Wall clock time and date at job start Tue Mar 31 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39800 * 126.51226 * 2 1 4 4 C 1.35490 * 107.83900 * 179.87072 * 3 2 1 5 5 C 1.50705 * 125.50524 * 180.15086 * 4 3 2 6 6 N 1.46899 * 109.47058 * 265.26030 * 5 4 3 7 7 C 1.46898 * 110.99911 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47092 * 185.35531 * 7 6 5 9 9 C 1.50702 * 115.55444 * 65.04800 * 8 7 6 10 10 H 1.07998 * 119.99673 * 265.45009 * 9 8 7 11 11 C 1.37882 * 119.99951 * 85.44450 * 9 8 7 12 12 N 1.31511 * 119.99803 * 353.59703 * 11 9 8 13 13 Si 1.86795 * 119.99827 * 173.59744 * 11 9 8 14 14 H 1.48501 * 109.47247 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46763 * 119.99969 * 13 11 9 16 16 H 1.48487 * 109.47294 * 240.00138 * 13 11 9 17 17 C 1.53004 * 117.49843 * 279.37849 * 8 7 6 18 18 C 1.52998 * 117.50045 * 210.71908 * 8 7 6 19 19 N 1.34959 * 108.98686 * 0.40009 * 4 3 2 20 20 H 0.97005 * 125.63243 * 179.75320 * 19 4 3 21 21 C 1.37700 * 108.72844 * 359.74812 * 19 4 3 22 22 C 1.46487 * 126.26412 * 179.97438 * 21 19 4 23 23 O 1.21619 * 120.00293 * 180.02562 * 22 21 19 24 24 O 1.34899 * 119.99829 * 0.04122 * 22 21 19 25 25 H 1.09001 * 109.47370 * 269.68534 * 1 2 3 26 26 H 1.09007 * 109.47032 * 149.68934 * 1 2 3 27 27 H 1.09002 * 109.47337 * 29.68485 * 1 2 3 28 28 H 1.07992 * 126.08342 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47106 * 25.26625 * 5 4 3 30 30 H 1.09005 * 109.46541 * 145.26411 * 5 4 3 31 31 H 1.00895 * 111.00437 * 303.95844 * 6 5 4 32 32 H 1.08999 * 109.47017 * 305.35315 * 7 6 5 33 33 H 1.08995 * 109.47493 * 65.34986 * 7 6 5 34 34 H 0.97003 * 119.99620 * 179.97438 * 12 11 9 35 35 H 1.09003 * 117.49477 * 359.97438 * 17 8 7 36 36 H 1.08998 * 117.50283 * 145.01827 * 17 8 7 37 37 H 1.09005 * 117.50233 * 214.97832 * 18 8 7 38 38 H 1.09003 * 117.49925 * 359.97426 * 18 8 7 39 39 H 0.96696 * 116.99633 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1236 0.0000 4 6 3.6223 0.6898 0.0029 5 6 4.8443 1.5718 0.0072 6 7 5.3120 1.7672 -1.3716 7 6 6.5050 2.6236 -1.4065 8 6 6.8828 2.9129 -2.8605 9 6 5.8808 3.7211 -3.6440 10 1 5.1405 3.2215 -4.2513 11 6 5.9090 5.0984 -3.5855 12 7 6.7254 5.7044 -2.7513 13 14 4.7878 6.1034 -4.6910 14 1 3.9719 5.1897 -5.5305 15 1 3.8902 6.9410 -3.8554 16 1 5.6093 6.9783 -5.5653 17 6 7.6665 1.8366 -3.6144 18 6 8.3645 3.1267 -3.1764 19 7 3.6298 -0.6597 -0.0042 20 1 4.4213 -1.2205 -0.0073 21 6 2.3281 -1.1090 -0.0061 22 6 1.8944 -2.5082 -0.0138 23 8 0.7084 -2.7773 -0.0152 24 8 2.8107 -3.4983 -0.0190 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3634 0.8928 -0.5089 28 1 2.0158 2.1541 -0.0004 29 1 4.5939 2.5375 0.4462 30 1 5.6316 1.0989 0.5943 31 1 5.4894 0.8820 -1.8222 32 1 6.2943 3.5613 -0.8923 33 1 7.3318 2.1152 -0.9105 34 1 6.7455 6.6734 -2.7104 35 1 7.9134 0.9226 -3.0742 36 1 7.4577 1.7133 -4.6771 37 1 8.6145 3.8516 -3.9511 38 1 9.0701 3.0616 -2.3482 39 1 2.4764 -4.4056 -0.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600205509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:11 Heat of formation + Delta-G solvation = -28.237685 kcal Electronic energy + Delta-G solvation = -21079.543025 eV Core-core repulsion = 17795.274295 eV Total energy + Delta-G solvation = -3284.268731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52435 -39.69570 -37.10330 -36.25801 -34.59219 -32.54544 -31.83569 -30.28868 -27.33751 -26.65474 -25.36115 -23.55466 -22.29004 -21.07026 -20.41508 -19.23398 -19.05557 -18.59200 -17.52624 -16.21356 -15.92625 -15.18997 -15.07386 -14.53922 -14.44200 -13.75112 -13.60341 -13.55448 -13.38261 -12.95210 -12.84503 -12.59785 -12.22700 -11.93875 -11.75526 -11.70486 -11.33850 -11.26390 -10.93353 -10.67952 -10.62480 -10.43415 -10.19016 -9.49833 -8.81692 -8.73122 -8.38299 -8.24214 -8.03802 -7.67056 -5.95897 -3.97064 1.15070 2.64593 2.79416 3.08620 3.19325 3.34480 3.42883 3.48180 4.48749 4.69976 4.96534 4.99749 5.20451 5.28825 5.34215 5.42019 5.48762 5.74114 5.81117 5.88236 5.96307 6.10074 6.11942 6.25450 6.26192 6.43370 6.45546 6.55500 6.70077 6.80564 6.81064 6.97878 7.09358 7.36085 7.44665 7.50971 7.75934 7.81091 7.97338 8.00022 8.54254 9.02674 9.66558 11.14049 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004020 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.196622 B = 6963.293143 C = 7700.534016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.055 4.055 3 C -0.192 4.192 4 C 0.092 3.908 5 C 0.118 3.882 6 N -0.661 5.661 7 C 0.107 3.893 8 C 0.052 3.948 9 C -0.468 4.468 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.287 1.287 17 C -0.216 4.216 18 C -0.157 4.157 19 N -0.525 5.525 20 H 0.419 0.581 21 C -0.065 4.065 22 C 0.555 3.445 23 O -0.512 6.512 24 O -0.524 6.524 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.329 0.671 32 H 0.080 0.920 33 H -0.004 1.004 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 -13.173 7.982 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C -0.217 4.217 4 C -0.027 4.027 5 C -0.012 4.012 6 N -0.291 5.291 7 C -0.021 4.021 8 C 0.051 3.949 9 C -0.506 4.506 10 H 0.078 0.922 11 C -0.134 4.134 12 N -0.524 5.524 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.254 4.254 18 C -0.195 4.195 19 N -0.121 5.121 20 H 0.257 0.743 21 C -0.175 4.175 22 C 0.402 3.598 23 O -0.401 6.401 24 O -0.337 6.337 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.146 0.854 32 H 0.099 0.901 33 H 0.014 0.986 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.895 -12.272 7.924 15.753 hybrid contribution 0.471 -0.855 -0.253 1.008 sum -5.423 -13.127 7.671 16.143 Atomic orbital electron populations 1.20388 0.89212 1.03143 1.02204 1.19989 0.95746 0.90471 1.00210 1.20638 0.90608 0.98997 1.11420 1.20614 0.97527 0.82078 1.02525 1.20608 0.90530 0.97674 0.92365 1.60317 1.37149 1.18794 1.12861 1.21605 0.86845 0.95497 0.98199 1.18820 0.90649 0.94844 0.90578 1.20338 1.14089 0.89905 1.26308 0.92189 1.24927 0.95437 0.97787 0.95253 1.70012 1.37979 1.08690 1.35741 0.86602 0.80720 0.80224 0.80841 1.19770 1.21160 1.21316 1.22998 1.10097 0.92098 1.00180 1.22522 0.97411 0.97701 1.01890 1.41719 1.07172 1.06741 1.56466 0.74314 1.18860 0.84449 0.89694 1.24482 1.19520 0.83404 0.84425 0.72488 1.90910 1.17677 1.83741 1.47768 1.84594 1.42641 1.19894 1.86527 0.91399 0.90484 0.91339 0.83275 0.88252 0.95288 0.85383 0.90122 0.98590 0.93371 0.92332 0.90482 0.89997 0.92150 0.72761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.83 36.00 0.35 -0.76 16 2 C -0.06 -0.77 6.22 -104.13 -0.65 -1.42 16 3 C -0.19 -2.74 10.66 -39.98 -0.43 -3.17 16 4 C 0.09 1.28 6.62 -82.20 -0.54 0.73 16 5 C 0.12 1.71 6.20 -4.97 -0.03 1.68 16 6 N -0.66 -11.93 6.37 -115.06 -0.73 -12.66 16 7 C 0.11 2.22 5.51 -3.83 -0.02 2.20 16 8 C 0.05 1.22 1.55 -155.66 -0.24 0.98 16 9 C -0.47 -12.49 8.74 -34.44 -0.30 -12.79 16 10 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 11 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 12 N -0.89 -24.60 12.92 55.43 0.72 -23.89 16 13 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 C -0.22 -4.55 9.96 -26.69 -0.27 -4.81 16 18 C -0.16 -3.59 9.41 -26.69 -0.25 -3.84 16 19 N -0.53 -6.46 6.07 -5.82 -0.04 -6.49 16 20 H 0.42 4.20 8.96 -40.82 -0.37 3.84 16 21 C -0.07 -0.88 7.10 -82.00 -0.58 -1.46 16 22 C 0.56 6.95 8.30 34.05 0.28 7.23 16 23 O -0.51 -7.39 15.60 -19.36 -0.30 -7.69 16 24 O -0.52 -4.77 13.44 -41.04 -0.55 -5.32 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.99 6.50 -51.93 -0.34 0.65 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.33 5.63 8.78 -39.29 -0.34 5.29 16 32 H 0.08 1.88 8.13 -51.93 -0.42 1.45 16 33 H 0.00 -0.08 8.09 -51.93 -0.42 -0.50 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.41 1.83 9.11 45.56 0.42 2.24 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -30.70 339.64 -8.40 -39.10 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.83 Total: 9.35 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.77 Total: -13.70 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.05 Total: -43.04 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.85 Total: -13.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.70 -8.40 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600205509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.863 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds