Wall clock time and date at job start Tue Mar 31 2020 00:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39800 * 126.51226 * 2 1 4 4 C 1.35490 * 107.83900 * 179.87072 * 3 2 1 5 5 C 1.50705 * 125.50524 * 180.15086 * 4 3 2 6 6 N 1.46899 * 109.47058 * 265.26030 * 5 4 3 7 7 C 1.46898 * 110.99911 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47092 * 185.35531 * 7 6 5 9 9 C 1.50702 * 115.55444 * 65.04800 * 8 7 6 10 10 H 1.07998 * 119.99673 * 265.45009 * 9 8 7 11 11 C 1.37882 * 119.99951 * 85.44450 * 9 8 7 12 12 N 1.31511 * 119.99803 * 353.59703 * 11 9 8 13 13 Si 1.86795 * 119.99827 * 173.59744 * 11 9 8 14 14 H 1.48501 * 109.47247 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46763 * 119.99969 * 13 11 9 16 16 H 1.48487 * 109.47294 * 240.00138 * 13 11 9 17 17 C 1.53004 * 117.49843 * 279.37849 * 8 7 6 18 18 C 1.52998 * 117.50045 * 210.71908 * 8 7 6 19 19 N 1.34959 * 108.98686 * 0.40009 * 4 3 2 20 20 H 0.97005 * 125.63243 * 179.75320 * 19 4 3 21 21 C 1.37700 * 108.72844 * 359.74812 * 19 4 3 22 22 C 1.46487 * 126.26412 * 179.97438 * 21 19 4 23 23 O 1.21619 * 120.00293 * 180.02562 * 22 21 19 24 24 O 1.34899 * 119.99829 * 0.04122 * 22 21 19 25 25 H 1.09001 * 109.47370 * 269.68534 * 1 2 3 26 26 H 1.09007 * 109.47032 * 149.68934 * 1 2 3 27 27 H 1.09002 * 109.47337 * 29.68485 * 1 2 3 28 28 H 1.07992 * 126.08342 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47106 * 25.26625 * 5 4 3 30 30 H 1.09005 * 109.46541 * 145.26411 * 5 4 3 31 31 H 1.00895 * 111.00437 * 303.95844 * 6 5 4 32 32 H 1.08999 * 109.47017 * 305.35315 * 7 6 5 33 33 H 1.08995 * 109.47493 * 65.34986 * 7 6 5 34 34 H 0.97003 * 119.99620 * 179.97438 * 12 11 9 35 35 H 1.09003 * 117.49477 * 359.97438 * 17 8 7 36 36 H 1.08998 * 117.50283 * 145.01827 * 17 8 7 37 37 H 1.09005 * 117.50233 * 214.97832 * 18 8 7 38 38 H 1.09003 * 117.49925 * 359.97426 * 18 8 7 39 39 H 0.96696 * 116.99633 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1236 0.0000 4 6 3.6223 0.6898 0.0029 5 6 4.8443 1.5718 0.0072 6 7 5.3120 1.7672 -1.3716 7 6 6.5050 2.6236 -1.4065 8 6 6.8828 2.9129 -2.8605 9 6 5.8808 3.7211 -3.6440 10 1 5.1405 3.2215 -4.2513 11 6 5.9090 5.0984 -3.5855 12 7 6.7254 5.7044 -2.7513 13 14 4.7878 6.1034 -4.6910 14 1 3.9719 5.1897 -5.5305 15 1 3.8902 6.9410 -3.8554 16 1 5.6093 6.9783 -5.5653 17 6 7.6665 1.8366 -3.6144 18 6 8.3645 3.1267 -3.1764 19 7 3.6298 -0.6597 -0.0042 20 1 4.4213 -1.2205 -0.0073 21 6 2.3281 -1.1090 -0.0061 22 6 1.8944 -2.5082 -0.0138 23 8 0.7084 -2.7773 -0.0152 24 8 2.8107 -3.4983 -0.0190 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3634 0.8928 -0.5089 28 1 2.0158 2.1541 -0.0004 29 1 4.5939 2.5375 0.4462 30 1 5.6316 1.0989 0.5943 31 1 5.4894 0.8820 -1.8222 32 1 6.2943 3.5613 -0.8923 33 1 7.3318 2.1152 -0.9105 34 1 6.7455 6.6734 -2.7104 35 1 7.9134 0.9226 -3.0742 36 1 7.4577 1.7133 -4.6771 37 1 8.6145 3.8516 -3.9511 38 1 9.0701 3.0616 -2.3482 39 1 2.4764 -4.4056 -0.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600205509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:10 Heat of formation + Delta-G solvation = -48.913375 kcal Electronic energy + Delta-G solvation = -21080.439590 eV Core-core repulsion = 17795.274295 eV Total energy + Delta-G solvation = -3285.165296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53787 -40.63219 -38.78776 -37.13832 -36.02063 -33.87299 -33.55211 -31.44063 -28.48731 -27.90378 -27.22573 -24.96672 -23.36182 -22.78958 -21.51326 -20.84674 -20.23164 -19.55901 -18.51839 -17.96196 -16.89043 -16.74721 -16.32081 -16.19852 -15.78160 -15.22359 -14.98546 -14.71065 -14.53993 -14.25367 -13.96182 -13.58611 -13.57401 -13.23296 -13.11875 -12.93471 -12.85748 -12.64742 -12.58852 -12.52567 -12.27824 -11.98859 -11.61148 -11.31673 -10.71063 -10.34998 -9.91788 -9.75295 -9.28262 -9.01882 -8.01211 -6.06251 0.14506 1.43099 1.47133 1.56703 1.57833 1.87776 2.07712 2.29559 2.50688 3.29325 3.35454 3.69541 3.83377 4.01191 4.18204 4.31513 4.42127 4.50173 4.56341 4.69029 4.74361 4.78014 4.85050 4.88734 4.95685 5.01320 5.08813 5.17261 5.31575 5.39079 5.52509 5.66738 5.77701 5.78749 5.91321 5.93418 6.28192 6.45214 6.51675 6.69126 6.95133 6.96718 7.59082 9.07801 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004020 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.196622 B = 6963.293143 C = 7700.534016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.072 4.072 3 C -0.208 4.208 4 C 0.088 3.912 5 C 0.125 3.875 6 N -0.675 5.675 7 C 0.123 3.877 8 C 0.024 3.976 9 C -0.478 4.478 10 H 0.044 0.956 11 C 0.026 3.974 12 N -0.910 5.910 13 Si 0.939 3.061 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.189 4.189 18 C -0.165 4.165 19 N -0.512 5.512 20 H 0.431 0.569 21 C -0.073 4.073 22 C 0.561 3.439 23 O -0.535 6.535 24 O -0.513 6.513 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.336 0.664 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -14.775 8.381 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.232 4.232 4 C -0.032 4.032 5 C -0.004 4.004 6 N -0.306 5.306 7 C -0.006 4.006 8 C 0.023 3.977 9 C -0.516 4.516 10 H 0.062 0.938 11 C -0.174 4.174 12 N -0.549 5.549 13 Si 0.767 3.233 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.227 4.227 18 C -0.203 4.203 19 N -0.108 5.108 20 H 0.271 0.729 21 C -0.183 4.183 22 C 0.408 3.592 23 O -0.426 6.426 24 O -0.328 6.328 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.166 0.834 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -5.799 -13.921 8.321 17.223 hybrid contribution 0.453 -0.447 -0.383 0.743 sum -5.346 -14.368 7.938 17.264 Atomic orbital electron populations 1.20380 0.88335 1.03054 1.02813 1.20258 0.96653 0.90629 1.00562 1.20789 0.91187 0.99299 1.11912 1.20435 0.96993 0.82618 1.03180 1.20523 0.91319 0.97897 0.90702 1.60155 1.36047 1.19050 1.15368 1.21219 0.88434 0.94953 0.96000 1.18952 0.90208 0.96290 0.92206 1.20536 1.14304 0.90473 1.26269 0.93785 1.25494 0.96728 0.98756 0.96377 1.70093 1.39263 1.08676 1.36865 0.85797 0.79248 0.78901 0.79389 1.19800 1.21004 1.21105 1.22979 1.07356 0.92360 0.99977 1.22439 0.97512 0.98523 1.01840 1.41634 1.07360 1.06286 1.55562 0.72943 1.19083 0.84749 0.90393 1.24049 1.19351 0.83250 0.84647 0.71948 1.90906 1.18692 1.84123 1.48868 1.84541 1.41603 1.20931 1.85693 0.90429 0.91365 0.90555 0.83352 0.88921 0.92811 0.84592 0.93233 0.96641 0.93530 0.89082 0.90989 0.92667 0.90756 0.70198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 9.83 71.24 0.70 -1.38 16 2 C -0.07 -1.94 6.22 -19.55 -0.12 -2.06 16 3 C -0.21 -5.76 10.66 22.01 0.23 -5.53 16 4 C 0.09 2.30 6.62 41.44 0.27 2.58 16 5 C 0.12 3.41 6.20 85.56 0.53 3.94 16 6 N -0.68 -23.38 6.37 -517.94 -3.30 -26.68 16 7 C 0.12 4.97 5.51 86.30 0.48 5.45 16 8 C 0.02 1.12 1.55 -52.93 -0.08 1.04 16 9 C -0.48 -25.56 8.74 25.60 0.22 -25.33 16 10 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 11 C 0.03 1.39 5.39 84.66 0.46 1.84 16 12 N -0.91 -51.04 12.92 21.45 0.28 -50.76 16 13 Si 0.94 43.86 29.54 68.60 2.03 45.89 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 C -0.19 -7.58 9.96 30.62 0.30 -7.28 16 18 C -0.16 -7.41 9.41 30.62 0.29 -7.12 16 19 N -0.51 -11.52 6.07 -172.32 -1.05 -12.56 16 20 H 0.43 7.45 8.96 -92.70 -0.83 6.62 16 21 C -0.07 -1.84 7.10 40.31 0.29 -1.55 16 22 C 0.56 13.00 8.30 69.97 0.58 13.58 16 23 O -0.53 -14.73 15.60 19.45 0.30 -14.43 16 24 O -0.51 -7.92 13.44 -58.14 -0.78 -8.70 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.71 6.50 -2.38 -0.02 1.70 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.34 10.75 8.78 -89.70 -0.79 9.96 16 32 H 0.05 2.30 8.13 -2.39 -0.02 2.29 16 33 H 0.02 0.56 8.09 -2.39 -0.02 0.55 16 34 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.05 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.44 2.55 9.11 -74.06 -0.67 1.87 16 Total: -1.00 -65.03 339.64 0.43 -64.60 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -1.20 Total: 24.47 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.15 Total: -21.83 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.07 Total: -90.00 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.48 Total: -23.13 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.03 0.43 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600205509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.684 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds