Wall clock time and date at job start Tue Mar 31 2020 00:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37843 * 125.89574 * 2 1 4 4 C 1.47101 * 127.02314 * 359.97438 * 3 2 1 5 5 O 1.21552 * 120.00299 * 359.97438 * 4 3 2 6 6 O 1.34791 * 119.99633 * 180.02562 * 4 3 2 7 7 C 1.46753 * 105.94972 * 179.72837 * 3 2 1 8 8 C 1.34438 * 106.37242 * 0.39538 * 7 3 2 9 9 C 1.50695 * 125.45610 * 179.86768 * 8 7 3 10 10 N 1.46494 * 109.47443 * 94.69184 * 9 8 7 11 11 C 1.36929 * 120.00176 * 90.00250 * 10 9 8 12 12 H 1.08004 * 120.00398 * 216.97969 * 11 10 9 13 13 C 1.38819 * 120.00035 * 36.96922 * 11 10 9 14 14 N 1.31617 * 119.99755 * 19.49063 * 13 11 10 15 15 Si 1.86800 * 119.99993 * 199.49052 * 13 11 10 16 16 H 1.48501 * 109.46936 * 270.00163 * 15 13 11 17 17 H 1.48502 * 109.47277 * 29.99780 * 15 13 11 18 18 H 1.48502 * 109.47105 * 150.00072 * 15 13 11 19 19 C 1.46505 * 120.00024 * 269.99883 * 10 9 8 20 20 C 1.52996 * 117.49852 * 193.94234 * 19 10 9 21 21 C 1.53004 * 60.00258 * 252.51329 * 20 19 10 22 22 N 1.34625 * 125.89475 * 179.97438 * 2 1 3 23 23 C 1.46500 * 124.81506 * 0.04996 * 22 2 1 24 24 H 1.09003 * 109.47097 * 270.03541 * 1 2 3 25 25 H 1.09000 * 109.47356 * 30.04121 * 1 2 3 26 26 H 1.09004 * 109.47047 * 150.04167 * 1 2 3 27 27 H 0.96705 * 116.99779 * 179.97438 * 6 4 3 28 28 H 1.07998 * 126.81240 * 180.28354 * 7 3 2 29 29 H 1.09001 * 109.47040 * 334.69092 * 9 8 7 30 30 H 1.09002 * 109.47175 * 214.69351 * 9 8 7 31 31 H 0.97001 * 119.99603 * 174.72491 * 14 13 11 32 32 H 1.08994 * 115.55136 * 339.65496 * 19 10 9 33 33 H 1.08996 * 117.49945 * 359.97438 * 20 19 10 34 34 H 1.08997 * 117.50164 * 145.02447 * 20 19 10 35 35 H 1.09001 * 117.49772 * 252.51405 * 21 20 19 36 36 H 1.08997 * 117.49970 * 107.48484 * 21 20 19 37 37 H 1.08996 * 109.47523 * 269.98454 * 23 22 2 38 38 H 1.09008 * 109.46808 * 29.98064 * 23 22 2 39 39 H 1.08999 * 109.47478 * 149.97362 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8832 2.5228 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8011 3.5098 -0.0010 7 6 3.6947 0.6160 0.0067 8 6 3.6110 -0.7257 0.0012 9 6 4.7816 -1.6747 0.0021 10 7 5.0845 -2.0753 1.3783 11 6 4.4823 -3.1802 1.9180 12 1 4.1904 -3.1825 2.9579 13 6 4.2467 -4.2976 1.1286 14 7 4.9162 -4.4645 0.0078 15 14 2.9794 -5.5641 1.6571 16 1 3.6350 -6.6010 2.4938 17 1 1.9105 -4.8968 2.4430 18 1 2.3851 -6.2013 0.4545 19 6 6.0318 -1.2937 2.1770 20 6 6.5569 -1.9252 3.4679 21 6 5.5515 -0.7737 3.5335 22 7 2.2963 -1.0906 0.0005 23 6 1.8124 -2.4733 0.0001 24 1 -0.3633 0.0006 1.0277 25 1 -0.3634 0.8896 -0.5145 26 1 -0.3633 -0.8904 -0.5132 27 1 2.4691 4.4181 -0.0017 28 1 4.5979 1.2080 0.0128 29 1 5.6506 -1.1801 -0.4320 30 1 4.5341 -2.5576 -0.5872 31 1 4.8080 -5.2809 -0.5047 32 1 6.7166 -0.6631 1.6101 33 1 6.1972 -2.9220 3.7231 34 1 7.5874 -1.7103 3.7504 35 1 5.9208 0.1988 3.8591 36 1 4.5308 -1.0132 3.8315 37 1 1.6919 -2.8165 1.0275 38 1 0.8525 -2.5221 -0.5142 39 1 2.5325 -3.1102 -0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599986795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:59 Heat of formation + Delta-G solvation = 1.888720 kcal Electronic energy + Delta-G solvation = -22481.591590 eV Core-core repulsion = 19198.629239 eV Total energy + Delta-G solvation = -3282.962352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87039 -39.22162 -37.02401 -35.62082 -33.77321 -32.35192 -31.66817 -30.27741 -27.32600 -26.48886 -24.82865 -23.46814 -22.07688 -21.37051 -19.97360 -19.95939 -18.11817 -17.50730 -16.74622 -15.96178 -15.42262 -15.23946 -14.96083 -14.76319 -14.35180 -14.01080 -13.53188 -12.98339 -12.87904 -12.73606 -12.51313 -12.20110 -11.96313 -11.80375 -11.46670 -11.31136 -11.16966 -11.08573 -10.89930 -10.79578 -10.62958 -10.39809 -10.20137 -9.96816 -9.73114 -9.34791 -8.64264 -8.07234 -7.43267 -6.65033 -6.03182 -3.57729 1.91570 3.01528 3.13234 3.22579 3.24517 3.27055 3.78359 3.85535 4.23472 4.89307 5.11346 5.14433 5.25451 5.31685 5.42881 5.66229 5.72433 5.88484 5.88625 5.94185 6.05652 6.10935 6.16393 6.21168 6.23901 6.42698 6.48739 6.57751 6.61680 6.76574 6.89084 6.95976 7.13593 7.22240 7.45303 7.63708 7.79442 7.85820 8.32135 8.41161 8.95786 9.57573 10.16154 10.97845 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.006903 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.653859 B = 4055.480712 C = 5075.428372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.099 3.901 3 C -0.243 4.243 4 C 0.561 3.439 5 O -0.546 6.546 6 O -0.515 6.515 7 C -0.163 4.163 8 C 0.037 3.963 9 C 0.197 3.803 10 N -0.543 5.543 11 C -0.252 4.252 12 H 0.061 0.939 13 C 0.015 3.985 14 N -0.889 5.889 15 Si 0.882 3.118 16 H -0.282 1.282 17 H -0.275 1.275 18 H -0.284 1.284 19 C 0.130 3.870 20 C -0.196 4.196 21 C -0.223 4.223 22 N -0.411 5.411 23 C 0.068 3.932 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.402 0.598 28 H 0.140 0.860 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 7.059 -1.271 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.252 4.252 4 C 0.410 3.590 5 O -0.439 6.439 6 O -0.325 6.325 7 C -0.186 4.186 8 C -0.075 4.075 9 C 0.070 3.930 10 N -0.258 5.258 11 C -0.382 4.382 12 H 0.079 0.921 13 C -0.185 4.185 14 N -0.531 5.531 15 Si 0.710 3.290 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.209 1.209 19 C 0.021 3.979 20 C -0.235 4.235 21 C -0.263 4.263 22 N -0.085 5.085 23 C -0.074 4.074 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.258 0.742 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.055 6.187 -1.471 7.542 hybrid contribution -0.837 -0.130 0.571 1.022 sum -4.892 6.057 -0.900 7.837 Atomic orbital electron populations 1.20504 0.87810 1.03479 1.03006 1.20378 0.93113 0.85509 1.03058 1.19091 0.94326 0.87695 1.24089 1.19973 0.82551 0.85470 0.71001 1.90791 1.18589 1.84780 1.49753 1.84648 1.42395 1.18993 1.86423 1.21643 0.94783 0.92709 1.09482 1.22084 0.85213 0.95513 1.04646 1.19715 0.89363 0.96004 0.87873 1.43339 1.45078 1.26880 1.10482 1.18953 1.32097 0.91109 0.96000 0.92095 1.25151 0.99092 0.96565 0.97652 1.69830 1.40721 1.26015 1.16556 0.86656 0.82090 0.82031 0.78186 1.20842 1.20047 1.20913 1.21106 0.94010 0.96935 0.85868 1.23084 0.96931 0.98280 1.05196 1.23305 0.99021 0.96652 1.07348 1.43495 1.06017 1.05793 1.53178 1.22220 1.00436 0.80439 1.04272 0.90801 0.88881 0.91913 0.74151 0.84250 0.92664 0.87181 0.92997 0.89206 0.88459 0.90756 0.90868 0.89962 0.90142 0.91261 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.54 36.01 0.34 -0.99 16 2 C 0.10 1.79 6.93 -81.51 -0.56 1.23 16 3 C -0.24 -4.56 6.33 -103.01 -0.65 -5.22 16 4 C 0.56 9.72 8.32 34.33 0.29 10.00 16 5 O -0.55 -10.05 15.66 -19.31 -0.30 -10.35 16 6 O -0.51 -7.25 13.33 -40.74 -0.54 -7.80 16 7 C -0.16 -3.12 10.89 -37.49 -0.41 -3.53 16 8 C 0.04 0.74 6.42 -81.89 -0.53 0.21 16 9 C 0.20 4.24 5.42 -5.20 -0.03 4.22 16 10 N -0.54 -12.35 2.77 -167.03 -0.46 -12.82 16 11 C -0.25 -6.14 7.90 -15.06 -0.12 -6.26 16 12 H 0.06 1.56 7.17 -52.48 -0.38 1.18 16 13 C 0.02 0.37 3.51 -17.43 -0.06 0.30 16 14 N -0.89 -22.44 11.30 55.49 0.63 -21.82 16 15 Si 0.88 19.12 28.29 -169.99 -4.81 14.31 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.13 2.67 6.62 -67.93 -0.45 2.22 16 20 C -0.20 -3.81 9.80 -26.73 -0.26 -4.07 16 21 C -0.22 -4.27 10.09 -26.73 -0.27 -4.54 16 22 N -0.41 -7.81 3.08 -115.00 -0.35 -8.17 16 23 C 0.07 1.20 9.42 59.85 0.56 1.76 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.09 1.40 6.51 -51.93 -0.34 1.06 16 26 H 0.06 0.79 6.93 -51.93 -0.36 0.43 16 27 H 0.40 3.51 9.11 45.56 0.42 3.93 16 28 H 0.14 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.11 2.59 4.34 -51.93 -0.23 2.37 16 31 H 0.26 6.38 8.32 -40.82 -0.34 6.04 16 32 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 33 H 0.10 2.08 6.93 -51.93 -0.36 1.72 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.73 8.01 -51.93 -0.42 1.31 16 37 H 0.08 1.51 7.25 -51.93 -0.38 1.13 16 38 H 0.07 0.98 6.88 -51.92 -0.36 0.62 16 39 H 0.10 1.95 6.04 -51.93 -0.31 1.64 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -28.21 323.06 -7.50 -35.70 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.37 Total: 10.73 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.15 Total: -4.67 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.19 Total: -42.80 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.85 Total: -18.15 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.81 Total: 14.31 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.21 -7.50 -35.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.590 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds