Wall clock time and date at job start Tue Mar 31 2020 00:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37843 * 125.89574 * 2 1 4 4 C 1.47101 * 127.02314 * 359.97438 * 3 2 1 5 5 O 1.21552 * 120.00299 * 359.97438 * 4 3 2 6 6 O 1.34791 * 119.99633 * 180.02562 * 4 3 2 7 7 C 1.46753 * 105.94972 * 179.72837 * 3 2 1 8 8 C 1.34438 * 106.37242 * 0.39538 * 7 3 2 9 9 C 1.50695 * 125.45610 * 179.86768 * 8 7 3 10 10 N 1.46494 * 109.47443 * 94.69184 * 9 8 7 11 11 C 1.36929 * 120.00176 * 90.00250 * 10 9 8 12 12 H 1.08004 * 120.00398 * 216.97969 * 11 10 9 13 13 C 1.38819 * 120.00035 * 36.96922 * 11 10 9 14 14 N 1.31617 * 119.99755 * 19.49063 * 13 11 10 15 15 Si 1.86800 * 119.99993 * 199.49052 * 13 11 10 16 16 H 1.48501 * 109.46936 * 270.00163 * 15 13 11 17 17 H 1.48502 * 109.47277 * 29.99780 * 15 13 11 18 18 H 1.48502 * 109.47105 * 150.00072 * 15 13 11 19 19 C 1.46505 * 120.00024 * 269.99883 * 10 9 8 20 20 C 1.52996 * 117.49852 * 193.94234 * 19 10 9 21 21 C 1.53004 * 60.00258 * 252.51329 * 20 19 10 22 22 N 1.34625 * 125.89475 * 179.97438 * 2 1 3 23 23 C 1.46500 * 124.81506 * 0.04996 * 22 2 1 24 24 H 1.09003 * 109.47097 * 270.03541 * 1 2 3 25 25 H 1.09000 * 109.47356 * 30.04121 * 1 2 3 26 26 H 1.09004 * 109.47047 * 150.04167 * 1 2 3 27 27 H 0.96705 * 116.99779 * 179.97438 * 6 4 3 28 28 H 1.07998 * 126.81240 * 180.28354 * 7 3 2 29 29 H 1.09001 * 109.47040 * 334.69092 * 9 8 7 30 30 H 1.09002 * 109.47175 * 214.69351 * 9 8 7 31 31 H 0.97001 * 119.99603 * 174.72491 * 14 13 11 32 32 H 1.08994 * 115.55136 * 339.65496 * 19 10 9 33 33 H 1.08996 * 117.49945 * 359.97438 * 20 19 10 34 34 H 1.08997 * 117.50164 * 145.02447 * 20 19 10 35 35 H 1.09001 * 117.49772 * 252.51405 * 21 20 19 36 36 H 1.08997 * 117.49970 * 107.48484 * 21 20 19 37 37 H 1.08996 * 109.47523 * 269.98454 * 23 22 2 38 38 H 1.09008 * 109.46808 * 29.98064 * 23 22 2 39 39 H 1.08999 * 109.47478 * 149.97362 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8832 2.5228 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8011 3.5098 -0.0010 7 6 3.6947 0.6160 0.0067 8 6 3.6110 -0.7257 0.0012 9 6 4.7816 -1.6747 0.0021 10 7 5.0845 -2.0753 1.3783 11 6 4.4823 -3.1802 1.9180 12 1 4.1904 -3.1825 2.9579 13 6 4.2467 -4.2976 1.1286 14 7 4.9162 -4.4645 0.0078 15 14 2.9794 -5.5641 1.6571 16 1 3.6350 -6.6010 2.4938 17 1 1.9105 -4.8968 2.4430 18 1 2.3851 -6.2013 0.4545 19 6 6.0318 -1.2937 2.1770 20 6 6.5569 -1.9252 3.4679 21 6 5.5515 -0.7737 3.5335 22 7 2.2963 -1.0906 0.0005 23 6 1.8124 -2.4733 0.0001 24 1 -0.3633 0.0006 1.0277 25 1 -0.3634 0.8896 -0.5145 26 1 -0.3633 -0.8904 -0.5132 27 1 2.4691 4.4181 -0.0017 28 1 4.5979 1.2080 0.0128 29 1 5.6506 -1.1801 -0.4320 30 1 4.5341 -2.5576 -0.5872 31 1 4.8080 -5.2809 -0.5047 32 1 6.7166 -0.6631 1.6101 33 1 6.1972 -2.9220 3.7231 34 1 7.5874 -1.7103 3.7504 35 1 5.9208 0.1988 3.8591 36 1 4.5308 -1.0132 3.8315 37 1 1.6919 -2.8165 1.0275 38 1 0.8525 -2.5221 -0.5142 39 1 2.5325 -3.1102 -0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599986795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:58 Heat of formation + Delta-G solvation = -13.614489 kcal Electronic energy + Delta-G solvation = -22482.263860 eV Core-core repulsion = 19198.629239 eV Total energy + Delta-G solvation = -3283.634621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.29503 -40.51570 -38.66541 -36.85818 -35.46129 -33.81741 -33.21880 -31.84026 -28.86171 -27.90086 -26.48772 -25.02990 -23.44593 -22.93163 -21.66716 -21.36869 -19.54313 -18.80945 -18.41667 -17.54589 -16.89931 -16.76071 -16.32740 -16.25527 -15.88220 -15.68547 -14.95273 -14.60492 -14.26391 -13.99747 -13.77999 -13.72986 -13.53985 -13.28850 -12.91398 -12.83687 -12.65999 -12.61721 -12.47390 -12.38551 -12.18752 -12.04188 -11.84909 -11.42856 -11.39554 -10.93090 -10.45767 -9.52210 -8.89874 -8.43810 -7.86844 -5.45053 0.56140 1.36340 1.44956 1.50225 1.57161 1.90713 2.38474 2.45921 2.60544 3.13777 3.46410 3.61542 3.82375 3.99309 4.14967 4.25631 4.32536 4.34963 4.51722 4.54904 4.63065 4.66894 4.72557 4.80601 4.85979 4.95941 5.00730 5.07387 5.12921 5.33821 5.36801 5.54894 5.56054 5.70979 5.74081 5.97317 6.30514 6.38716 6.51200 7.13034 7.23617 7.80346 8.34644 9.11015 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.006903 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.653859 B = 4055.480712 C = 5075.428372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.100 3.900 3 C -0.265 4.265 4 C 0.566 3.434 5 O -0.560 6.560 6 O -0.509 6.509 7 C -0.161 4.161 8 C 0.016 3.984 9 C 0.204 3.796 10 N -0.556 5.556 11 C -0.254 4.254 12 H 0.043 0.957 13 C -0.010 4.010 14 N -0.910 5.910 15 Si 0.926 3.074 16 H -0.292 1.292 17 H -0.270 1.270 18 H -0.277 1.277 19 C 0.109 3.891 20 C -0.191 4.191 21 C -0.207 4.207 22 N -0.418 5.418 23 C 0.071 3.929 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.426 0.574 28 H 0.149 0.851 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.257 0.743 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 8.183 -1.143 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.273 4.273 4 C 0.415 3.585 5 O -0.455 6.455 6 O -0.322 6.322 7 C -0.184 4.184 8 C -0.095 4.095 9 C 0.077 3.923 10 N -0.272 5.272 11 C -0.384 4.384 12 H 0.061 0.939 13 C -0.208 4.208 14 N -0.554 5.554 15 Si 0.753 3.247 16 H -0.219 1.219 17 H -0.194 1.194 18 H -0.202 1.202 19 C 0.000 4.000 20 C -0.230 4.230 21 C -0.248 4.248 22 N -0.092 5.092 23 C -0.070 4.070 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.287 0.713 28 H 0.166 0.834 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.742 7.350 -1.337 8.849 hybrid contribution -0.584 -0.387 0.550 0.891 sum -5.326 6.963 -0.788 8.802 Atomic orbital electron populations 1.20576 0.85427 1.04593 1.03796 1.20947 0.94604 0.84983 1.01449 1.19394 0.94210 0.88986 1.24758 1.19727 0.82524 0.85527 0.70722 1.90784 1.19122 1.85053 1.50521 1.84583 1.41652 1.20261 1.85699 1.21797 0.95580 0.92437 1.08616 1.21847 0.85507 0.95623 1.06515 1.19515 0.90184 0.95453 0.87101 1.43468 1.45775 1.26943 1.10992 1.18868 1.32275 0.91909 0.95328 0.93905 1.25497 1.00050 0.97617 0.97608 1.69928 1.41872 1.26282 1.17325 0.85984 0.80675 0.80113 0.77907 1.21910 1.19448 1.20184 1.21381 0.94550 0.97629 0.86406 1.23062 0.98400 0.97143 1.04356 1.23218 0.97834 0.97736 1.06013 1.43586 1.05825 1.06431 1.53349 1.22197 1.01609 0.79660 1.03572 0.90022 0.89015 0.89513 0.71327 0.83366 0.92291 0.89287 0.93280 0.87500 0.90969 0.87955 0.88169 0.92251 0.91533 0.87555 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 9.54 71.24 0.68 -1.67 16 2 C 0.10 3.46 6.93 42.04 0.29 3.75 16 3 C -0.26 -9.57 6.33 -18.82 -0.12 -9.69 16 4 C 0.57 18.51 8.32 70.15 0.58 19.09 16 5 O -0.56 -19.51 15.66 19.67 0.31 -19.20 16 6 O -0.51 -13.11 13.33 -57.02 -0.76 -13.87 16 7 C -0.16 -6.02 10.89 23.63 0.26 -5.76 16 8 C 0.02 0.63 6.42 40.97 0.26 0.90 16 9 C 0.20 8.86 5.42 85.63 0.46 9.33 16 10 N -0.56 -25.48 2.77 -682.35 -1.89 -27.38 16 11 C -0.25 -12.56 7.90 84.04 0.66 -11.90 16 12 H 0.04 2.25 7.17 -2.91 -0.02 2.23 16 13 C -0.01 -0.48 3.51 84.86 0.30 -0.18 16 14 N -0.91 -46.66 11.30 21.65 0.24 -46.41 16 15 Si 0.93 39.43 28.29 68.60 1.94 41.37 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 19 C 0.11 4.39 6.62 44.99 0.30 4.69 16 20 C -0.19 -7.24 9.80 30.59 0.30 -6.94 16 21 C -0.21 -7.72 10.09 30.60 0.31 -7.41 16 22 N -0.42 -15.56 3.08 -517.74 -1.60 -17.16 16 23 C 0.07 2.44 9.42 127.77 1.20 3.64 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.09 2.55 6.51 -2.39 -0.02 2.53 16 26 H 0.09 1.90 6.93 -2.39 -0.02 1.89 16 27 H 0.43 6.23 9.11 -74.05 -0.67 5.55 16 28 H 0.15 5.11 8.06 -2.91 -0.02 5.09 16 29 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 30 H 0.09 4.29 4.34 -2.39 -0.01 4.28 16 31 H 0.26 12.83 8.32 -92.71 -0.77 12.05 16 32 H 0.11 3.90 8.10 -2.39 -0.02 3.88 16 33 H 0.07 3.11 6.93 -2.39 -0.02 3.10 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.06 2.48 8.01 -2.39 -0.02 2.46 16 37 H 0.07 2.46 7.25 -2.39 -0.02 2.44 16 38 H 0.11 2.77 6.88 -2.38 -0.02 2.76 16 39 H 0.08 3.15 6.04 -2.39 -0.01 3.13 16 Total: -1.00 -59.91 323.06 4.14 -55.76 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.41 Total: 29.03 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.49 Total: -2.15 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.25 Total: -90.95 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.45 Total: -33.07 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.94 Total: 41.37 kcal Total: -59.91 4.14 -55.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.150 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds