Wall clock time and date at job start Tue Mar 31 2020 00:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 120.42205 * 2 1 4 4 N 1.31865 * 120.76471 * 179.74457 * 3 2 1 5 5 C 1.31880 * 121.72093 * 0.56586 * 4 3 2 6 6 C 1.50697 * 119.61503 * 179.71357 * 5 4 3 7 7 C 1.53004 * 109.46755 * 269.72159 * 6 5 4 8 8 N 1.46500 * 109.47009 * 179.97438 * 7 6 5 9 9 C 1.36938 * 120.00116 * 90.00122 * 8 7 6 10 10 H 1.08001 * 120.00105 * 9.28423 * 9 8 7 11 11 C 1.38813 * 120.00231 * 189.28098 * 9 8 7 12 12 N 1.31615 * 120.00069 * 24.74996 * 11 9 8 13 13 Si 1.86802 * 120.00050 * 204.74946 * 11 9 8 14 14 H 1.48498 * 109.47282 * 60.00191 * 13 11 9 15 15 H 1.48505 * 109.46867 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46845 * 299.99806 * 13 11 9 17 17 C 1.46502 * 120.00120 * 270.00028 * 8 7 6 18 18 C 1.50698 * 109.46967 * 89.20681 * 17 8 7 19 19 O 1.20826 * 120.00334 * 0.02562 * 18 17 8 20 20 O 1.34232 * 120.00036 * 180.02562 * 18 17 8 21 21 C 1.38189 * 120.76914 * 359.42897 * 5 4 3 22 22 C 1.50698 * 120.42045 * 180.29712 * 21 5 4 23 23 C 1.38630 * 120.41500 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47261 * 269.98468 * 1 2 3 25 25 H 1.09005 * 109.46694 * 29.98275 * 1 2 3 26 26 H 1.08994 * 109.47064 * 149.97842 * 1 2 3 27 27 H 1.08005 * 119.61945 * 0.03617 * 3 2 1 28 28 H 1.08998 * 109.47672 * 29.71930 * 6 5 4 29 29 H 1.09003 * 109.47503 * 149.72645 * 6 5 4 30 30 H 1.08999 * 109.47578 * 300.00157 * 7 6 5 31 31 H 1.09001 * 109.47011 * 60.00459 * 7 6 5 32 32 H 0.97001 * 120.00661 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47313 * 209.20415 * 17 8 7 34 34 H 1.08995 * 109.47139 * 329.20563 * 17 8 7 35 35 H 0.96694 * 117.00116 * 180.02562 * 20 18 17 36 36 H 1.09001 * 109.46639 * 90.00459 * 22 21 5 37 37 H 1.08995 * 109.47157 * 210.00226 * 22 21 5 38 38 H 1.08995 * 109.47310 * 330.00736 * 22 21 5 39 39 H 1.07997 * 120.79171 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0051 5 6 4.2257 0.0822 -0.0008 6 6 5.7313 0.1466 -0.0012 7 6 6.2404 0.1686 -1.4439 8 7 7.7040 0.2318 -1.4443 9 6 8.4393 -0.9234 -1.4445 10 1 7.9505 -1.8746 -1.5952 11 6 9.8129 -0.8720 -1.2510 12 7 10.3489 0.1416 -0.6048 13 14 10.9006 -2.2413 -1.9077 14 1 10.7491 -2.3297 -3.3823 15 1 12.3178 -1.9519 -1.5716 16 1 10.4994 -3.5311 -1.2905 17 6 8.3811 1.5310 -1.4445 18 6 8.5962 1.9856 -0.0239 19 8 8.2227 1.2950 0.8945 20 8 9.2027 3.1577 0.2212 21 6 3.5948 -1.1473 -0.0007 22 6 4.4026 -2.4195 -0.0007 23 6 2.2088 -1.1955 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6676 2.1276 0.0006 28 1 6.0564 1.0512 0.5126 29 1 6.1325 -0.7271 0.5124 30 1 5.9153 -0.7360 -1.9578 31 1 5.8392 1.0423 -1.9574 32 1 11.3087 0.1775 -0.4692 33 1 9.3443 1.4386 -1.9462 34 1 7.7660 2.2611 -1.9705 35 1 9.3186 3.4066 1.1483 36 1 4.5973 -2.7261 1.0270 37 1 3.8460 -3.2032 -0.5145 38 1 5.3486 -2.2491 -0.5145 39 1 1.6887 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600619709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:25 Heat of formation + Delta-G solvation = -63.037925 kcal Electronic energy + Delta-G solvation = -21989.869175 eV Core-core repulsion = 18704.091392 eV Total energy + Delta-G solvation = -3285.777782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38359 -40.50616 -37.84056 -36.22944 -35.42196 -34.48361 -33.44139 -31.29544 -29.11738 -28.28329 -27.51804 -25.49362 -23.82510 -22.91193 -21.81651 -21.40234 -18.82413 -18.43651 -17.81620 -17.46028 -16.96847 -16.59111 -15.96535 -15.60239 -15.45159 -15.25237 -15.11208 -14.25538 -14.09589 -13.94425 -13.87207 -13.56755 -13.41409 -13.31334 -13.13972 -13.13036 -12.82953 -12.72982 -12.46460 -12.19928 -12.09261 -11.94577 -11.72132 -11.52961 -11.03417 -10.52741 -10.43394 -10.25697 -9.54562 -9.00676 -7.95138 -5.22552 0.19456 0.40753 1.50813 1.53774 1.60409 2.08928 2.49888 2.82087 2.82781 3.27987 3.36995 3.63329 3.88960 3.95992 4.04535 4.12803 4.34902 4.42769 4.58714 4.64412 4.66992 4.72126 4.77412 4.87706 4.89456 4.91772 5.08574 5.16991 5.20139 5.22694 5.29608 5.39813 5.42625 5.53381 5.64903 5.91797 6.19034 6.20923 7.02656 7.16477 7.63727 7.82709 8.17252 9.14826 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.005143 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.311133 B = 5443.420111 C = 6413.910344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.143 4.143 3 C 0.076 3.924 4 N -0.512 5.512 5 C 0.109 3.891 6 C -0.071 4.071 7 C 0.162 3.838 8 N -0.579 5.579 9 C -0.257 4.257 10 H 0.085 0.915 11 C -0.050 4.050 12 N -0.930 5.930 13 Si 0.971 3.029 14 H -0.274 1.274 15 H -0.300 1.300 16 H -0.282 1.282 17 C 0.186 3.814 18 C 0.481 3.519 19 O -0.548 6.548 20 O -0.537 6.537 21 C -0.138 4.138 22 C -0.110 4.110 23 C -0.080 4.080 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.173 0.827 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 -0.428 -1.043 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.145 4.145 3 C -0.081 4.081 4 N -0.220 5.220 5 C -0.028 4.028 6 C -0.111 4.111 7 C 0.036 3.964 8 N -0.299 5.299 9 C -0.386 4.386 10 H 0.103 0.897 11 C -0.244 4.244 12 N -0.577 5.577 13 Si 0.799 3.201 14 H -0.200 1.200 15 H -0.226 1.226 16 H -0.208 1.208 17 C 0.056 3.944 18 C 0.322 3.678 19 O -0.437 6.437 20 O -0.348 6.348 21 C -0.140 4.140 22 C -0.168 4.168 23 C -0.106 4.106 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.190 0.810 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.398 0.069 -1.201 16.442 hybrid contribution 0.938 -1.037 1.037 1.741 sum -15.459 -0.968 -0.164 15.490 Atomic orbital electron populations 1.20740 0.87432 1.04257 1.03405 1.21266 0.99321 0.93317 1.00555 1.23100 0.89088 0.99168 0.96755 1.67456 1.09724 1.31763 1.13087 1.21281 0.96312 0.88797 0.96414 1.20993 0.87806 1.01712 1.00626 1.20930 0.82317 1.00140 0.93036 1.44432 1.01041 1.01683 1.82713 1.19563 0.89671 0.87381 1.41989 0.89734 1.25453 0.98598 1.00501 0.99856 1.69985 1.10839 1.34831 1.42038 0.85279 0.77176 0.78803 0.78792 1.20041 1.22624 1.20788 1.20431 0.99410 0.86349 0.88174 1.25362 0.71067 0.76106 0.95220 1.90469 1.50594 1.54676 1.47980 1.84559 1.74685 1.40052 1.35541 1.20940 0.95599 0.96187 1.01250 1.20791 0.99526 0.93677 1.02758 1.21705 0.92332 0.99670 0.96846 0.90033 0.90068 0.90051 0.81021 0.93234 0.92391 0.92064 0.93001 0.94067 0.88544 0.90185 0.74408 0.91023 0.88995 0.92261 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.04 71.24 0.72 -0.56 16 2 C -0.14 -3.10 5.90 -19.77 -0.12 -3.22 16 3 C 0.08 2.05 10.86 84.68 0.92 2.97 16 4 N -0.51 -18.20 10.27 -183.88 -1.89 -20.09 16 5 C 0.11 3.99 6.03 42.54 0.26 4.24 16 6 C -0.07 -3.03 4.39 29.85 0.13 -2.90 16 7 C 0.16 6.85 5.56 86.38 0.48 7.33 16 8 N -0.58 -28.44 2.09 -706.34 -1.48 -29.92 16 9 C -0.26 -13.58 9.70 84.03 0.82 -12.77 16 10 H 0.08 4.31 7.93 -2.91 -0.02 4.28 16 11 C -0.05 -2.68 4.89 84.86 0.41 -2.26 16 12 N -0.93 -53.05 9.02 21.65 0.20 -52.85 16 13 Si 0.97 44.05 29.62 68.60 2.03 46.09 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.19 8.87 5.58 85.63 0.48 9.35 16 18 C 0.48 23.88 6.32 71.24 0.45 24.33 16 19 O -0.55 -30.67 14.42 21.96 0.32 -30.35 16 20 O -0.54 -22.57 13.42 -51.44 -0.69 -23.26 16 21 C -0.14 -4.13 5.90 -19.77 -0.12 -4.25 16 22 C -0.11 -3.02 9.21 71.24 0.66 -2.36 16 23 C -0.08 -1.86 9.55 22.47 0.21 -1.64 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 26 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 27 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.05 2.43 6.30 -2.39 -0.02 2.41 16 29 H 0.06 2.69 6.69 -2.39 -0.02 2.67 16 30 H 0.06 2.44 7.30 -2.39 -0.02 2.43 16 31 H 0.05 2.08 7.90 -2.39 -0.02 2.06 16 32 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.10 4.96 6.29 -2.39 -0.02 4.95 16 34 H 0.08 3.29 7.90 -2.39 -0.02 3.27 16 35 H 0.40 13.43 9.10 -74.06 -0.67 12.75 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 38 H 0.06 1.92 5.87 -2.39 -0.01 1.90 16 39 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -70.17 324.36 4.18 -65.99 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.39 Total: 26.13 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.30 Total: 18.26 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -3.17 Total: -102.85 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.37 Total: -53.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.17 4.18 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600619709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds