Wall clock time and date at job start Tue Mar 31 2020 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38834 * 120.39365 * 2 1 4 4 C 1.38241 * 118.58715 * 180.26837 * 3 2 1 5 5 C 1.39524 * 119.29628 * 359.74644 * 4 3 2 6 6 N 1.38973 * 119.63713 * 180.02562 * 5 4 3 7 7 C 1.46503 * 119.99778 * 359.97124 * 6 5 4 8 8 C 1.53007 * 109.47174 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47047 * 300.00250 * 8 7 6 10 10 C 1.53003 * 109.46866 * 60.00017 * 8 7 6 11 11 C 1.50698 * 109.47225 * 179.97438 * 8 7 6 12 12 H 1.08007 * 119.99848 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99950 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00266 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00166 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47124 * 59.99335 * 15 13 11 17 17 H 1.48496 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46653 * 299.99812 * 15 13 11 19 19 N 1.32041 * 120.72818 * 359.97438 * 5 4 3 20 20 C 1.32900 * 121.52795 * 0.02562 * 19 5 4 21 21 C 1.48050 * 119.67929 * 179.97438 * 20 19 5 22 22 O 1.21431 * 120.00219 * 174.47156 * 21 20 19 23 23 O 1.34686 * 120.00280 * 354.47228 * 21 20 19 24 24 H 1.08999 * 109.47395 * 263.47625 * 1 2 3 25 25 H 1.09003 * 109.46935 * 23.47253 * 1 2 3 26 26 H 1.09000 * 109.47312 * 143.47191 * 1 2 3 27 27 H 1.07995 * 120.70341 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.35372 * 179.76683 * 4 3 2 29 29 H 0.96996 * 120.00306 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47139 * 300.00052 * 7 6 5 31 31 H 1.08998 * 109.47197 * 60.00593 * 7 6 5 32 32 H 1.09003 * 109.47031 * 59.99494 * 9 8 7 33 33 H 1.08997 * 109.47452 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46809 * 299.99972 * 9 8 7 35 35 H 1.08995 * 109.46944 * 59.99936 * 10 8 7 36 36 H 1.09000 * 109.46560 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.47415 * 299.99998 * 10 8 7 38 38 H 0.96998 * 120.00111 * 180.02562 * 14 13 11 39 39 H 0.96702 * 117.00403 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1975 0.0000 4 6 3.5911 1.1540 -0.0057 5 6 4.2352 -0.0837 -0.0058 6 7 5.6239 -0.1358 -0.0110 7 6 6.4034 1.1046 -0.0169 8 6 7.8962 0.7690 -0.0224 9 6 8.2407 -0.0440 1.2271 10 6 8.2302 -0.0492 -1.2714 11 6 8.6980 2.0449 -0.0291 12 1 8.1933 2.9998 -0.0289 13 6 10.0757 1.9933 -0.0343 14 7 10.6902 0.8305 -0.0330 15 14 11.0697 3.5749 -0.0419 16 1 10.7449 4.3694 1.1699 17 1 12.5184 3.2491 -0.0474 18 1 10.7356 4.3636 -1.2550 19 7 3.5397 -1.2062 -0.0001 20 6 2.2108 -1.2003 0.0054 21 6 1.4720 -2.4833 0.0112 22 8 0.2624 -2.4870 0.1176 23 8 2.1416 -3.6465 -0.1016 24 1 -0.3634 -0.1168 1.0210 25 1 -0.3633 0.9427 -0.4093 26 1 -0.3634 -0.8258 -0.6117 27 1 1.6874 2.1430 0.0004 28 1 4.1660 2.0683 -0.0096 29 1 6.0771 -0.9934 -0.0107 30 1 6.1582 1.6836 -0.9073 31 1 6.1651 1.6877 0.8727 32 1 7.6607 -0.9669 1.2315 33 1 9.3040 -0.2836 1.2230 34 1 8.0026 0.5389 2.1169 35 1 7.9847 0.5299 -2.1615 36 1 9.2936 -0.2887 -1.2750 37 1 7.6503 -0.9722 -1.2670 38 1 11.6595 0.7943 -0.0363 39 1 1.6162 -4.4582 -0.0925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600459923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:26 Heat of formation + Delta-G solvation = -54.937272 kcal Electronic energy + Delta-G solvation = -21402.852329 eV Core-core repulsion = 18117.425818 eV Total energy + Delta-G solvation = -3285.426511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80739 -39.46352 -37.13096 -36.24615 -34.39909 -32.90247 -31.61388 -30.32404 -27.30446 -25.75026 -25.57227 -24.68912 -24.42604 -22.39057 -20.96754 -18.90296 -18.20525 -17.67320 -17.00352 -15.96896 -15.87898 -15.40915 -14.83349 -14.62080 -14.38216 -13.90240 -13.55745 -13.45357 -13.13549 -12.84258 -12.67536 -12.51607 -12.30861 -11.85817 -11.55870 -11.49599 -11.23367 -10.95401 -10.78115 -10.48864 -10.44833 -10.23455 -9.88453 -9.73392 -9.48948 -9.47440 -9.34470 -8.85875 -8.43914 -7.32146 -6.07205 -4.18870 0.66407 1.51715 2.49151 2.86046 3.25001 3.30610 3.32054 3.56995 3.97958 4.34297 4.60993 4.90464 5.01508 5.10536 5.19352 5.30401 5.58487 5.71676 5.74315 5.95480 6.06007 6.09938 6.12146 6.28992 6.39357 6.39667 6.61734 6.69007 6.82917 6.92261 6.96865 7.19148 7.35114 7.51603 7.63076 7.77592 7.96083 7.98299 8.08450 8.29036 8.38553 8.81023 9.47376 10.93991 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.003650 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.809566 B = 7670.297370 C = 8283.572840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.199 4.199 5 C 0.403 3.597 6 N -0.705 5.705 7 C 0.135 3.865 8 C 0.059 3.941 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.511 4.511 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.883 5.883 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.508 5.508 20 C 0.130 3.870 21 C 0.543 3.457 22 O -0.507 6.507 23 O -0.492 6.492 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.406 0.594 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.009 0.991 38 H 0.261 0.739 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 -2.692 -0.166 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.151 4.151 3 C -0.071 4.071 4 C -0.225 4.225 5 C 0.162 3.838 6 N -0.335 5.335 7 C 0.011 3.989 8 C 0.058 3.942 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.521 5.521 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.228 5.228 20 C -0.007 4.007 21 C 0.387 3.613 22 O -0.396 6.396 23 O -0.302 6.302 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.244 0.756 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -14.611 -3.036 -0.144 14.923 hybrid contribution 0.132 0.800 0.026 0.811 sum -14.478 -2.236 -0.118 14.650 Atomic orbital electron populations 1.20870 0.89612 1.02679 1.02983 1.20402 0.97605 0.91921 1.05220 1.21183 0.93205 0.97531 0.95156 1.21817 0.95153 0.98212 1.07306 1.18465 0.86493 0.88335 0.90508 1.45147 1.00371 1.11121 1.76850 1.21871 0.93623 0.83728 0.99633 1.18320 0.87184 0.95601 0.93076 1.21827 1.03592 0.96160 0.97334 1.21827 1.03573 0.96156 0.97350 1.20897 0.91004 0.91399 1.51603 0.92514 1.24879 0.97731 0.96118 0.94682 1.69798 1.08918 1.23410 1.49988 0.86631 0.78991 0.83585 0.78620 1.20278 1.21290 1.20281 1.67102 1.06726 1.29906 1.19078 1.19284 0.88963 0.89769 1.02662 1.20673 0.84755 0.83986 0.71896 1.90836 1.14770 1.87573 1.46417 1.84749 1.44566 1.16466 1.84388 0.91305 0.92415 0.89530 0.84247 0.84058 0.75611 0.92868 0.92871 0.97237 0.89594 0.95484 0.95476 0.89608 0.97233 0.92843 0.73437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 8.72 36.01 0.31 -0.84 16 2 C -0.14 -1.92 5.93 -104.07 -0.62 -2.54 16 3 C -0.05 -0.56 9.82 -39.36 -0.39 -0.94 16 4 C -0.20 -2.85 9.33 -39.10 -0.36 -3.21 16 5 C 0.40 6.75 7.65 -155.21 -1.19 5.56 16 6 N -0.70 -12.47 5.13 -60.40 -0.31 -12.78 16 7 C 0.13 2.54 3.72 -4.04 -0.02 2.53 16 8 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 9 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 10 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 11 C -0.51 -12.71 8.01 -34.44 -0.28 -12.98 16 12 H 0.06 1.39 7.74 -52.48 -0.41 0.98 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 14 N -0.88 -23.13 9.35 55.43 0.52 -22.61 16 15 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.51 -8.65 10.16 -9.01 -0.09 -8.74 16 20 C 0.13 1.99 6.74 -83.05 -0.56 1.43 16 21 C 0.54 7.50 8.26 34.76 0.29 7.79 16 22 O -0.51 -7.13 14.08 -19.21 -0.27 -7.40 16 23 O -0.49 -5.82 13.25 -40.45 -0.54 -6.35 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 26 H 0.09 1.04 5.84 -51.93 -0.30 0.74 16 27 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.14 1.87 6.70 -52.49 -0.35 1.52 16 29 H 0.41 7.44 6.29 -40.82 -0.26 7.18 16 30 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 32 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 33 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 37 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.41 2.50 9.11 45.56 0.42 2.92 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -28.08 319.04 -7.59 -35.67 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.31 Total: 8.03 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.38 Total: -5.63 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.12 Total: -44.13 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.81 Total: -13.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.08 -7.59 -35.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600459923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.272 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds