Wall clock time and date at job start Tue Mar 31 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33651 * 125.80053 * 2 1 4 4 C 1.34214 * 110.90956 * 179.97438 * 3 2 1 5 5 C 1.34183 * 109.12347 * 359.70381 * 4 3 2 6 6 C 1.36417 * 125.80316 * 179.97438 * 2 1 3 7 7 C 1.47380 * 127.19053 * 0.02562 * 6 2 1 8 8 O 1.21614 * 120.00252 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99951 * 179.97438 * 7 6 2 10 10 C 1.47026 * 125.64807 * 0.02588 * 9 7 6 11 11 C 1.54320 * 107.26896 * 181.01427 * 10 9 7 12 12 C 1.55153 * 102.94448 * 22.19229 * 11 10 9 13 13 H 1.08997 * 111.00379 * 82.61153 * 12 11 10 14 14 C 1.53006 * 111.00114 * 206.42394 * 12 11 10 15 15 N 1.46500 * 109.46998 * 184.99914 * 14 12 11 16 16 C 1.36931 * 120.00396 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00545 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00512 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00264 * 20 18 16 22 22 H 1.48499 * 109.47548 * 210.00043 * 20 18 16 23 23 H 1.48496 * 109.47428 * 330.00419 * 20 18 16 24 24 C 1.47419 * 125.64915 * 179.97438 * 9 7 6 25 25 H 1.08989 * 109.47499 * 270.00063 * 1 2 3 26 26 H 1.09002 * 109.46972 * 30.00372 * 1 2 3 27 27 H 1.09001 * 109.46984 * 150.00032 * 1 2 3 28 28 H 1.07998 * 125.43696 * 179.97438 * 4 3 2 29 29 H 1.07991 * 127.02303 * 180.26719 * 5 4 3 30 30 H 1.09001 * 109.88241 * 61.59263 * 10 9 7 31 31 H 1.08998 * 109.88146 * 300.42959 * 10 9 7 32 32 H 1.09001 * 110.71673 * 263.82351 * 11 10 9 33 33 H 1.09001 * 110.87102 * 140.62818 * 11 10 9 34 34 H 1.08993 * 109.46955 * 305.00139 * 14 12 11 35 35 H 1.09000 * 109.47050 * 64.99968 * 14 12 11 36 36 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 37 37 H 0.96997 * 120.00065 * 179.97438 * 19 18 16 38 38 H 1.09001 * 110.37071 * 37.07544 * 24 9 7 39 39 H 1.09007 * 110.36493 * 274.75907 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5991 0.0075 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0006 8 8 0.6890 -2.7892 -0.0003 9 7 2.7931 -3.5015 0.0006 10 6 4.2513 -3.3135 0.0010 11 6 4.8940 -4.7163 -0.0252 12 6 3.7648 -5.6051 -0.6101 13 1 3.7473 -5.5487 -1.6984 14 6 3.9092 -7.0544 -0.1411 15 7 2.9014 -7.8851 -0.8048 16 6 2.8372 -9.2269 -0.5392 17 1 3.5298 -9.6728 0.1593 18 6 1.8826 -10.0141 -1.1683 19 7 1.8212 -11.3039 -0.9134 20 14 0.6851 -9.2429 -2.3769 21 1 1.2634 -9.2881 -3.7439 22 1 -0.5942 -9.9967 -2.3556 23 1 0.4340 -7.8308 -1.9922 24 6 2.5028 -4.9469 0.0012 25 1 -0.3634 0.0000 1.0275 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 4.4172 1.4285 0.0003 29 1 4.5928 -1.1839 0.0137 30 1 4.5563 -2.7827 0.9029 31 1 4.5528 -2.7510 -0.8826 32 1 5.1564 -5.0391 0.9823 33 1 5.7703 -4.7298 -0.6734 34 1 4.9047 -7.4201 -0.3928 35 1 3.7666 -7.1029 0.9384 36 1 2.2790 -7.4844 -1.4318 37 1 1.1539 -11.8539 -1.3528 38 1 1.6285 -5.1585 -0.6144 39 1 2.3454 -5.3017 1.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662591839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:58 Heat of formation + Delta-G solvation = -0.292084 kcal Electronic energy + Delta-G solvation = -21398.762128 eV Core-core repulsion = 18115.705210 eV Total energy + Delta-G solvation = -3283.056918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.82421 -39.90102 -37.65449 -34.90271 -33.35615 -32.37652 -31.88875 -30.73023 -29.03803 -27.36765 -25.74290 -24.01419 -22.38071 -21.83140 -21.32098 -20.19024 -19.08194 -17.81440 -17.36089 -16.63564 -16.31982 -16.09517 -15.45600 -14.73017 -14.40544 -14.09230 -13.88671 -13.73173 -13.34524 -13.22782 -13.16703 -12.87615 -12.75450 -12.59149 -12.19504 -11.97281 -11.80046 -11.67397 -10.95136 -10.69341 -10.64600 -10.49039 -10.11911 -10.04718 -9.95025 -9.57931 -8.92234 -8.89391 -8.55191 -7.23504 -5.76033 -3.12032 1.16711 1.80326 2.54018 2.99112 3.27125 3.40480 3.44679 3.48397 4.24823 4.37082 4.54409 4.61022 4.61430 4.78118 4.88620 4.99068 5.15906 5.24084 5.28325 5.33560 5.42765 5.47335 5.55062 5.59325 5.75163 5.78881 5.83124 5.91963 5.92505 6.01625 6.13260 6.18611 6.34229 6.59180 6.70228 6.77220 7.51048 7.99110 8.16053 8.42818 9.21446 9.94001 10.13068 11.42271 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.003858 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.549016 B = 7256.559839 C = 8037.195409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.076 3.924 3 O -0.178 6.178 4 C -0.043 4.043 5 C -0.196 4.196 6 C -0.240 4.240 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.126 4.126 12 C -0.110 4.110 13 H 0.085 0.915 14 C 0.169 3.831 15 N -0.757 5.757 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.207 0.793 29 H 0.166 0.834 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 26.663 2.046 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 O -0.074 6.074 4 C -0.109 4.109 5 C -0.215 4.215 6 C -0.244 4.244 7 C 0.391 3.609 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.130 4.130 13 H 0.103 0.897 14 C 0.042 3.958 15 N -0.402 5.402 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.713 3.287 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.224 0.776 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.223 26.632 2.153 27.225 hybrid contribution -0.504 0.281 -0.871 1.045 sum 4.719 26.913 1.282 27.353 Atomic orbital electron populations 1.20623 0.83694 1.05113 1.04467 1.22824 0.94131 0.83047 0.97667 1.83759 1.17218 1.35011 1.71387 1.23891 0.83519 0.96449 1.07050 1.23383 0.97219 0.94537 1.06376 1.21117 0.93383 0.93685 1.16220 1.16824 0.84596 0.83115 0.76346 1.90774 1.16132 1.83749 1.51461 1.48282 1.06414 1.06847 1.72825 1.22345 0.80395 0.98469 1.01231 1.22685 0.98157 0.93006 1.02634 1.22649 0.93498 0.96076 1.00760 0.89700 1.20567 0.93151 0.86312 0.95786 1.42732 1.38328 1.06485 1.52699 1.19042 1.14424 0.82264 1.21814 0.89164 1.24664 0.99050 0.95341 0.99967 1.69701 1.37649 1.04200 1.46640 0.86571 0.81541 0.78704 0.81904 1.21068 1.21638 1.20197 1.22378 0.98876 0.77630 1.01847 0.89295 0.90429 0.87203 0.77621 0.81690 0.91178 0.91185 0.90039 0.89737 0.94861 0.95159 0.80611 0.93034 0.90179 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.89 36.01 0.36 -0.44 16 2 C 0.08 0.87 7.37 -34.96 -0.26 0.62 16 3 O -0.18 -1.80 10.52 7.66 0.08 -1.71 16 4 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 5 C -0.20 -1.83 9.42 -37.45 -0.35 -2.18 16 6 C -0.24 -3.03 6.24 -103.28 -0.64 -3.67 16 7 C 0.60 9.29 7.84 -12.54 -0.10 9.19 16 8 O -0.54 -9.97 15.10 5.27 0.08 -9.89 16 9 N -0.61 -8.61 3.33 -171.80 -0.57 -9.19 16 10 C 0.10 1.00 4.99 -3.06 -0.02 0.99 16 11 C -0.13 -1.32 6.42 -24.90 -0.16 -1.48 16 12 C -0.11 -1.61 3.05 -88.47 -0.27 -1.88 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.17 3.12 5.72 -4.04 -0.02 3.10 16 15 N -0.76 -17.93 5.35 -59.91 -0.32 -18.25 16 16 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 17 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 20 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 24 C 0.11 1.82 6.32 -2.53 -0.02 1.80 16 25 H 0.09 0.76 8.14 -51.94 -0.42 0.34 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.26 6.48 -51.93 -0.34 0.92 16 28 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.17 1.18 4.87 -52.49 -0.26 0.92 16 30 H 0.07 0.60 7.00 -51.93 -0.36 0.24 16 31 H 0.07 0.62 6.88 -51.93 -0.36 0.26 16 32 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.57 7.96 -51.93 -0.41 0.15 16 36 H 0.36 8.47 5.53 -40.82 -0.23 8.24 16 37 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 38 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -35.02 319.86 -6.56 -41.58 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.33 Total: 4.66 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.38 Total: -1.03 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.12 Total: -56.29 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.16 Total: -11.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.02 -6.56 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662591839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds