Wall clock time and date at job start Tue Mar 31 2020 00:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34514 * 125.79353 * 2 1 4 4 C 1.41380 * 106.84091 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84207 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78781 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46796 * 89.99668 * 6 5 4 8 8 O 1.21272 * 120.00302 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99431 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99844 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47208 * 180.02562 * 10 9 7 12 12 C 1.30993 * 120.00239 * 127.15517 * 11 10 9 13 13 C 1.50700 * 120.00033 * 7.55330 * 12 11 10 14 14 N 1.46501 * 109.46758 * 127.00514 * 13 12 11 15 15 C 1.36937 * 119.99830 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00505 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99996 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00189 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00122 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46892 * 90.00475 * 19 17 15 21 21 H 1.48496 * 109.47081 * 210.00321 * 19 17 15 22 22 H 1.48496 * 109.47136 * 330.00589 * 19 17 15 23 23 O 1.34304 * 108.41973 * 0.25608 * 5 4 3 24 24 H 1.09005 * 109.46742 * 89.99990 * 1 2 3 25 25 H 1.08998 * 109.47708 * 210.00297 * 1 2 3 26 26 H 1.09006 * 109.47077 * 330.00479 * 1 2 3 27 27 H 1.07997 * 126.57947 * 0.05396 * 3 2 1 28 28 H 1.08000 * 126.58080 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47394 * 329.99368 * 6 5 4 30 30 H 1.09002 * 109.46687 * 209.98867 * 6 5 4 31 31 H 0.97003 * 120.00260 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.46552 * 299.99752 * 10 9 7 33 33 H 1.08994 * 109.47238 * 59.99544 * 10 9 7 34 34 H 1.08003 * 119.99323 * 307.15535 * 11 10 9 35 35 H 1.08005 * 119.99942 * 187.56174 * 12 11 10 36 36 H 1.08995 * 109.47607 * 247.00858 * 13 12 11 37 37 H 1.09001 * 109.47213 * 7.01353 * 13 12 11 38 38 H 0.96995 * 120.00512 * 0.02562 * 14 13 12 39 39 H 0.96993 * 120.00474 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5813 -0.7124 -0.0015 6 6 4.7705 -1.6381 -0.0019 7 6 5.1666 -1.9475 1.4189 8 8 4.5448 -1.4636 2.3409 9 7 6.2118 -2.7620 1.6649 10 6 6.5966 -3.0633 3.0460 11 6 7.7858 -3.9889 3.0457 12 6 8.8577 -3.6784 3.7316 13 6 8.8430 -2.4870 4.6543 14 7 9.2860 -2.8976 5.9890 15 6 9.3534 -1.9777 7.0011 16 1 9.0804 -0.9494 6.8154 17 6 9.7737 -2.3666 8.2656 18 7 9.8380 -1.4826 9.2387 19 14 10.2466 -4.1450 8.5868 20 1 11.6961 -4.3275 8.3207 21 1 9.9564 -4.4864 10.0026 22 1 9.4633 -5.0348 7.6925 23 8 2.2923 -1.0895 -0.0072 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9667 2.1203 0.0008 28 1 4.5213 1.2431 -0.0004 29 1 5.6039 -1.1587 -0.5152 30 1 4.5105 -2.5633 -0.5162 31 1 6.7089 -3.1494 0.9274 32 1 6.8567 -2.1383 3.5606 33 1 5.7629 -3.5425 3.5591 34 1 7.7543 -4.9083 2.4798 35 1 9.7522 -4.2761 3.6358 36 1 9.5146 -1.7202 4.2685 37 1 7.8309 -2.0867 4.7147 38 1 9.5316 -3.8210 6.1558 39 1 10.1313 -1.7543 10.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668786437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:27 Heat of formation + Delta-G solvation = 13.047005 kcal Electronic energy + Delta-G solvation = -20167.164286 eV Core-core repulsion = 16884.685794 eV Total energy + Delta-G solvation = -3282.478492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73090 -39.69290 -36.74177 -34.64936 -33.35455 -33.25928 -32.78907 -30.93909 -30.16771 -26.96890 -25.47783 -24.50397 -22.07870 -21.95479 -20.90096 -20.20087 -19.05297 -17.68867 -17.06680 -16.76565 -16.23539 -16.00385 -15.55043 -14.96353 -14.46730 -14.36311 -13.91196 -13.66806 -13.51432 -13.19578 -13.12494 -12.94580 -12.88395 -12.77539 -12.61698 -12.27374 -12.00371 -11.77344 -11.23528 -10.86799 -10.54858 -10.14793 -10.10164 -9.96033 -9.60302 -9.30167 -9.09135 -8.68802 -8.41572 -7.23171 -5.76817 -3.13278 1.50813 2.11150 2.47187 2.52163 2.69260 3.36598 3.37734 3.40095 3.45496 4.28779 4.58990 4.64118 4.70311 4.83570 4.88371 4.93245 5.01206 5.16209 5.16881 5.20156 5.42875 5.51267 5.55276 5.62601 5.67962 5.78641 5.82537 5.98518 6.06041 6.22066 6.40235 6.42242 6.46410 6.74277 7.00176 7.02149 7.39154 7.98710 8.12784 8.41686 9.20043 9.91874 10.11300 11.41368 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.002680 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.871572 B =10445.411449 C =10969.847632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.211 4.211 4 C -0.191 4.191 5 C 0.002 3.998 6 C -0.059 4.059 7 C 0.508 3.492 8 O -0.524 6.524 9 N -0.724 5.724 10 C 0.139 3.861 11 C -0.193 4.193 12 C -0.118 4.118 13 C 0.166 3.834 14 N -0.751 5.751 15 C -0.247 4.247 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 O -0.172 6.172 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.400 0.600 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.362 0.638 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -1.588 -25.514 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.230 4.230 4 C -0.210 4.210 5 C -0.048 4.048 6 C -0.099 4.099 7 C 0.293 3.707 8 O -0.400 6.400 9 N -0.376 5.376 10 C 0.017 3.983 11 C -0.213 4.213 12 C -0.137 4.137 13 C 0.040 3.960 14 N -0.397 5.397 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.716 3.284 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 O -0.069 6.069 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.142 0.858 30 H 0.128 0.872 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.195 0.805 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.028 -1.299 -24.682 28.420 hybrid contribution 0.835 -1.336 0.083 1.578 sum -13.194 -2.635 -24.599 28.038 Atomic orbital electron populations 1.20294 0.85179 1.04160 1.03272 1.22398 0.93933 0.84127 1.05897 1.21537 0.92672 0.99368 1.09421 1.21516 0.98335 0.93679 1.07452 1.21385 0.82611 0.93844 1.06997 1.20078 0.93752 1.00116 0.95919 1.20388 0.80360 0.79038 0.90907 1.90787 1.52492 1.50687 1.45990 1.45965 1.32630 1.49624 1.09361 1.20589 0.95874 0.99734 0.82149 1.22628 0.94696 0.99583 1.04354 1.23320 0.96942 0.98289 0.95192 1.19979 0.98502 0.92940 0.84627 1.42616 1.81781 1.08808 1.06467 1.19069 1.38018 0.92175 0.88359 0.89108 1.24684 1.01423 0.97272 0.95745 1.69703 1.53471 1.32918 1.01943 0.86519 0.78451 0.86136 0.77281 1.21040 1.21650 1.20290 1.83908 1.16197 1.35166 1.71592 0.90247 0.90561 0.89329 0.83515 0.83497 0.85824 0.87159 0.76641 0.89116 0.90979 0.86926 0.86878 0.94524 0.93909 0.80546 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.15 7.32 -35.63 -0.26 -0.41 16 3 C -0.21 -2.31 10.81 -39.70 -0.43 -2.74 16 4 C -0.19 -2.21 10.81 -39.70 -0.43 -2.64 16 5 C 0.00 0.02 5.81 -35.62 -0.21 -0.18 16 6 C -0.06 -0.50 6.23 -29.03 -0.18 -0.68 16 7 C 0.51 6.31 7.82 -10.98 -0.09 6.23 16 8 O -0.52 -9.36 16.03 5.56 0.09 -9.27 16 9 N -0.72 -7.58 5.55 -61.47 -0.34 -7.92 16 10 C 0.14 1.87 5.76 -5.19 -0.03 1.84 16 11 C -0.19 -2.38 9.63 -36.02 -0.35 -2.73 16 12 C -0.12 -1.74 9.63 -36.02 -0.35 -2.09 16 13 C 0.17 3.22 6.35 -5.19 -0.03 3.19 16 14 N -0.75 -18.23 5.40 -61.09 -0.33 -18.56 16 15 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 16 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 18 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 19 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 23 O -0.17 -2.20 10.65 5.69 0.06 -2.14 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 2.70 8.46 -40.82 -0.35 2.36 16 32 H 0.09 1.46 5.30 -51.93 -0.28 1.18 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.86 5.30 -51.93 -0.27 0.59 16 38 H 0.36 8.49 5.52 -40.82 -0.23 8.27 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -37.19 336.80 -6.98 -44.17 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.36 Total: 7.63 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.23 Total: -7.60 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.10 Total: -55.48 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.15 Total: -11.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.19 -6.98 -44.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668786437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.213 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds