Wall clock time and date at job start Tue Mar 31 2020 00:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34514 * 125.79353 * 2 1 4 4 C 1.41380 * 106.84091 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84207 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78781 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46796 * 89.99668 * 6 5 4 8 8 O 1.21272 * 120.00302 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99431 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99844 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47208 * 180.02562 * 10 9 7 12 12 C 1.30993 * 120.00239 * 127.15517 * 11 10 9 13 13 C 1.50700 * 120.00033 * 7.55330 * 12 11 10 14 14 N 1.46501 * 109.46758 * 127.00514 * 13 12 11 15 15 C 1.36937 * 119.99830 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00505 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99996 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00189 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00122 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46892 * 90.00475 * 19 17 15 21 21 H 1.48496 * 109.47081 * 210.00321 * 19 17 15 22 22 H 1.48496 * 109.47136 * 330.00589 * 19 17 15 23 23 O 1.34304 * 108.41973 * 0.25608 * 5 4 3 24 24 H 1.09005 * 109.46742 * 89.99990 * 1 2 3 25 25 H 1.08998 * 109.47708 * 210.00297 * 1 2 3 26 26 H 1.09006 * 109.47077 * 330.00479 * 1 2 3 27 27 H 1.07997 * 126.57947 * 0.05396 * 3 2 1 28 28 H 1.08000 * 126.58080 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47394 * 329.99368 * 6 5 4 30 30 H 1.09002 * 109.46687 * 209.98867 * 6 5 4 31 31 H 0.97003 * 120.00260 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.46552 * 299.99752 * 10 9 7 33 33 H 1.08994 * 109.47238 * 59.99544 * 10 9 7 34 34 H 1.08003 * 119.99323 * 307.15535 * 11 10 9 35 35 H 1.08005 * 119.99942 * 187.56174 * 12 11 10 36 36 H 1.08995 * 109.47607 * 247.00858 * 13 12 11 37 37 H 1.09001 * 109.47213 * 7.01353 * 13 12 11 38 38 H 0.96995 * 120.00512 * 0.02562 * 14 13 12 39 39 H 0.96993 * 120.00474 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5813 -0.7124 -0.0015 6 6 4.7705 -1.6381 -0.0019 7 6 5.1666 -1.9475 1.4189 8 8 4.5448 -1.4636 2.3409 9 7 6.2118 -2.7620 1.6649 10 6 6.5966 -3.0633 3.0460 11 6 7.7858 -3.9889 3.0457 12 6 8.8577 -3.6784 3.7316 13 6 8.8430 -2.4870 4.6543 14 7 9.2860 -2.8976 5.9890 15 6 9.3534 -1.9777 7.0011 16 1 9.0804 -0.9494 6.8154 17 6 9.7737 -2.3666 8.2656 18 7 9.8380 -1.4826 9.2387 19 14 10.2466 -4.1450 8.5868 20 1 11.6961 -4.3275 8.3207 21 1 9.9564 -4.4864 10.0026 22 1 9.4633 -5.0348 7.6925 23 8 2.2923 -1.0895 -0.0072 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9667 2.1203 0.0008 28 1 4.5213 1.2431 -0.0004 29 1 5.6039 -1.1587 -0.5152 30 1 4.5105 -2.5633 -0.5162 31 1 6.7089 -3.1494 0.9274 32 1 6.8567 -2.1383 3.5606 33 1 5.7629 -3.5425 3.5591 34 1 7.7543 -4.9083 2.4798 35 1 9.7522 -4.2761 3.6358 36 1 9.5146 -1.7202 4.2685 37 1 7.8309 -2.0867 4.7147 38 1 9.5316 -3.8210 6.1558 39 1 10.1313 -1.7543 10.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668786437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:25 Heat of formation + Delta-G solvation = -14.518843 kcal Electronic energy + Delta-G solvation = -20168.359631 eV Core-core repulsion = 16884.685794 eV Total energy + Delta-G solvation = -3283.673837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.55189 -40.72493 -38.09401 -36.19969 -34.51227 -34.15210 -33.89653 -32.81035 -30.94990 -28.32712 -26.77374 -25.45749 -24.05538 -22.79992 -21.86050 -21.08029 -20.51208 -19.30327 -18.06542 -17.83455 -17.34448 -16.91232 -16.56802 -16.48313 -15.89633 -15.53069 -15.22928 -14.95309 -14.60915 -14.32657 -14.30031 -14.09799 -13.76943 -13.73276 -13.62796 -13.49982 -13.06857 -12.95507 -12.74750 -12.51677 -12.21673 -11.89137 -11.66075 -11.19732 -11.06579 -10.81701 -10.37186 -9.98287 -9.28903 -9.21927 -8.06218 -5.41469 0.66876 1.04090 1.36510 1.41665 1.49277 1.57655 1.63013 1.94392 2.45893 2.46729 3.24668 3.55029 3.74072 3.84114 3.93563 4.00497 4.11367 4.11950 4.26596 4.32148 4.44133 4.57648 4.58606 4.70014 4.82517 4.85448 4.88615 4.91644 5.05084 5.06385 5.28440 5.35800 5.55025 5.62919 5.68840 5.85805 6.17449 6.19876 6.54593 7.03761 7.24399 7.77814 7.99494 9.15347 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.002680 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.871572 B =10445.411449 C =10969.847632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.230 4.230 4 C -0.210 4.210 5 C -0.019 4.019 6 C -0.049 4.049 7 C 0.505 3.495 8 O -0.588 6.588 9 N -0.704 5.704 10 C 0.136 3.864 11 C -0.152 4.152 12 C -0.139 4.139 13 C 0.161 3.839 14 N -0.753 5.753 15 C -0.244 4.244 16 H 0.051 0.949 17 C -0.067 4.067 18 N -0.984 5.984 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.295 1.295 22 H -0.249 1.249 23 O -0.192 6.192 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.423 0.577 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.369 0.631 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 -4.351 -28.153 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 C -0.249 4.249 4 C -0.229 4.229 5 C -0.069 4.069 6 C -0.088 4.088 7 C 0.292 3.708 8 O -0.468 6.468 9 N -0.357 5.357 10 C 0.012 3.988 11 C -0.171 4.171 12 C -0.158 4.158 13 C 0.036 3.964 14 N -0.400 5.400 15 C -0.374 4.374 16 H 0.069 0.931 17 C -0.258 4.258 18 N -0.634 5.634 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.173 1.173 23 O -0.090 6.090 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.161 0.839 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.203 0.797 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.901 -4.093 -27.420 31.014 hybrid contribution 0.697 -0.331 0.827 1.131 sum -13.204 -4.424 -26.593 30.019 Atomic orbital electron populations 1.20473 0.82625 1.04901 1.04817 1.23185 0.95596 0.83801 1.05089 1.21898 0.92736 1.00451 1.09803 1.21871 0.99146 0.94264 1.07658 1.21998 0.83129 0.94684 1.07042 1.20230 0.93684 1.01511 0.93337 1.21132 0.79676 0.77974 0.91985 1.90766 1.54656 1.53133 1.48237 1.45728 1.32204 1.48952 1.08848 1.20401 0.96190 0.98602 0.83580 1.22833 0.92254 0.99655 1.02339 1.23067 0.99124 0.97450 0.96156 1.20065 0.97285 0.95414 0.83633 1.42598 1.81869 1.08266 1.07219 1.19033 1.36900 0.91574 0.89936 0.93128 1.25638 1.02007 1.02815 0.95354 1.69905 1.55257 1.35760 1.02522 0.85280 0.78782 0.79837 0.77101 1.19805 1.22150 1.17338 1.83901 1.16916 1.36158 1.71980 0.88202 0.90493 0.87860 0.81799 0.82476 0.82160 0.83883 0.73907 0.92385 0.92222 0.82484 0.84581 0.95305 0.95075 0.79716 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.42 71.23 0.74 -0.17 16 2 C -0.03 -0.58 7.32 24.83 0.18 -0.40 16 3 C -0.23 -5.02 10.81 22.19 0.24 -4.78 16 4 C -0.21 -4.84 10.81 22.19 0.24 -4.60 16 5 C -0.02 -0.43 5.81 24.83 0.14 -0.28 16 6 C -0.05 -0.71 6.23 29.10 0.18 -0.53 16 7 C 0.50 11.98 7.82 87.66 0.69 12.66 16 8 O -0.59 -21.53 16.03 -3.01 -0.05 -21.58 16 9 N -0.70 -13.11 5.55 -466.78 -2.59 -15.70 16 10 C 0.14 3.49 5.76 85.63 0.49 3.98 16 11 C -0.15 -3.18 9.63 25.65 0.25 -2.93 16 12 C -0.14 -3.72 9.63 25.65 0.25 -3.47 16 13 C 0.16 6.27 6.35 85.63 0.54 6.82 16 14 N -0.75 -36.36 5.40 -347.18 -1.87 -38.23 16 15 C -0.24 -14.54 10.47 84.03 0.88 -13.66 16 16 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.98 -64.85 13.97 21.65 0.30 -64.55 16 19 Si 0.96 45.97 27.74 68.60 1.90 47.88 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 23 O -0.19 -4.87 10.65 -2.56 -0.03 -4.90 16 24 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.42 3.98 8.46 -92.71 -0.78 3.19 16 32 H 0.06 1.91 5.30 -2.39 -0.01 1.90 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.03 1.30 5.30 -2.39 -0.01 1.29 16 38 H 0.37 16.56 5.52 -92.71 -0.51 16.04 16 39 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -86.10 336.80 2.67 -83.42 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.28 Total: 24.60 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.29 Total: -10.94 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.16 Total: -118.48 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.08 Total: -26.47 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.88 kcal Total: -86.10 2.67 -83.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668786437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.902 kcal (2) G-P(sol) polarization free energy of solvation -86.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds