Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31657 * 119.74163 * 2 1 4 4 C 1.32616 * 121.63802 * 180.02562 * 3 2 1 5 5 N 1.38434 * 119.52901 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99948 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47249 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46946 * 300.00207 * 7 6 5 9 9 C 1.52996 * 109.46767 * 59.99958 * 7 6 5 10 10 C 1.50693 * 109.47008 * 180.02562 * 7 6 5 11 11 H 1.07999 * 120.00552 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00218 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99577 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00338 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47367 * 89.99693 * 14 12 10 16 16 H 1.48500 * 109.46651 * 209.99440 * 14 12 10 17 17 H 1.48495 * 109.46814 * 329.99249 * 14 12 10 18 18 C 1.39407 * 120.93783 * 359.97438 * 4 3 2 19 19 C 1.36838 * 119.38475 * 359.76047 * 18 4 3 20 20 C 1.39621 * 119.74512 * 180.02562 * 2 1 3 21 21 C 1.47404 * 120.48066 * 359.97438 * 20 2 1 22 22 O 1.21519 * 120.00128 * 354.00282 * 21 20 2 23 23 O 1.34750 * 120.00435 * 174.00624 * 21 20 2 24 24 H 1.09001 * 109.47362 * 263.44068 * 1 2 3 25 25 H 1.08998 * 109.46870 * 23.44538 * 1 2 3 26 26 H 1.09003 * 109.46782 * 143.44485 * 1 2 3 27 27 H 0.96996 * 120.00091 * 359.97438 * 5 4 3 28 28 H 1.09002 * 109.46958 * 300.00204 * 6 5 4 29 29 H 1.08999 * 109.47114 * 59.99696 * 6 5 4 30 30 H 1.08998 * 109.47393 * 60.00039 * 8 7 6 31 31 H 1.09003 * 109.46906 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.47074 * 299.99294 * 8 7 6 33 33 H 1.08998 * 109.47638 * 60.00156 * 9 7 6 34 34 H 1.09003 * 109.47253 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47399 * 299.99854 * 9 7 6 36 36 H 0.96998 * 119.99739 * 180.02562 * 13 12 10 37 37 H 1.07997 * 120.31311 * 180.02562 * 18 4 3 38 38 H 1.07995 * 120.76075 * 180.28008 * 19 18 4 39 39 H 0.96696 * 117.00383 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1602 1.1431 0.0000 4 6 3.4856 1.1870 -0.0005 5 7 4.1277 2.4135 0.0001 6 6 5.5914 2.4740 -0.0011 7 6 6.0414 3.9363 -0.0008 8 6 5.5011 4.6364 -1.2493 9 6 5.5030 4.6353 1.2492 10 6 7.5471 3.9985 -0.0026 11 1 8.1253 3.0863 -0.0034 12 6 8.1867 5.2200 -0.0021 13 7 7.4826 6.3308 -0.0006 14 14 10.0531 5.2971 -0.0051 15 1 10.5454 5.3191 -1.4059 16 1 10.4986 6.5282 0.6957 17 1 10.5987 4.1053 0.6928 18 6 4.2415 0.0157 -0.0005 19 6 3.6037 -1.1950 0.0050 20 6 2.1998 -1.2122 -0.0005 21 6 1.4678 -2.4917 -0.0005 22 8 0.2576 -2.4994 0.1099 23 8 2.1404 -3.6529 -0.1229 24 1 -0.3634 -0.1174 1.0209 25 1 -0.3633 0.9428 -0.4089 26 1 -0.3633 -0.8255 -0.6121 27 1 3.6084 3.2327 0.0004 28 1 5.9763 1.9748 0.8882 29 1 5.9749 1.9763 -0.8918 30 1 4.4120 4.5914 -1.2484 31 1 5.8221 5.6781 -1.2493 32 1 5.8847 4.1384 -2.1397 33 1 5.8879 4.1365 2.1387 34 1 5.8240 5.6770 1.2497 35 1 4.4140 4.5903 1.2500 36 1 7.9325 7.1902 -0.0007 37 1 5.3204 0.0632 -0.0005 38 1 4.1673 -2.1162 0.0096 39 1 1.6173 -4.4660 -0.1172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610560239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = -60.889575 kcal Electronic energy + Delta-G solvation = -21323.364393 eV Core-core repulsion = 18037.679770 eV Total energy + Delta-G solvation = -3285.684623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74802 -39.47028 -37.22300 -36.14458 -34.38052 -32.84983 -31.76667 -30.15822 -27.73712 -25.81289 -25.80282 -25.11356 -23.45673 -22.44290 -21.07748 -18.77839 -18.19932 -17.54723 -17.10086 -16.10325 -15.76237 -15.73519 -14.85120 -14.57577 -14.32245 -13.87750 -13.61683 -13.56044 -13.00353 -12.88902 -12.71383 -12.44099 -12.27497 -11.90618 -11.54511 -11.52275 -11.28922 -11.00558 -10.77668 -10.54865 -10.29323 -10.24014 -10.10749 -9.73983 -9.53606 -9.39358 -9.36339 -8.90677 -8.48138 -7.52708 -6.11424 -4.23136 0.88386 1.45566 2.66962 3.05550 3.21532 3.29332 3.30740 3.47361 3.97406 4.31293 4.58348 4.80584 5.07457 5.11378 5.15478 5.46835 5.69609 5.75952 5.77073 5.90819 6.03921 6.13286 6.16097 6.17635 6.32433 6.47919 6.58858 6.66369 6.75894 6.85560 6.90284 7.13810 7.31183 7.45504 7.59165 7.82951 7.90692 7.92291 8.02892 8.24563 8.32676 8.76915 9.43479 10.89935 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.003483 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.052278 B = 8038.171747 C = 8601.579335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.255 3.745 3 N -0.561 5.561 4 C 0.444 3.556 5 N -0.688 5.688 6 C 0.128 3.872 7 C 0.059 3.941 8 C -0.133 4.133 9 C -0.133 4.133 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.883 5.883 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.260 4.260 19 C 0.025 3.975 20 C -0.278 4.278 21 C 0.539 3.461 22 O -0.526 6.526 23 O -0.518 6.518 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.408 0.592 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.008 0.992 36 H 0.261 0.739 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 -13.317 -0.217 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.281 5.281 4 C 0.203 3.797 5 N -0.313 5.313 6 C 0.005 3.995 7 C 0.058 3.942 8 C -0.190 4.190 9 C -0.190 4.190 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.285 4.285 19 C 0.000 4.000 20 C -0.285 4.285 21 C 0.386 3.614 22 O -0.417 6.417 23 O -0.329 6.329 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.246 0.754 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.635 -11.891 -0.186 14.697 hybrid contribution 1.112 -0.880 0.024 1.418 sum -7.523 -12.771 -0.162 14.823 Atomic orbital electron populations 1.21074 0.88025 1.03760 1.03957 1.21069 0.96583 0.85749 0.85338 1.67286 1.07510 1.28714 1.24596 1.18812 0.88091 0.87319 0.85433 1.45316 1.08216 1.04513 1.73241 1.22013 0.75308 1.01937 1.00206 1.18334 0.95687 0.87067 0.93112 1.21845 0.95280 1.04546 0.97370 1.21843 0.95287 1.04545 0.97365 1.20922 0.89746 0.92634 1.51634 0.92385 1.24887 0.98303 0.95636 0.94610 1.69806 1.34875 0.97449 1.49975 0.86551 0.85452 0.77603 0.78147 1.20658 1.21205 1.19885 1.21186 1.01631 0.91450 1.14249 1.21208 0.92584 0.98210 0.88018 1.19301 0.94166 0.90817 1.24221 1.20577 0.85197 0.83808 0.71796 1.90816 1.15304 1.87627 1.47987 1.84581 1.45476 1.17137 1.85755 0.89901 0.91057 0.88366 0.75415 0.92333 0.92335 0.97299 0.89470 0.95384 0.95385 0.89468 0.97294 0.92848 0.84159 0.84120 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.87 36.01 0.32 -1.10 16 2 C 0.26 3.82 6.82 -82.15 -0.56 3.26 16 3 N -0.56 -9.30 10.30 -8.37 -0.09 -9.38 16 4 C 0.44 7.34 7.63 -155.29 -1.19 6.15 16 5 N -0.69 -11.85 5.11 -60.45 -0.31 -12.16 16 6 C 0.13 2.37 3.70 -4.04 -0.01 2.36 16 7 C 0.06 1.28 0.50 -155.67 -0.08 1.20 16 8 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 9 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 10 C -0.51 -12.57 8.01 -34.44 -0.28 -12.85 16 11 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 13 N -0.88 -22.91 9.35 55.43 0.52 -22.39 16 14 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 18 C -0.26 -3.79 9.25 -39.65 -0.37 -4.15 16 19 C 0.02 0.32 9.67 -39.27 -0.38 -0.06 16 20 C -0.28 -3.86 5.89 -104.83 -0.62 -4.47 16 21 C 0.54 6.75 8.20 34.46 0.28 7.03 16 22 O -0.53 -7.35 14.14 -19.28 -0.27 -7.62 16 23 O -0.52 -4.83 12.76 -40.63 -0.52 -5.35 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.25 5.84 -51.93 -0.30 0.95 16 27 H 0.41 7.19 6.28 -40.82 -0.26 6.93 16 28 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 29 H 0.06 1.07 7.91 -51.93 -0.41 0.65 16 30 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 35 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 36 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.14 1.90 6.66 -52.49 -0.35 1.55 16 38 H 0.14 1.48 7.71 -52.49 -0.40 1.07 16 39 H 0.41 1.87 9.11 45.56 0.42 2.28 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -27.45 318.28 -7.56 -35.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.29 Total: 8.47 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.37 Total: -6.23 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.12 Total: -43.93 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.79 Total: -12.97 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.45 -7.56 -35.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610560239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.879 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds