Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33650 * 125.79745 * 2 1 4 4 C 1.34215 * 110.90852 * 180.02562 * 3 2 1 5 5 C 1.34174 * 109.12337 * 359.71526 * 4 3 2 6 6 C 1.36417 * 125.80613 * 180.02562 * 2 1 3 7 7 C 1.47383 * 127.18884 * 359.97438 * 6 2 1 8 8 O 1.21616 * 120.00115 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99702 * 180.02562 * 7 6 2 10 10 C 1.47023 * 125.64990 * 0.04217 * 9 7 6 11 11 C 1.54368 * 107.28806 * 178.87231 * 10 9 7 12 12 C 1.55153 * 102.92223 * 337.86602 * 11 10 9 13 13 H 1.09011 * 111.00187 * 277.35854 * 12 11 10 14 14 C 1.53001 * 111.01013 * 153.54913 * 12 11 10 15 15 N 1.46496 * 109.47205 * 178.17855 * 14 12 11 16 16 C 1.36945 * 119.99718 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47423 * 125.64814 * 180.02562 * 9 7 6 25 25 H 1.09004 * 109.46637 * 269.99203 * 1 2 3 26 26 H 1.09000 * 109.47666 * 29.99549 * 1 2 3 27 27 H 1.09000 * 109.46993 * 149.99940 * 1 2 3 28 28 H 1.07998 * 125.44184 * 179.97438 * 4 3 2 29 29 H 1.08006 * 127.02560 * 180.26794 * 5 4 3 30 30 H 1.09003 * 109.88176 * 298.32612 * 10 9 7 31 31 H 1.08997 * 109.88043 * 59.33263 * 10 9 7 32 32 H 1.09002 * 110.75858 * 219.49035 * 11 10 9 33 33 H 1.09009 * 110.70229 * 96.20587 * 11 10 9 34 34 H 1.08997 * 109.46922 * 58.16897 * 14 12 11 35 35 H 1.09000 * 109.46483 * 298.17716 * 14 12 11 36 36 H 0.96996 * 120.00499 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36901 * 85.32383 * 24 9 7 39 39 H 1.09004 * 110.45952 * 323.04923 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2887 1.0840 0.0000 4 6 3.5858 0.7392 -0.0006 5 6 3.6849 -0.5989 0.0054 6 6 2.3051 -1.1063 -0.0005 7 6 1.8741 -2.5157 -0.0006 8 8 0.6891 -2.7892 -0.0007 9 7 2.7932 -3.5015 -0.0006 10 6 4.2514 -3.3134 0.0004 11 6 4.8948 -4.7163 0.0290 12 6 3.7643 -5.6047 0.6122 13 1 3.7449 -5.5477 1.7006 14 6 3.9092 -7.0542 0.1444 15 7 2.8528 -7.8701 0.7481 16 6 2.7803 -9.2095 0.4724 17 1 3.5017 -9.6642 -0.1903 18 6 1.7797 -9.9827 1.0448 19 7 0.9002 -9.4284 1.8521 20 14 1.6803 -11.8097 0.6682 21 1 0.8205 -12.0234 -0.5235 22 1 3.0428 -12.3338 0.3960 23 1 1.0986 -12.5242 1.8328 24 6 2.5030 -4.9468 -0.0012 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 4.4171 1.4286 -0.0011 29 1 4.5929 -1.1838 0.0106 30 1 4.5574 -2.7831 -0.9014 31 1 4.5516 -2.7480 0.8825 32 1 5.7688 -4.7273 0.6803 33 1 5.1588 -5.0398 -0.9780 34 1 4.8832 -7.4382 0.4478 35 1 3.8246 -7.0956 -0.9415 36 1 2.2047 -7.4616 1.3430 37 1 0.2007 -9.9687 2.2518 38 1 2.3470 -5.3020 -1.0199 39 1 1.6275 -5.1599 0.6123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662591838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = -4.178147 kcal Electronic energy + Delta-G solvation = -21315.104774 eV Core-core repulsion = 18031.879343 eV Total energy + Delta-G solvation = -3283.225431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.75091 -39.77565 -37.52044 -34.70085 -33.27443 -32.31346 -31.81079 -30.40380 -28.74619 -27.24167 -25.50655 -23.99107 -22.49999 -21.90617 -21.26336 -19.96770 -18.99359 -17.61691 -16.95017 -16.55347 -16.22598 -15.99751 -15.36502 -14.67375 -14.37906 -14.02220 -13.67769 -13.48545 -13.26522 -13.17368 -13.10150 -13.01936 -12.60997 -12.49631 -12.04799 -11.88527 -11.62935 -11.23753 -10.84817 -10.61733 -10.58812 -10.41869 -10.01766 -9.96923 -9.83810 -9.66093 -8.86373 -8.83254 -8.43883 -6.91026 -5.73819 -3.03388 1.24949 1.87655 2.61409 3.10651 3.37503 3.45788 3.50418 3.52441 4.32383 4.46728 4.61870 4.65168 4.69376 4.92497 4.99107 5.07263 5.26173 5.34768 5.37425 5.42088 5.52059 5.60301 5.63447 5.67211 5.88209 5.97696 6.00076 6.03095 6.08168 6.13230 6.29912 6.40506 6.48150 6.70062 6.83571 6.84658 7.63366 7.71653 8.27726 8.44364 9.55568 10.12591 10.46924 11.48831 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.003432 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.761560 B = 8156.895029 C = 8869.373840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.075 3.925 3 O -0.178 6.178 4 C -0.045 4.045 5 C -0.196 4.196 6 C -0.239 4.239 7 C 0.600 3.400 8 O -0.540 6.540 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.127 4.127 12 C -0.105 4.105 13 H 0.085 0.915 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.292 1.292 24 C 0.117 3.883 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.207 0.793 29 H 0.166 0.834 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 22.050 -4.084 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.022 3.978 3 O -0.074 6.074 4 C -0.110 4.110 5 C -0.215 4.215 6 C -0.243 4.243 7 C 0.390 3.610 8 O -0.419 6.419 9 N -0.343 5.343 10 C -0.024 4.024 11 C -0.166 4.166 12 C -0.125 4.125 13 H 0.103 0.897 14 C 0.037 3.963 15 N -0.378 5.378 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.208 1.208 23 H -0.218 1.218 24 C -0.004 4.004 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.183 0.817 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.182 22.080 -4.149 23.586 hybrid contribution 0.106 -1.010 0.052 1.017 sum 7.288 21.069 -4.097 22.668 Atomic orbital electron populations 1.20624 0.83683 1.05066 1.04503 1.22824 0.94131 0.83037 0.97770 1.83754 1.17200 1.35036 1.71442 1.23873 0.83532 0.96435 1.07187 1.23388 0.97262 0.94529 1.06338 1.21146 0.93332 0.93782 1.16031 1.16814 0.84643 0.83072 0.76464 1.90781 1.16092 1.83709 1.51364 1.48291 1.06291 1.07006 1.72732 1.22336 0.80578 0.98418 1.01076 1.22705 0.98271 0.93179 1.02428 1.22592 0.93235 0.95910 1.00762 0.89683 1.20583 0.92844 0.87035 0.95823 1.42372 1.32840 1.06159 1.56394 1.19210 1.10301 0.84754 1.23044 0.91161 1.24754 0.98062 0.98174 0.99923 1.69666 1.18316 1.35031 1.34972 0.86189 0.77471 0.85270 0.77237 1.21705 1.20779 1.21785 1.22343 0.99118 0.77235 1.01736 0.89279 0.90491 0.87167 0.77674 0.81718 0.91371 0.91272 0.89924 0.90249 0.95802 0.96032 0.78187 0.93469 0.91019 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.89 36.01 0.36 -0.49 16 2 C 0.08 0.91 7.37 -34.96 -0.26 0.65 16 3 O -0.18 -1.90 10.52 7.66 0.08 -1.82 16 4 C -0.04 -0.38 12.03 29.30 0.35 -0.02 16 5 C -0.20 -1.96 9.42 -37.46 -0.35 -2.31 16 6 C -0.24 -3.18 6.25 -103.28 -0.64 -3.83 16 7 C 0.60 9.80 7.84 -12.54 -0.10 9.71 16 8 O -0.54 -10.46 15.10 5.26 0.08 -10.38 16 9 N -0.61 -9.20 3.33 -171.76 -0.57 -9.77 16 10 C 0.10 1.09 5.00 -3.04 -0.02 1.08 16 11 C -0.13 -1.45 6.42 -24.87 -0.16 -1.61 16 12 C -0.11 -1.66 3.07 -88.46 -0.27 -1.93 16 13 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 14 C 0.17 3.22 5.71 -4.04 -0.02 3.19 16 15 N -0.73 -18.59 5.50 -59.91 -0.33 -18.92 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 20 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.12 2.01 6.23 -2.52 -0.02 1.99 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.11 1.33 6.48 -51.93 -0.34 0.99 16 28 H 0.21 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.17 1.28 4.87 -52.48 -0.26 1.03 16 30 H 0.07 0.64 7.04 -51.93 -0.37 0.27 16 31 H 0.07 0.67 6.83 -51.93 -0.35 0.32 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.86 8.04 -51.92 -0.42 0.44 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 36 H 0.38 10.34 7.63 -40.82 -0.31 10.03 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 39 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -34.19 322.93 -6.92 -41.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.37 Total: 6.22 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.38 Total: -1.01 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.18 Total: -56.58 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.16 Total: -12.20 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.19 -6.92 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662591838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.932 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds