Wall clock time and date at job start Mon Mar 30 2020 23:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00211 * 2 1 4 4 C 1.53000 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47073 * 65.00005 * 4 3 2 6 6 C 1.37098 * 119.99845 * 264.47052 * 5 4 3 7 7 H 1.07998 * 120.00157 * 138.26937 * 6 5 4 8 8 C 1.38954 * 120.00209 * 318.27157 * 6 5 4 9 9 N 1.31411 * 119.99533 * 341.88639 * 8 6 5 10 10 Si 1.86798 * 120.00328 * 161.88994 * 8 6 5 11 11 H 1.48505 * 109.47069 * 89.99375 * 10 8 6 12 12 H 1.48492 * 109.47436 * 210.00040 * 10 8 6 13 13 H 1.48502 * 109.46839 * 330.00041 * 10 8 6 14 14 C 1.34770 * 119.99953 * 84.47143 * 5 4 3 15 15 O 1.21291 * 120.00106 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99813 * 179.97438 * 14 5 4 17 17 C 1.50706 * 109.47144 * 180.02562 * 16 14 5 18 18 C 1.38671 * 120.41653 * 89.99509 * 17 16 14 19 19 C 1.38627 * 118.41812 * 179.74667 * 18 17 16 20 20 C 1.38228 * 119.16076 * 0.26457 * 19 18 17 21 21 C 1.50697 * 119.61758 * 179.97438 * 20 19 18 22 22 N 1.31854 * 120.76538 * 0.02562 * 20 19 18 23 23 C 1.31890 * 121.72420 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.46860 * 300.00249 * 1 2 3 25 25 H 1.09003 * 109.47183 * 59.99840 * 1 2 3 26 26 H 1.08992 * 109.47368 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47035 * 59.99678 * 3 2 1 28 28 H 1.08999 * 109.47052 * 300.00430 * 3 2 1 29 29 H 1.09001 * 109.46819 * 305.00261 * 4 3 2 30 30 H 1.08997 * 109.46771 * 185.00171 * 4 3 2 31 31 H 0.96999 * 119.99673 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46790 * 60.00112 * 16 14 5 33 33 H 1.09001 * 109.47168 * 300.00056 * 16 14 5 34 34 H 1.08001 * 120.79316 * 0.03591 * 18 17 16 35 35 H 1.07997 * 120.42138 * 180.23271 * 19 18 17 36 36 H 1.08997 * 109.47762 * 89.99852 * 21 20 19 37 37 H 1.09000 * 109.46994 * 209.99524 * 21 20 19 38 38 H 1.09004 * 109.47345 * 329.98967 * 21 20 19 39 39 H 1.08000 * 119.61539 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2061 -0.7862 -1.3048 7 1 3.8776 -1.3574 -2.1604 8 6 4.8622 -1.4200 -0.2566 9 7 5.5680 -0.7150 0.5988 10 14 4.7408 -3.2740 -0.0635 11 1 5.8428 -3.9234 -0.8180 12 1 4.8481 -3.6301 1.3741 13 1 3.4351 -3.7424 -0.5934 14 6 4.1542 1.3213 -2.3534 15 8 3.9500 2.5160 -2.3075 16 6 4.6076 0.6833 -3.6413 17 6 4.7298 1.7395 -4.7093 18 6 5.9269 2.4141 -4.8958 19 6 5.9948 3.3739 -5.8938 20 6 4.8733 3.6287 -6.6606 21 6 4.9354 4.6704 -7.7478 22 7 3.7495 2.9716 -6.4512 23 6 3.6486 2.0522 -5.5110 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0890 31 1 6.0257 -1.1574 1.3307 32 1 3.8790 -0.0655 -3.9519 33 1 5.5761 0.2068 -3.4895 34 1 6.7873 2.1937 -4.2814 35 1 6.9121 3.9161 -6.0696 36 1 5.2465 4.2027 -8.6819 37 1 3.9508 5.1199 -7.8769 38 1 5.6537 5.4422 -7.4710 39 1 2.7115 1.5344 -5.3692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637300710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:24 Heat of formation + Delta-G solvation = -47.546910 kcal Electronic energy + Delta-G solvation = -21754.666271 eV Core-core repulsion = 18469.560230 eV Total energy + Delta-G solvation = -3285.106041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99175 -38.54835 -36.96248 -34.74547 -33.49806 -31.94310 -31.59543 -30.05301 -28.68214 -25.97580 -25.48598 -24.54141 -23.17679 -22.10557 -20.95169 -19.06365 -16.99304 -16.31337 -16.18270 -15.76559 -15.41594 -15.34347 -14.75912 -14.44705 -14.31323 -14.15761 -13.94359 -13.45639 -12.81371 -12.77760 -12.58586 -12.11118 -12.09168 -12.01197 -11.76936 -11.38841 -11.18922 -11.07533 -10.97019 -10.82681 -10.69922 -10.37216 -10.05258 -9.41140 -9.15428 -9.09072 -8.97300 -8.62538 -8.21849 -7.46248 -6.34683 -4.06170 1.47881 1.68521 3.15200 3.25453 3.31309 3.88590 4.07290 4.18872 4.49624 4.59276 4.82462 5.00789 5.07907 5.26278 5.30886 5.47940 5.64220 5.65579 5.69539 5.71538 5.72085 5.90960 5.95369 5.99263 6.06944 6.14112 6.23633 6.32366 6.37222 6.45994 6.47624 6.70943 6.80615 7.09989 7.22469 7.47087 7.82152 8.01588 8.33305 8.37365 9.12017 9.50616 9.94030 10.69478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.005061 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.207125 B = 5531.454101 C = 6282.759480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.429 5.429 6 C -0.327 4.327 7 H 0.085 0.915 8 C 0.050 3.950 9 N -0.865 5.865 10 Si 0.914 3.086 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.475 3.525 15 O -0.605 6.605 16 C -0.081 4.081 17 C -0.097 4.097 18 C -0.062 4.062 19 C -0.172 4.172 20 C 0.106 3.894 21 C -0.098 4.098 22 N -0.488 5.488 23 C 0.111 3.889 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 2.929 -7.218 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.026 4.026 4 C -0.002 4.002 5 N -0.147 5.147 6 C -0.455 4.455 7 H 0.103 0.897 8 C -0.156 4.156 9 N -0.501 5.501 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.264 3.736 15 O -0.491 6.491 16 C -0.121 4.121 17 C -0.099 4.099 18 C -0.088 4.088 19 C -0.192 4.192 20 C -0.032 4.032 21 C -0.155 4.155 22 N -0.198 5.198 23 C -0.046 4.046 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.440 3.497 -7.507 8.633 hybrid contribution 0.446 -1.029 0.985 1.493 sum -1.993 2.467 -6.522 7.253 Atomic orbital electron populations 1.22647 0.83391 1.01735 0.98868 1.88126 1.17407 1.27772 1.95054 1.23052 0.96597 0.84287 0.98710 1.21334 0.89044 0.98841 0.90956 1.43255 1.56671 1.07318 1.07414 1.19238 1.36631 0.82116 1.07505 0.89737 1.25341 0.93691 0.99797 0.96743 1.69925 1.27624 1.36690 1.15899 0.86156 0.78822 0.83299 0.77665 1.20515 1.20891 1.19233 1.20262 0.80922 0.86274 0.86139 1.90546 1.57248 1.15354 1.85999 1.20369 1.04341 0.95851 0.91570 1.20621 0.94313 0.98145 0.96851 1.21450 0.97879 0.93832 0.95632 1.21825 0.99551 1.00100 0.97756 1.21134 0.89265 0.96213 0.96571 1.20625 1.03110 0.95974 0.95806 1.67443 1.26267 1.07176 1.18890 1.22493 0.97794 0.93608 0.90725 0.95169 0.94963 0.90407 0.94338 0.93993 0.87643 0.91309 0.92154 0.89064 0.88235 0.85081 0.85412 0.90986 0.90882 0.91148 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.72 10.44 -35.23 -0.37 -8.09 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.12 2.90 5.26 -4.04 -0.02 2.87 16 5 N -0.43 -10.56 2.45 -114.81 -0.28 -10.84 16 6 C -0.33 -8.11 8.29 -14.93 -0.12 -8.23 16 7 H 0.09 2.02 7.21 -52.49 -0.38 1.64 16 8 C 0.05 1.25 4.95 -17.47 -0.09 1.16 16 9 N -0.86 -22.61 11.66 55.50 0.65 -21.96 16 10 Si 0.91 19.58 29.59 -169.99 -5.03 14.55 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 14 C 0.48 11.27 7.59 -10.99 -0.08 11.18 16 15 O -0.61 -15.69 15.71 5.55 0.09 -15.60 16 16 C -0.08 -1.58 4.59 -29.03 -0.13 -1.71 16 17 C -0.10 -1.78 4.39 -104.48 -0.46 -2.24 16 18 C -0.06 -1.04 9.86 -39.28 -0.39 -1.43 16 19 C -0.17 -2.57 9.74 -39.44 -0.38 -2.96 16 20 C 0.11 1.63 6.78 -82.59 -0.56 1.07 16 21 C -0.10 -1.09 10.17 36.00 0.37 -0.73 16 22 N -0.49 -8.58 10.27 -9.47 -0.10 -8.68 16 23 C 0.11 1.98 10.86 -17.55 -0.19 1.79 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 2.68 5.81 -51.93 -0.30 2.37 16 30 H 0.07 1.65 7.59 -51.93 -0.39 1.26 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.09 1.64 7.66 -51.93 -0.40 1.24 16 33 H 0.10 1.90 8.05 -51.93 -0.42 1.48 16 34 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -30.61 335.05 -6.38 -36.99 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.67 Total: 4.89 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.72 Total: 3.69 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.27 Total: -41.48 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.28 Total: -23.69 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.61 -6.38 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637300710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.556 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds