Wall clock time and date at job start Tue Mar 31 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33651 * 125.80053 * 2 1 4 4 C 1.34214 * 110.90956 * 179.97438 * 3 2 1 5 5 C 1.34183 * 109.12347 * 359.70381 * 4 3 2 6 6 C 1.36417 * 125.80316 * 179.97438 * 2 1 3 7 7 C 1.47380 * 127.19053 * 0.02562 * 6 2 1 8 8 O 1.21614 * 120.00252 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99951 * 179.97438 * 7 6 2 10 10 C 1.47026 * 125.64807 * 0.02588 * 9 7 6 11 11 C 1.54320 * 107.26896 * 181.01427 * 10 9 7 12 12 C 1.55153 * 102.94448 * 22.19229 * 11 10 9 13 13 H 1.08997 * 111.00379 * 82.61153 * 12 11 10 14 14 C 1.53006 * 111.00114 * 206.42394 * 12 11 10 15 15 N 1.46500 * 109.46998 * 184.99914 * 14 12 11 16 16 C 1.36931 * 120.00396 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00545 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00512 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00264 * 20 18 16 22 22 H 1.48499 * 109.47548 * 210.00043 * 20 18 16 23 23 H 1.48496 * 109.47428 * 330.00419 * 20 18 16 24 24 C 1.47419 * 125.64915 * 179.97438 * 9 7 6 25 25 H 1.08989 * 109.47499 * 270.00063 * 1 2 3 26 26 H 1.09002 * 109.46972 * 30.00372 * 1 2 3 27 27 H 1.09001 * 109.46984 * 150.00032 * 1 2 3 28 28 H 1.07998 * 125.43696 * 179.97438 * 4 3 2 29 29 H 1.07991 * 127.02303 * 180.26719 * 5 4 3 30 30 H 1.09001 * 109.88241 * 61.59263 * 10 9 7 31 31 H 1.08998 * 109.88146 * 300.42959 * 10 9 7 32 32 H 1.09001 * 110.71673 * 263.82351 * 11 10 9 33 33 H 1.09001 * 110.87102 * 140.62818 * 11 10 9 34 34 H 1.08993 * 109.46955 * 305.00139 * 14 12 11 35 35 H 1.09000 * 109.47050 * 64.99968 * 14 12 11 36 36 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 37 37 H 0.96997 * 120.00065 * 179.97438 * 19 18 16 38 38 H 1.09001 * 110.37071 * 37.07544 * 24 9 7 39 39 H 1.09007 * 110.36493 * 274.75907 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5991 0.0075 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0006 8 8 0.6890 -2.7892 -0.0003 9 7 2.7931 -3.5015 0.0006 10 6 4.2513 -3.3135 0.0010 11 6 4.8940 -4.7163 -0.0252 12 6 3.7648 -5.6051 -0.6101 13 1 3.7473 -5.5487 -1.6984 14 6 3.9092 -7.0544 -0.1411 15 7 2.9014 -7.8851 -0.8048 16 6 2.8372 -9.2269 -0.5392 17 1 3.5298 -9.6728 0.1593 18 6 1.8826 -10.0141 -1.1683 19 7 1.8212 -11.3039 -0.9134 20 14 0.6851 -9.2429 -2.3769 21 1 1.2634 -9.2881 -3.7439 22 1 -0.5942 -9.9967 -2.3556 23 1 0.4340 -7.8308 -1.9922 24 6 2.5028 -4.9469 0.0012 25 1 -0.3634 0.0000 1.0275 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 4.4172 1.4285 0.0003 29 1 4.5928 -1.1839 0.0137 30 1 4.5563 -2.7827 0.9029 31 1 4.5528 -2.7510 -0.8826 32 1 5.1564 -5.0391 0.9823 33 1 5.7703 -4.7298 -0.6734 34 1 4.9047 -7.4201 -0.3928 35 1 3.7666 -7.1029 0.9384 36 1 2.2790 -7.4844 -1.4318 37 1 1.1539 -11.8539 -1.3528 38 1 1.6285 -5.1585 -0.6144 39 1 2.3454 -5.3017 1.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662591839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:56 Heat of formation + Delta-G solvation = -24.896218 kcal Electronic energy + Delta-G solvation = -21399.829043 eV Core-core repulsion = 18115.705210 eV Total energy + Delta-G solvation = -3284.123834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.56673 -41.00297 -38.86088 -36.63078 -34.41252 -33.76570 -32.87992 -32.23785 -30.22240 -28.32052 -27.11082 -25.28463 -23.76892 -22.96199 -22.29792 -21.44425 -19.99234 -19.59536 -18.48065 -17.51068 -17.24906 -17.18950 -16.60892 -16.41760 -15.80854 -15.49109 -14.95286 -14.87691 -14.65289 -14.21662 -14.20266 -13.92829 -13.90990 -13.79144 -13.68944 -13.30712 -12.89217 -12.82678 -12.70173 -12.20760 -11.96908 -11.89963 -11.75518 -11.62325 -11.13757 -10.99378 -10.83162 -9.85523 -9.45623 -9.31347 -8.05209 -5.37902 0.27823 1.13337 1.35388 1.37732 1.44335 1.75057 2.03622 2.23426 2.45240 3.24944 3.31902 3.58468 3.61339 3.68034 3.81434 3.90634 4.01332 4.25756 4.31176 4.39404 4.49880 4.56885 4.57766 4.63253 4.72170 4.77293 4.82062 4.87237 4.99505 5.04380 5.15550 5.17691 5.25198 5.38368 5.40663 5.74374 6.03487 6.19386 6.45641 7.03893 7.05787 7.82708 7.99427 9.16388 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.003858 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.549016 B = 7256.559839 C = 8037.195409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.028 4.028 5 C -0.205 4.205 6 C -0.267 4.267 7 C 0.590 3.410 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.096 3.904 11 C -0.114 4.114 12 C -0.101 4.101 13 H 0.085 0.915 14 C 0.166 3.834 15 N -0.762 5.762 16 C -0.232 4.232 17 H 0.062 0.938 18 C -0.061 4.061 19 N -0.982 5.982 20 Si 0.949 3.051 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.262 1.262 24 C 0.114 3.886 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.253 0.747 29 H 0.189 0.811 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.363 0.637 37 H 0.258 0.742 38 H 0.048 0.952 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 30.055 1.541 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 O -0.076 6.076 4 C -0.093 4.093 5 C -0.224 4.224 6 C -0.271 4.271 7 C 0.382 3.618 8 O -0.470 6.470 9 N -0.343 5.343 10 C -0.026 4.026 11 C -0.152 4.152 12 C -0.120 4.120 13 H 0.104 0.896 14 C 0.040 3.960 15 N -0.408 5.408 16 C -0.363 4.363 17 H 0.080 0.920 18 C -0.253 4.253 19 N -0.633 5.633 20 Si 0.777 3.223 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.187 1.187 24 C -0.008 4.008 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.269 0.731 29 H 0.206 0.794 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.196 0.804 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.332 30.082 1.656 31.007 hybrid contribution -1.044 -0.734 -0.623 1.420 sum 6.288 29.348 1.033 30.032 Atomic orbital electron populations 1.20597 0.83311 1.05063 1.04851 1.23028 0.94802 0.83311 0.97487 1.83788 1.18258 1.34424 1.71151 1.24805 0.83354 0.96889 1.04233 1.23622 0.96299 0.95310 1.07152 1.21110 0.95741 0.92159 1.18135 1.17367 0.84220 0.84505 0.75662 1.90739 1.18063 1.84620 1.53614 1.48355 1.08206 1.05615 1.72169 1.22641 0.77659 0.98780 1.03478 1.22718 0.97369 0.91688 1.03428 1.22479 0.94803 0.93991 1.00747 0.89637 1.20761 0.91964 0.88023 0.95261 1.42815 1.39596 1.05250 1.53100 1.19072 1.12918 0.84329 1.20013 0.91952 1.25433 1.01446 0.95813 1.02567 1.69866 1.38974 1.05869 1.48604 0.85496 0.78771 0.78275 0.79771 1.20008 1.22180 1.18712 1.22195 0.98546 0.79496 1.00591 0.88695 0.88042 0.89590 0.73120 0.79401 0.88794 0.88984 0.89213 0.86827 0.93905 0.95356 0.80417 0.93300 0.93343 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.89 71.24 0.70 -0.86 16 2 C 0.07 1.46 7.37 25.26 0.19 1.64 16 3 O -0.18 -3.14 10.52 4.49 0.05 -3.09 16 4 C -0.03 -0.32 12.03 66.89 0.80 0.48 16 5 C -0.21 -3.08 9.42 23.65 0.22 -2.86 16 6 C -0.27 -6.37 6.24 -18.99 -0.12 -6.49 16 7 C 0.59 18.23 7.84 86.65 0.68 18.91 16 8 O -0.59 -22.58 15.10 -4.07 -0.06 -22.65 16 9 N -0.61 -16.58 3.33 -815.72 -2.71 -19.29 16 10 C 0.10 1.60 4.99 86.73 0.43 2.03 16 11 C -0.11 -1.95 6.42 31.78 0.20 -1.75 16 12 C -0.10 -2.75 3.05 -9.40 -0.03 -2.78 16 13 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.17 5.95 5.72 86.38 0.49 6.44 16 15 N -0.76 -35.94 5.35 -343.46 -1.84 -37.78 16 16 C -0.23 -13.42 10.47 84.03 0.88 -12.54 16 17 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 18 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 19 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 20 Si 0.95 47.31 27.74 68.60 1.90 49.22 16 21 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 23 H -0.26 -12.29 6.52 99.48 0.65 -11.64 16 24 C 0.11 3.63 6.32 86.85 0.55 4.18 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 2.08 6.48 -2.39 -0.02 2.06 16 28 H 0.25 0.31 8.06 -2.91 -0.02 0.28 16 29 H 0.19 1.76 4.87 -2.92 -0.01 1.74 16 30 H 0.09 1.19 7.00 -2.39 -0.02 1.17 16 31 H 0.09 1.19 6.88 -2.39 -0.02 1.18 16 32 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 36 H 0.36 16.81 5.53 -92.70 -0.51 16.30 16 37 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 38 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 39 H 0.06 2.10 7.91 -2.38 -0.02 2.08 16 Total: -1.00 -79.62 319.86 3.61 -76.00 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.50 Total: 18.05 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.48 Total: 3.20 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.25 Total: -120.73 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.01 Total: -25.73 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.22 kcal Total: -79.62 3.61 -76.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662591839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.108 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds