Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33650 * 125.79745 * 2 1 4 4 C 1.34215 * 110.90852 * 180.02562 * 3 2 1 5 5 C 1.34174 * 109.12337 * 359.71526 * 4 3 2 6 6 C 1.36417 * 125.80613 * 180.02562 * 2 1 3 7 7 C 1.47383 * 127.18884 * 359.97438 * 6 2 1 8 8 O 1.21616 * 120.00115 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99702 * 180.02562 * 7 6 2 10 10 C 1.47023 * 125.64990 * 0.04217 * 9 7 6 11 11 C 1.54368 * 107.28806 * 178.87231 * 10 9 7 12 12 C 1.55153 * 102.92223 * 337.86602 * 11 10 9 13 13 H 1.09011 * 111.00187 * 277.35854 * 12 11 10 14 14 C 1.53001 * 111.01013 * 153.54913 * 12 11 10 15 15 N 1.46496 * 109.47205 * 178.17855 * 14 12 11 16 16 C 1.36945 * 119.99718 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47423 * 125.64814 * 180.02562 * 9 7 6 25 25 H 1.09004 * 109.46637 * 269.99203 * 1 2 3 26 26 H 1.09000 * 109.47666 * 29.99549 * 1 2 3 27 27 H 1.09000 * 109.46993 * 149.99940 * 1 2 3 28 28 H 1.07998 * 125.44184 * 179.97438 * 4 3 2 29 29 H 1.08006 * 127.02560 * 180.26794 * 5 4 3 30 30 H 1.09003 * 109.88176 * 298.32612 * 10 9 7 31 31 H 1.08997 * 109.88043 * 59.33263 * 10 9 7 32 32 H 1.09002 * 110.75858 * 219.49035 * 11 10 9 33 33 H 1.09009 * 110.70229 * 96.20587 * 11 10 9 34 34 H 1.08997 * 109.46922 * 58.16897 * 14 12 11 35 35 H 1.09000 * 109.46483 * 298.17716 * 14 12 11 36 36 H 0.96996 * 120.00499 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36901 * 85.32383 * 24 9 7 39 39 H 1.09004 * 110.45952 * 323.04923 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2887 1.0840 0.0000 4 6 3.5858 0.7392 -0.0006 5 6 3.6849 -0.5989 0.0054 6 6 2.3051 -1.1063 -0.0005 7 6 1.8741 -2.5157 -0.0006 8 8 0.6891 -2.7892 -0.0007 9 7 2.7932 -3.5015 -0.0006 10 6 4.2514 -3.3134 0.0004 11 6 4.8948 -4.7163 0.0290 12 6 3.7643 -5.6047 0.6122 13 1 3.7449 -5.5477 1.7006 14 6 3.9092 -7.0542 0.1444 15 7 2.8528 -7.8701 0.7481 16 6 2.7803 -9.2095 0.4724 17 1 3.5017 -9.6642 -0.1903 18 6 1.7797 -9.9827 1.0448 19 7 0.9002 -9.4284 1.8521 20 14 1.6803 -11.8097 0.6682 21 1 0.8205 -12.0234 -0.5235 22 1 3.0428 -12.3338 0.3960 23 1 1.0986 -12.5242 1.8328 24 6 2.5030 -4.9468 -0.0012 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 4.4171 1.4286 -0.0011 29 1 4.5929 -1.1838 0.0106 30 1 4.5574 -2.7831 -0.9014 31 1 4.5516 -2.7480 0.8825 32 1 5.7688 -4.7273 0.6803 33 1 5.1588 -5.0398 -0.9780 34 1 4.8832 -7.4382 0.4478 35 1 3.8246 -7.0956 -0.9415 36 1 2.2047 -7.4616 1.3430 37 1 0.2007 -9.9687 2.2518 38 1 2.3470 -5.3020 -1.0199 39 1 1.6275 -5.1599 0.6123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662591838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = -27.815709 kcal Electronic energy + Delta-G solvation = -21316.129775 eV Core-core repulsion = 18031.879343 eV Total energy + Delta-G solvation = -3284.250432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.55818 -40.97720 -38.81702 -36.47534 -34.38880 -33.66944 -32.80929 -31.95409 -30.06620 -28.24167 -27.00800 -25.44276 -23.95561 -22.97835 -22.24403 -21.30865 -19.93675 -19.17375 -18.42188 -17.50784 -17.23174 -17.18437 -16.62855 -16.34629 -15.68789 -15.29638 -15.11778 -14.87764 -14.65702 -14.21676 -14.07573 -13.90395 -13.82988 -13.77542 -13.39642 -13.09246 -12.82005 -12.72472 -12.69047 -12.19249 -12.13327 -11.84371 -11.63921 -11.57690 -11.11498 -10.93980 -10.82437 -9.84069 -9.44678 -9.00573 -7.94882 -5.24564 0.28843 1.14316 1.46870 1.49402 1.57715 1.76259 2.04992 2.24715 2.56058 3.35579 3.40906 3.61329 3.62750 3.78412 3.87886 3.92392 4.17809 4.27198 4.33148 4.43474 4.54571 4.57735 4.61091 4.65671 4.73163 4.79618 4.84958 4.88219 5.00208 5.06530 5.18502 5.19379 5.26541 5.40120 5.41964 5.50040 6.04265 6.26700 6.48176 7.05837 7.32603 8.08897 8.30439 9.28871 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.003432 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.761560 B = 8156.895029 C = 8869.373840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.067 3.933 3 O -0.179 6.179 4 C -0.027 4.027 5 C -0.206 4.206 6 C -0.267 4.267 7 C 0.588 3.412 8 O -0.588 6.588 9 N -0.611 5.611 10 C 0.096 3.904 11 C -0.113 4.113 12 C -0.097 4.097 13 H 0.076 0.924 14 C 0.164 3.836 15 N -0.749 5.749 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.289 1.289 22 H -0.265 1.265 23 H -0.296 1.296 24 C 0.121 3.879 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.254 0.746 29 H 0.189 0.811 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.059 0.941 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 23.721 -4.849 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 O -0.075 6.075 4 C -0.092 4.092 5 C -0.225 4.225 6 C -0.271 4.271 7 C 0.381 3.619 8 O -0.471 6.471 9 N -0.343 5.343 10 C -0.026 4.026 11 C -0.151 4.151 12 C -0.116 4.116 13 H 0.094 0.906 14 C 0.037 3.963 15 N -0.392 5.392 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.216 1.216 22 H -0.189 1.189 23 H -0.223 1.223 24 C -0.002 4.002 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.104 0.896 28 H 0.270 0.730 29 H 0.206 0.794 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.449 23.775 -4.945 26.437 hybrid contribution -0.830 -1.441 0.254 1.682 sum 9.618 22.335 -4.691 24.766 Atomic orbital electron populations 1.20597 0.83329 1.05100 1.04806 1.23012 0.94790 0.83297 0.97507 1.83785 1.18248 1.34342 1.71158 1.24810 0.83366 0.96823 1.04163 1.23622 0.96244 0.95362 1.07223 1.21112 0.95844 0.92067 1.18120 1.17413 0.84232 0.84580 0.75701 1.90744 1.18149 1.84643 1.53596 1.48370 1.08237 1.05612 1.72116 1.22653 0.77661 0.98799 1.03447 1.22733 0.97289 0.91695 1.03374 1.22413 0.94637 0.94381 1.00196 0.90584 1.20770 0.91464 0.88468 0.95565 1.42646 1.33997 1.06053 1.56493 1.19681 1.09836 0.86100 1.22043 0.90179 1.25633 0.98219 1.02774 1.00507 1.69844 1.19243 1.36502 1.36735 0.85104 0.78012 0.79889 0.76540 1.21597 1.18948 1.22315 1.22081 0.98523 0.79387 1.00175 0.88842 0.87864 0.89633 0.72983 0.79408 0.88676 0.89100 0.86893 0.89058 0.94495 0.95677 0.79734 0.94100 0.92274 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.89 71.24 0.70 -1.01 16 2 C 0.07 1.58 7.37 25.26 0.19 1.76 16 3 O -0.18 -3.35 10.52 4.49 0.05 -3.31 16 4 C -0.03 -0.34 12.03 66.89 0.80 0.46 16 5 C -0.21 -3.43 9.42 23.65 0.22 -3.20 16 6 C -0.27 -6.93 6.25 -18.99 -0.12 -7.04 16 7 C 0.59 19.86 7.84 86.65 0.68 20.54 16 8 O -0.59 -24.56 15.10 -4.08 -0.06 -24.62 16 9 N -0.61 -18.45 3.33 -815.58 -2.71 -21.16 16 10 C 0.10 1.82 5.00 86.74 0.43 2.26 16 11 C -0.11 -2.19 6.42 31.80 0.20 -1.99 16 12 C -0.10 -3.00 3.07 -9.40 -0.03 -3.03 16 13 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 14 C 0.16 6.30 5.71 86.38 0.49 6.79 16 15 N -0.75 -38.80 5.50 -343.47 -1.89 -40.68 16 16 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 19 N -0.97 -61.68 13.06 21.65 0.28 -61.40 16 20 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 C 0.12 4.34 6.23 86.86 0.54 4.88 16 25 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 2.24 6.48 -2.39 -0.02 2.22 16 28 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 29 H 0.19 2.05 4.87 -2.91 -0.01 2.04 16 30 H 0.10 1.37 7.04 -2.39 -0.02 1.36 16 31 H 0.09 1.39 6.83 -2.39 -0.02 1.38 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.61 8.04 -2.38 -0.02 1.59 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.03 0.97 8.03 -2.39 -0.02 0.95 16 36 H 0.37 20.91 7.63 -92.71 -0.71 20.20 16 37 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 39 H 0.04 1.84 8.04 -2.38 -0.02 1.82 16 Total: -1.00 -78.48 322.93 3.49 -74.99 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.36 Total: 23.95 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.43 Total: 3.17 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -4.32 Total: -123.24 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.01 Total: -27.92 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.48 3.49 -74.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662591838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds