30214 -23.17088 -21.52687 -20.40458 -19.63406 -19.07569 -18.87861 -17.67433 -17.08920 -16.63022 -16.48701 -16.22443 -16.07665 -15.50451 -15.24260 -14.77501 -14.62166 -14.31547 -13.97778 -13.93498 -13.70440 -13.43355 -13.23673 -13.02745 -12.91622 -12.85170 -12.58008 -12.46138 -12.02127 -11.83405 -11.70993 -11.48908 -11.42182 -11.08682 -10.64119 -9.81193 -9.66885 -9.07904 -8.28809 -6.33115 0.45786 1.27723 1.37031 1.41026 1.52426 1.76008 2.26958 2.37613 2.49822 3.05208 3.30223 3.68073 3.75847 3.96130 4.02433 4.11917 4.19668 4.34165 4.40824 4.55406 4.57489 4.63837 4.67084 4.69432 4.72362 4.78185 4.87513 4.92735 5.02699 5.06450 5.21295 5.39434 5.48721 5.64425 5.66775 5.73114 6.06911 6.19438 6.28455 6.30773 6.73208 7.15284 7.34179 8.87124 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.004461 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.245769 B = 6274.571494 C = 7080.930351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.121 3.879 3 C -0.270 4.270 4 C 0.561 3.439 5 O -0.557 6.557 6 O -0.514 6.514 7 C -0.156 4.156 8 C 0.027 3.973 9 C 0.087 3.913 10 N -0.472 5.472 11 C 0.002 3.998 12 C -0.017 4.017 13 C -0.511 4.511 14 H 0.039 0.961 15 C 0.019 3.981 16 N -0.947 5.947 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.241 1.241 21 C 0.021 3.979 22 N -0.421 5.421 23 C 0.060 3.940 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.427 0.573 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 2.425 -8.748 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 C -0.278 4.278 4 C 0.410 3.590 5 O -0.451 6.451 6 O -0.327 6.327 7 C -0.180 4.180 8 C -0.082 4.082 9 C -0.042 4.042 10 N -0.194 5.194 11 C -0.127 4.127 12 C -0.036 4.036 13 C -0.549 4.549 14 H 0.057 0.943 15 C -0.179 4.179 16 N -0.587 5.587 17 Si 0.761 3.239 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.164 1.164 21 C -0.107 4.107 22 N -0.096 5.096 23 C -0.080 4.080 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.288 0.712 28 H 0.159 0.841 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.466 1.705 -8.387 23.109 hybrid contribution 1.149 1.363 0.268 1.803 sum -20.317 3.068 -8.119 22.093 Atomic orbital electron populations 1.20629 0.84757 1.04813 1.04461 1.20937 0.94695 0.84640 0.99645 1.19452 0.94092 0.89313 1.24921 1.19844 0.82588 0.85750 0.70856 1.90801 1.18982 1.85066 1.50232 1.84593 1.41938 1.20485 1.85643 1.21910 0.95921 0.93141 1.07043 1.20039 0.84633 0.94015 1.09503 1.21167 0.93497 0.97388 0.92146 1.68840 1.29382 1.05675 1.15517 1.24179 0.91973 0.97605 0.98941 1.20506 0.93420 0.94149 0.95522 1.21153 0.90572 1.34909 1.08273 0.94314 1.25819 0.95074 0.96390 1.00604 1.70041 1.06919 1.46327 1.35444 0.85894 0.79881 0.78570 0.79553 1.19568 1.21636 1.16448 1.23679 0.92475 0.96009 0.98563 1.43643 1.04794 1.07520 1.53625 1.22424 1.02721 0.77917 1.04921 0.88821 0.88828 0.89783 0.71216 0.84128 0.88288 0.91685 0.92223 0.92440 0.92667 0.92531 0.89352 0.91908 0.89798 0.86922 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.28 71.24 0.66 -0.89 16 2 C 0.12 2.93 6.93 42.04 0.29 3.22 16 3 C -0.27 -7.82 6.33 -18.82 -0.12 -7.94 16 4 C 0.56 15.81 8.32 70.15 0.58 16.40 16 5 O -0.56 -16.82 15.66 19.67 0.31 -16.52 16 6 O -0.51 -11.96 13.33 -57.04 -0.76 -12.72 16 7 C -0.16 -4.72 10.89 23.62 0.26 -4.47 16 8 C 0.03 0.73 6.43 40.98 0.26 1.00 16 9 C 0.09 2.39 4.91 85.56 0.42 2.81 16 10 N -0.47 -15.73 6.32 -932.58 -5.89 -21.62 16 11 C 0.00 0.09 6.70 83.57 0.56 0.65 16 12 C -0.02 -0.73 2.95 -11.20 -0.03 -0.76 16 13 C -0.51 -27.88 9.38 25.60 0.24 -27.64 16 14 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 15 C 0.02 1.07 5.47 84.65 0.46 1.53 16 16 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 17 Si 0.94 43.58 27.14 68.60 1.86 45.44 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.24 -10.51 5.68 99.48 0.56 -9.94 16 21 C 0.02 0.75 7.24 83.57 0.61 1.35 16 22 N -0.42 -9.59 3.08 -517.73 -1.60 -11.19 16 23 C 0.06 0.84 10.39 127.77 1.33 2.16 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.11 7.60 -2.39 -0.02 1.09 16 26 H 0.08 1.76 6.51 -2.39 -0.02 1.74 16 27 H 0.43 5.44 9.11 -74.06 -0.67 4.77 16 28 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.10 2.21 7.02 -2.39 -0.02 2.19 16 30 H 0.06 1.88 7.30 -2.39 -0.02 1.86 16 31 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 32 H 0.06 2.38 7.11 -2.39 -0.02 2.36 16 33 H 0.06 2.46 7.04 -2.39 -0.02 2.44 16 34 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 2.22 7.87 -2.38 -0.02 2.21 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.11 0.89 7.51 -2.39 -0.02 0.87 16 39 H 0.10 1.20 6.98 -2.38 -0.02 1.18 16 Total: -1.00 -71.58 324.88 0.00 -71.59 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.26 Total: 15.25 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 5.52 Total: -12.57 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -7.19 Total: -90.48 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.45 Total: -29.23 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.86 Total: 45.44 kcal Total: -71.58 0.00 -71.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.071 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds