Wall clock time and date at job start Mon Mar 30 2020 23:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00211 * 2 1 4 4 C 1.53000 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47073 * 65.00005 * 4 3 2 6 6 C 1.37098 * 119.99845 * 264.47052 * 5 4 3 7 7 H 1.07998 * 120.00157 * 138.26937 * 6 5 4 8 8 C 1.38954 * 120.00209 * 318.27157 * 6 5 4 9 9 N 1.31411 * 119.99533 * 341.88639 * 8 6 5 10 10 Si 1.86798 * 120.00328 * 161.88994 * 8 6 5 11 11 H 1.48505 * 109.47069 * 89.99375 * 10 8 6 12 12 H 1.48492 * 109.47436 * 210.00040 * 10 8 6 13 13 H 1.48502 * 109.46839 * 330.00041 * 10 8 6 14 14 C 1.34770 * 119.99953 * 84.47143 * 5 4 3 15 15 O 1.21291 * 120.00106 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99813 * 179.97438 * 14 5 4 17 17 C 1.50706 * 109.47144 * 180.02562 * 16 14 5 18 18 C 1.38671 * 120.41653 * 89.99509 * 17 16 14 19 19 C 1.38627 * 118.41812 * 179.74667 * 18 17 16 20 20 C 1.38228 * 119.16076 * 0.26457 * 19 18 17 21 21 C 1.50697 * 119.61758 * 179.97438 * 20 19 18 22 22 N 1.31854 * 120.76538 * 0.02562 * 20 19 18 23 23 C 1.31890 * 121.72420 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.46860 * 300.00249 * 1 2 3 25 25 H 1.09003 * 109.47183 * 59.99840 * 1 2 3 26 26 H 1.08992 * 109.47368 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47035 * 59.99678 * 3 2 1 28 28 H 1.08999 * 109.47052 * 300.00430 * 3 2 1 29 29 H 1.09001 * 109.46819 * 305.00261 * 4 3 2 30 30 H 1.08997 * 109.46771 * 185.00171 * 4 3 2 31 31 H 0.96999 * 119.99673 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46790 * 60.00112 * 16 14 5 33 33 H 1.09001 * 109.47168 * 300.00056 * 16 14 5 34 34 H 1.08001 * 120.79316 * 0.03591 * 18 17 16 35 35 H 1.07997 * 120.42138 * 180.23271 * 19 18 17 36 36 H 1.08997 * 109.47762 * 89.99852 * 21 20 19 37 37 H 1.09000 * 109.46994 * 209.99524 * 21 20 19 38 38 H 1.09004 * 109.47345 * 329.98967 * 21 20 19 39 39 H 1.08000 * 119.61539 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2061 -0.7862 -1.3048 7 1 3.8776 -1.3574 -2.1604 8 6 4.8622 -1.4200 -0.2566 9 7 5.5680 -0.7150 0.5988 10 14 4.7408 -3.2740 -0.0635 11 1 5.8428 -3.9234 -0.8180 12 1 4.8481 -3.6301 1.3741 13 1 3.4351 -3.7424 -0.5934 14 6 4.1542 1.3213 -2.3534 15 8 3.9500 2.5160 -2.3075 16 6 4.6076 0.6833 -3.6413 17 6 4.7298 1.7395 -4.7093 18 6 5.9269 2.4141 -4.8958 19 6 5.9948 3.3739 -5.8938 20 6 4.8733 3.6287 -6.6606 21 6 4.9354 4.6704 -7.7478 22 7 3.7495 2.9716 -6.4512 23 6 3.6486 2.0522 -5.5110 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0890 31 1 6.0257 -1.1574 1.3307 32 1 3.8790 -0.0655 -3.9519 33 1 5.5761 0.2068 -3.4895 34 1 6.7873 2.1937 -4.2814 35 1 6.9121 3.9161 -6.0696 36 1 5.2465 4.2027 -8.6819 37 1 3.9508 5.1199 -7.8769 38 1 5.6537 5.4422 -7.4710 39 1 2.7115 1.5344 -5.3692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637300710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:23 Heat of formation + Delta-G solvation = -66.256429 kcal Electronic energy + Delta-G solvation = -21755.477577 eV Core-core repulsion = 18469.560230 eV Total energy + Delta-G solvation = -3285.917347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34178 -40.29268 -38.55655 -36.58912 -34.87585 -33.50534 -33.17023 -31.58747 -30.10599 -27.33007 -27.03264 -26.24595 -24.47021 -23.69238 -22.34275 -20.92430 -18.77180 -17.93565 -17.62360 -17.15880 -17.02302 -16.90869 -16.22606 -16.14511 -15.88042 -15.59347 -15.27368 -15.05463 -14.43394 -14.09166 -13.79238 -13.64057 -13.47821 -13.15250 -13.09538 -12.99261 -12.86763 -12.65253 -12.55099 -12.49650 -12.27473 -12.08212 -11.78780 -11.00077 -10.71006 -10.56033 -10.40535 -10.33686 -9.61367 -9.38158 -8.24720 -6.01541 0.21032 0.39504 1.45156 1.52180 1.63015 2.05199 2.37604 2.75483 2.98278 3.07408 3.25993 3.45176 3.87641 3.90781 4.10885 4.15732 4.24306 4.27207 4.46041 4.52333 4.52605 4.60579 4.63174 4.72338 4.74774 4.79088 4.83784 4.84707 4.89418 4.97211 5.21969 5.24912 5.31430 5.45861 5.54278 5.86219 6.07262 6.39255 6.45461 7.06879 7.20268 7.62658 8.05702 8.80158 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.005061 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.207125 B = 5531.454101 C = 6282.759480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.064 3.936 4 C 0.120 3.880 5 N -0.439 5.439 6 C -0.336 4.336 7 H 0.092 0.908 8 C 0.011 3.989 9 N -0.897 5.897 10 Si 0.977 3.023 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.465 3.535 15 O -0.633 6.633 16 C -0.068 4.068 17 C -0.119 4.119 18 C -0.075 4.075 19 C -0.168 4.168 20 C 0.099 3.901 21 C -0.095 4.095 22 N -0.508 5.508 23 C 0.097 3.903 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 2.778 -8.355 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.004 4.004 5 N -0.157 5.157 6 C -0.463 4.463 7 H 0.109 0.891 8 C -0.192 4.192 9 N -0.534 5.534 10 Si 0.801 3.199 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.189 1.189 14 C 0.255 3.745 15 O -0.521 6.521 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.188 4.188 20 C -0.039 4.039 21 C -0.152 4.152 22 N -0.218 5.218 23 C -0.059 4.059 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.513 3.336 -8.653 9.608 hybrid contribution 0.456 -0.893 1.308 1.649 sum -2.057 2.443 -7.345 8.009 Atomic orbital electron populations 1.22894 0.80613 1.03412 1.00219 1.88056 1.20472 1.27671 1.95306 1.22805 0.94535 0.84646 0.99361 1.21258 0.91270 0.97472 0.90356 1.43478 1.56814 1.07586 1.07827 1.19495 1.36577 0.82314 1.07941 0.89073 1.26088 0.93172 1.03649 0.96302 1.70026 1.28557 1.38332 1.16520 0.85191 0.78962 0.78427 0.77307 1.19571 1.21175 1.18915 1.20945 0.80241 0.86072 0.87193 1.90507 1.58377 1.16600 1.86636 1.20235 1.04340 0.96317 0.89925 1.20570 0.95412 0.98944 0.97201 1.21707 0.97647 0.94308 0.96458 1.22217 1.00885 0.99239 0.96427 1.21918 0.88673 0.96137 0.97131 1.20748 1.03903 0.95406 0.95163 1.67508 1.27590 1.07596 1.19079 1.22606 0.97979 0.94171 0.91163 0.93042 0.94304 0.88639 0.91712 0.95106 0.89484 0.92758 0.92124 0.87933 0.88154 0.84445 0.81784 0.89015 0.91074 0.88677 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.49 10.44 -148.98 -1.56 -18.04 16 3 C 0.06 2.67 6.24 71.98 0.45 3.12 16 4 C 0.12 5.86 5.26 86.38 0.45 6.32 16 5 N -0.44 -22.06 2.45 -635.54 -1.56 -23.62 16 6 C -0.34 -16.73 8.29 84.04 0.70 -16.03 16 7 H 0.09 4.33 7.21 -2.91 -0.02 4.31 16 8 C 0.01 0.53 4.95 84.93 0.42 0.95 16 9 N -0.90 -47.55 11.66 21.66 0.25 -47.30 16 10 Si 0.98 39.87 29.59 68.60 2.03 41.90 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 14 C 0.47 22.52 7.59 87.66 0.67 23.18 16 15 O -0.63 -33.62 15.71 -3.06 -0.05 -33.67 16 16 C -0.07 -2.68 4.59 29.11 0.13 -2.55 16 17 C -0.12 -4.37 4.39 -19.77 -0.09 -4.46 16 18 C -0.08 -2.48 9.86 22.47 0.22 -2.26 16 19 C -0.17 -4.65 9.74 22.36 0.22 -4.44 16 20 C 0.10 2.86 6.78 42.55 0.29 3.15 16 21 C -0.10 -1.83 10.17 71.24 0.72 -1.11 16 22 N -0.51 -17.45 10.27 -183.89 -1.89 -19.34 16 23 C 0.10 3.48 10.86 84.67 0.92 4.40 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 4.55 5.81 -2.39 -0.01 4.54 16 30 H 0.05 2.72 7.59 -2.39 -0.02 2.70 16 31 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 32 H 0.10 3.72 7.66 -2.39 -0.02 3.70 16 33 H 0.10 3.88 8.05 -2.39 -0.02 3.86 16 34 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.38 8.08 -2.38 -0.02 1.36 16 39 H 0.15 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -66.19 335.05 4.62 -61.57 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.03 Total: 26.21 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.35 Total: 12.29 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.20 Total: -90.26 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -1.60 Total: -51.71 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -66.19 4.62 -61.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637300710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.686 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds