Wall clock time and date at job start Tue Mar 31 2020 00:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38834 * 120.39365 * 2 1 4 4 C 1.38241 * 118.58715 * 180.26837 * 3 2 1 5 5 C 1.39524 * 119.29628 * 359.74644 * 4 3 2 6 6 N 1.38973 * 119.63713 * 180.02562 * 5 4 3 7 7 C 1.46503 * 119.99778 * 359.97124 * 6 5 4 8 8 C 1.53007 * 109.47174 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47047 * 300.00250 * 8 7 6 10 10 C 1.53003 * 109.46866 * 60.00017 * 8 7 6 11 11 C 1.50698 * 109.47225 * 179.97438 * 8 7 6 12 12 H 1.08007 * 119.99848 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99950 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00266 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00166 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47124 * 59.99335 * 15 13 11 17 17 H 1.48496 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46653 * 299.99812 * 15 13 11 19 19 N 1.32041 * 120.72818 * 359.97438 * 5 4 3 20 20 C 1.32900 * 121.52795 * 0.02562 * 19 5 4 21 21 C 1.48050 * 119.67929 * 179.97438 * 20 19 5 22 22 O 1.21431 * 120.00219 * 174.47156 * 21 20 19 23 23 O 1.34686 * 120.00280 * 354.47228 * 21 20 19 24 24 H 1.08999 * 109.47395 * 263.47625 * 1 2 3 25 25 H 1.09003 * 109.46935 * 23.47253 * 1 2 3 26 26 H 1.09000 * 109.47312 * 143.47191 * 1 2 3 27 27 H 1.07995 * 120.70341 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.35372 * 179.76683 * 4 3 2 29 29 H 0.96996 * 120.00306 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47139 * 300.00052 * 7 6 5 31 31 H 1.08998 * 109.47197 * 60.00593 * 7 6 5 32 32 H 1.09003 * 109.47031 * 59.99494 * 9 8 7 33 33 H 1.08997 * 109.47452 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46809 * 299.99972 * 9 8 7 35 35 H 1.08995 * 109.46944 * 59.99936 * 10 8 7 36 36 H 1.09000 * 109.46560 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.47415 * 299.99998 * 10 8 7 38 38 H 0.96998 * 120.00111 * 180.02562 * 14 13 11 39 39 H 0.96702 * 117.00403 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1975 0.0000 4 6 3.5911 1.1540 -0.0057 5 6 4.2352 -0.0837 -0.0058 6 7 5.6239 -0.1358 -0.0110 7 6 6.4034 1.1046 -0.0169 8 6 7.8962 0.7690 -0.0224 9 6 8.2407 -0.0440 1.2271 10 6 8.2302 -0.0492 -1.2714 11 6 8.6980 2.0449 -0.0291 12 1 8.1933 2.9998 -0.0289 13 6 10.0757 1.9933 -0.0343 14 7 10.6902 0.8305 -0.0330 15 14 11.0697 3.5749 -0.0419 16 1 10.7449 4.3694 1.1699 17 1 12.5184 3.2491 -0.0474 18 1 10.7356 4.3636 -1.2550 19 7 3.5397 -1.2062 -0.0001 20 6 2.2108 -1.2003 0.0054 21 6 1.4720 -2.4833 0.0112 22 8 0.2624 -2.4870 0.1176 23 8 2.1416 -3.6465 -0.1016 24 1 -0.3634 -0.1168 1.0210 25 1 -0.3633 0.9427 -0.4093 26 1 -0.3634 -0.8258 -0.6117 27 1 1.6874 2.1430 0.0004 28 1 4.1660 2.0683 -0.0096 29 1 6.0771 -0.9934 -0.0107 30 1 6.1582 1.6836 -0.9073 31 1 6.1651 1.6877 0.8727 32 1 7.6607 -0.9669 1.2315 33 1 9.3040 -0.2836 1.2230 34 1 8.0026 0.5389 2.1169 35 1 7.9847 0.5299 -2.1615 36 1 9.2936 -0.2887 -1.2750 37 1 7.6503 -0.9722 -1.2670 38 1 11.6595 0.7943 -0.0363 39 1 1.6162 -4.4582 -0.0925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600459923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:25 Heat of formation + Delta-G solvation = -71.563200 kcal Electronic energy + Delta-G solvation = -21403.573283 eV Core-core repulsion = 18117.425818 eV Total energy + Delta-G solvation = -3286.147466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87446 -40.55547 -38.65123 -37.26332 -35.81906 -34.11751 -33.13800 -31.64857 -28.45396 -27.56978 -27.36494 -26.08309 -25.62907 -23.42028 -22.15899 -20.49596 -19.31596 -18.91530 -18.15654 -17.67542 -16.93462 -16.67761 -16.47793 -15.76501 -15.65949 -15.35290 -14.82748 -14.69563 -14.35799 -14.09056 -14.02805 -13.80822 -13.37822 -13.18945 -13.07069 -12.92443 -12.68822 -12.59350 -12.52649 -12.28129 -12.10472 -11.53249 -11.46690 -11.16997 -10.90157 -10.76801 -10.70789 -10.49523 -10.35540 -8.56326 -7.99021 -6.15872 -0.41543 0.44413 1.43047 1.47571 1.48972 1.54745 1.89889 2.30167 2.51447 2.85780 3.25274 3.55700 3.88819 4.02157 4.12229 4.25066 4.41087 4.55574 4.56572 4.72403 4.82403 4.89731 4.94271 5.03976 5.07148 5.14855 5.18563 5.20679 5.30033 5.43727 5.48386 5.66480 5.67806 5.69409 6.00178 6.12386 6.23266 6.43426 6.64186 6.88452 6.93295 7.16439 7.52636 8.99939 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.003650 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.809566 B = 7670.297370 C = 8283.572840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.138 4.138 3 C -0.034 4.034 4 C -0.202 4.202 5 C 0.382 3.618 6 N -0.713 5.713 7 C 0.153 3.847 8 C 0.051 3.949 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.523 4.523 12 H 0.058 0.942 13 C 0.024 3.976 14 N -0.904 5.904 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.291 1.291 18 H -0.274 1.274 19 N -0.531 5.531 20 C 0.102 3.898 21 C 0.545 3.455 22 O -0.514 6.514 23 O -0.498 6.498 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.180 0.820 28 H 0.152 0.848 29 H 0.400 0.600 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.058 0.942 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.258 0.742 39 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 -1.517 -0.181 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.059 4.059 4 C -0.227 4.227 5 C 0.142 3.858 6 N -0.345 5.345 7 C 0.029 3.971 8 C 0.051 3.949 9 C -0.178 4.178 10 C -0.178 4.178 11 C -0.562 4.562 12 H 0.076 0.924 13 C -0.176 4.176 14 N -0.543 5.543 15 Si 0.774 3.226 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.199 1.199 19 N -0.252 5.252 20 C -0.033 4.033 21 C 0.388 3.612 22 O -0.404 6.404 23 O -0.310 6.310 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.198 0.802 28 H 0.170 0.830 29 H 0.236 0.764 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -16.647 -1.882 -0.160 16.754 hybrid contribution 0.636 0.373 0.029 0.738 sum -16.011 -1.509 -0.131 16.082 Atomic orbital electron populations 1.20886 0.87833 1.03835 1.03194 1.20810 0.98886 0.91645 1.03108 1.21631 0.92410 0.98827 0.93070 1.22028 0.96227 0.97599 1.06895 1.18653 0.85994 0.89346 0.91763 1.44919 1.00943 1.10075 1.78529 1.21484 0.91439 0.84235 0.99893 1.18332 0.89360 0.94592 0.92665 1.21663 1.01924 0.96860 0.97358 1.21662 1.01899 0.96858 0.97375 1.21264 0.91484 0.92489 1.50932 0.92372 1.25530 0.98817 0.98405 0.94814 1.69944 1.08717 1.24814 1.50828 0.85781 0.77462 0.80713 0.78629 1.19910 1.21657 1.19909 1.67003 1.07770 1.30568 1.19833 1.19697 0.88680 0.91298 1.03657 1.20531 0.84548 0.84224 0.71847 1.90831 1.14819 1.87795 1.46951 1.84699 1.45221 1.17176 1.83919 0.90897 0.89588 0.90563 0.80230 0.83026 0.76383 0.92580 0.92595 0.95727 0.92336 0.95849 0.95830 0.92353 0.95723 0.93267 0.70811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 8.72 71.24 0.62 -1.29 16 2 C -0.14 -3.31 5.93 -19.51 -0.12 -3.43 16 3 C -0.03 -0.72 9.82 22.41 0.22 -0.50 16 4 C -0.20 -5.33 9.33 22.58 0.21 -5.12 16 5 C 0.38 12.40 7.65 133.27 1.02 13.42 16 6 N -0.71 -24.81 5.13 -345.01 -1.77 -26.58 16 7 C 0.15 5.65 3.72 86.38 0.32 5.97 16 8 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 9 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 10 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 11 C -0.52 -25.93 8.01 25.60 0.21 -25.72 16 12 H 0.06 2.80 7.74 -2.91 -0.02 2.78 16 13 C 0.02 1.21 5.15 84.65 0.44 1.65 16 14 N -0.90 -48.15 9.35 21.45 0.20 -47.95 16 15 Si 0.95 41.00 29.54 68.60 2.03 43.02 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 N -0.53 -17.73 10.16 -182.41 -1.85 -19.59 16 20 C 0.10 3.00 6.74 41.80 0.28 3.28 16 21 C 0.54 14.45 8.26 70.43 0.58 15.03 16 22 O -0.51 -13.74 14.08 20.06 0.28 -13.46 16 23 O -0.50 -11.28 13.25 -55.95 -0.74 -12.02 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 26 H 0.08 1.66 5.84 -2.39 -0.01 1.65 16 27 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.15 3.63 6.70 -2.91 -0.02 3.61 16 29 H 0.40 14.59 6.29 -92.71 -0.58 14.01 16 30 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 31 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 32 H 0.02 0.99 6.86 -2.39 -0.02 0.97 16 33 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 37 H 0.02 0.99 6.86 -2.39 -0.02 0.97 16 38 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 39 H 0.43 4.72 9.11 -74.06 -0.67 4.05 16 Total: -1.00 -60.05 319.04 2.90 -57.15 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.16 Total: 23.53 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.92 Total: -4.11 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.42 Total: -94.11 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.46 Total: -25.48 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -60.05 2.90 -57.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600459923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.408 kcal (2) G-P(sol) polarization free energy of solvation -60.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds