Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31657 * 119.74163 * 2 1 4 4 C 1.32616 * 121.63802 * 180.02562 * 3 2 1 5 5 N 1.38434 * 119.52901 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99948 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47249 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46946 * 300.00207 * 7 6 5 9 9 C 1.52996 * 109.46767 * 59.99958 * 7 6 5 10 10 C 1.50693 * 109.47008 * 180.02562 * 7 6 5 11 11 H 1.07999 * 120.00552 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00218 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99577 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00338 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47367 * 89.99693 * 14 12 10 16 16 H 1.48500 * 109.46651 * 209.99440 * 14 12 10 17 17 H 1.48495 * 109.46814 * 329.99249 * 14 12 10 18 18 C 1.39407 * 120.93783 * 359.97438 * 4 3 2 19 19 C 1.36838 * 119.38475 * 359.76047 * 18 4 3 20 20 C 1.39621 * 119.74512 * 180.02562 * 2 1 3 21 21 C 1.47404 * 120.48066 * 359.97438 * 20 2 1 22 22 O 1.21519 * 120.00128 * 354.00282 * 21 20 2 23 23 O 1.34750 * 120.00435 * 174.00624 * 21 20 2 24 24 H 1.09001 * 109.47362 * 263.44068 * 1 2 3 25 25 H 1.08998 * 109.46870 * 23.44538 * 1 2 3 26 26 H 1.09003 * 109.46782 * 143.44485 * 1 2 3 27 27 H 0.96996 * 120.00091 * 359.97438 * 5 4 3 28 28 H 1.09002 * 109.46958 * 300.00204 * 6 5 4 29 29 H 1.08999 * 109.47114 * 59.99696 * 6 5 4 30 30 H 1.08998 * 109.47393 * 60.00039 * 8 7 6 31 31 H 1.09003 * 109.46906 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.47074 * 299.99294 * 8 7 6 33 33 H 1.08998 * 109.47638 * 60.00156 * 9 7 6 34 34 H 1.09003 * 109.47253 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47399 * 299.99854 * 9 7 6 36 36 H 0.96998 * 119.99739 * 180.02562 * 13 12 10 37 37 H 1.07997 * 120.31311 * 180.02562 * 18 4 3 38 38 H 1.07995 * 120.76075 * 180.28008 * 19 18 4 39 39 H 0.96696 * 117.00383 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1602 1.1431 0.0000 4 6 3.4856 1.1870 -0.0005 5 7 4.1277 2.4135 0.0001 6 6 5.5914 2.4740 -0.0011 7 6 6.0414 3.9363 -0.0008 8 6 5.5011 4.6364 -1.2493 9 6 5.5030 4.6353 1.2492 10 6 7.5471 3.9985 -0.0026 11 1 8.1253 3.0863 -0.0034 12 6 8.1867 5.2200 -0.0021 13 7 7.4826 6.3308 -0.0006 14 14 10.0531 5.2971 -0.0051 15 1 10.5454 5.3191 -1.4059 16 1 10.4986 6.5282 0.6957 17 1 10.5987 4.1053 0.6928 18 6 4.2415 0.0157 -0.0005 19 6 3.6037 -1.1950 0.0050 20 6 2.1998 -1.2122 -0.0005 21 6 1.4678 -2.4917 -0.0005 22 8 0.2576 -2.4994 0.1099 23 8 2.1404 -3.6529 -0.1229 24 1 -0.3634 -0.1174 1.0209 25 1 -0.3633 0.9428 -0.4089 26 1 -0.3633 -0.8255 -0.6121 27 1 3.6084 3.2327 0.0004 28 1 5.9763 1.9748 0.8882 29 1 5.9749 1.9763 -0.8918 30 1 4.4120 4.5914 -1.2484 31 1 5.8221 5.6781 -1.2493 32 1 5.8847 4.1384 -2.1397 33 1 5.8879 4.1365 2.1387 34 1 5.8240 5.6770 1.2497 35 1 4.4140 4.5903 1.2500 36 1 7.9325 7.1902 -0.0007 37 1 5.3204 0.0632 -0.0005 38 1 4.1673 -2.1162 0.0096 39 1 1.6173 -4.4660 -0.1172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610560239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = -76.775676 kcal Electronic energy + Delta-G solvation = -21324.053266 eV Core-core repulsion = 18037.679770 eV Total energy + Delta-G solvation = -3286.373496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81521 -40.51112 -38.71428 -37.05470 -35.84856 -33.93771 -33.38778 -31.53963 -28.79551 -27.59523 -27.47104 -26.74503 -24.61021 -23.49869 -22.23928 -20.41284 -19.24154 -18.76984 -18.07408 -17.69255 -17.12183 -16.73244 -16.59421 -15.81488 -15.53322 -15.17015 -14.89815 -14.85724 -14.36078 -14.09809 -14.00270 -13.71850 -13.58870 -13.16568 -13.09349 -12.94351 -12.71346 -12.56692 -12.40518 -12.30616 -12.11430 -11.57797 -11.27222 -11.21225 -11.19103 -10.72644 -10.61210 -10.52241 -10.37429 -8.75787 -8.01247 -6.17908 -0.21479 0.36157 1.45115 1.48542 1.55594 1.64953 2.06660 2.30527 2.49351 2.84961 3.23481 3.47135 3.79375 3.97139 4.03519 4.32847 4.50641 4.52889 4.62544 4.70053 4.77576 4.78564 4.91596 5.03819 5.04789 5.11199 5.14321 5.17194 5.17552 5.41608 5.53492 5.64012 5.68065 5.74016 5.95739 6.10345 6.20295 6.41077 6.55821 6.88381 7.09986 7.11606 7.50822 8.97972 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.003483 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.052278 B = 8038.171747 C = 8601.579335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.237 3.763 3 N -0.579 5.579 4 C 0.427 3.573 5 N -0.695 5.695 6 C 0.146 3.854 7 C 0.052 3.948 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.024 3.976 13 N -0.904 5.904 14 Si 0.947 3.053 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.269 1.269 18 C -0.265 4.265 19 C 0.035 3.965 20 C -0.280 4.280 21 C 0.546 3.454 22 O -0.542 6.542 23 O -0.508 6.508 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.404 0.596 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.258 0.742 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -15.606 -0.225 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.300 5.300 4 C 0.188 3.812 5 N -0.322 5.322 6 C 0.023 3.977 7 C 0.051 3.949 8 C -0.180 4.180 9 C -0.180 4.180 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.543 5.543 14 Si 0.774 3.226 15 H -0.206 1.206 16 H -0.216 1.216 17 H -0.193 1.193 18 C -0.290 4.290 19 C 0.010 3.990 20 C -0.287 4.287 21 C 0.393 3.607 22 O -0.435 6.435 23 O -0.321 6.321 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.240 0.760 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.168 0.832 38 H 0.188 0.812 39 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -8.720 -14.241 -0.195 16.700 hybrid contribution 1.054 -0.307 0.022 1.098 sum -7.666 -14.549 -0.173 16.446 Atomic orbital electron populations 1.21053 0.86864 1.03955 1.04264 1.21432 0.97506 0.85903 0.85600 1.67232 1.07800 1.29824 1.25119 1.18976 0.88409 0.87450 0.86343 1.45071 1.07369 1.04797 1.74926 1.21627 0.76267 0.99353 1.00460 1.18331 0.94500 0.89290 0.92753 1.21685 0.96309 1.02658 0.97358 1.21684 0.96311 1.02658 0.97358 1.21285 0.91427 0.92537 1.50905 0.92349 1.25526 1.01614 0.95621 0.94789 1.69945 1.35902 0.97602 1.50835 0.85720 0.81582 0.77380 0.77894 1.20637 1.21583 1.19314 1.21345 1.02092 0.91346 1.14222 1.21512 0.92348 0.98792 0.86354 1.19548 0.94777 0.91394 1.22957 1.20285 0.84728 0.84242 0.71438 1.90818 1.15995 1.88025 1.48691 1.84513 1.45417 1.17303 1.84910 0.89412 0.90740 0.88262 0.75950 0.92088 0.92068 0.95599 0.92233 0.95754 0.95752 0.92230 0.95602 0.93231 0.83246 0.81180 0.70660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 8.87 71.24 0.63 -1.91 16 2 C 0.24 6.78 6.82 42.92 0.29 7.07 16 3 N -0.58 -18.70 10.30 -180.41 -1.86 -20.55 16 4 C 0.43 13.63 7.63 133.26 1.02 14.65 16 5 N -0.70 -23.39 5.11 -345.17 -1.76 -25.15 16 6 C 0.15 5.28 3.70 86.38 0.32 5.60 16 7 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 8 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 9 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 10 C -0.52 -25.62 8.01 25.60 0.21 -25.41 16 11 H 0.06 2.79 7.74 -2.91 -0.02 2.77 16 12 C 0.02 1.22 5.15 84.65 0.44 1.65 16 13 N -0.90 -47.65 9.35 21.45 0.20 -47.45 16 14 Si 0.95 40.74 29.54 68.60 2.03 42.77 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 C -0.27 -7.19 9.25 22.22 0.21 -6.98 16 19 C 0.03 0.80 9.67 22.47 0.22 1.02 16 20 C -0.28 -7.13 5.89 -20.00 -0.12 -7.25 16 21 C 0.55 12.16 8.20 70.24 0.58 12.74 16 22 O -0.54 -13.93 14.14 19.78 0.28 -13.65 16 23 O -0.51 -7.58 12.76 -56.61 -0.72 -8.30 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 2.39 5.84 -2.39 -0.01 2.38 16 27 H 0.40 14.01 6.28 -92.71 -0.58 13.43 16 28 H 0.06 2.15 7.91 -2.39 -0.02 2.13 16 29 H 0.06 2.15 7.91 -2.39 -0.02 2.14 16 30 H 0.03 1.01 6.86 -2.39 -0.02 0.99 16 31 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 35 H 0.03 1.01 6.86 -2.39 -0.02 0.99 16 36 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 37 H 0.15 3.72 6.66 -2.91 -0.02 3.70 16 38 H 0.17 2.89 7.71 -2.91 -0.02 2.87 16 39 H 0.43 2.29 9.11 -74.06 -0.67 1.62 16 Total: -1.00 -57.95 318.28 2.92 -55.03 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.16 Total: 23.52 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.92 Total: -6.19 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -3.42 Total: -93.16 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.44 Total: -21.95 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -57.95 2.92 -55.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610560239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.750 kcal (2) G-P(sol) polarization free energy of solvation -57.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds